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<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'>Thanks Jothy, now I can shift the ROI, but I’m still trying to
figure out the mathematical relationship between the 2 coordinate systems. <o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'><o:p> </o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'>I thought that it was just the differences in origin (Top/Left
vs. bottom/left) but that doesn’t seem to be correct. By just eyeballing it, Z
coordinates seem to differ as well. Maybe reversed?<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'><o:p> </o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'> -- Scott<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'><o:p> </o:p></span></p>
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<p class=MsoNormal><b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'>From:</span></b><span
style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'> Jothy
[mailto:jothybasu@gmail.com] <br>
<b>Sent:</b> Monday, May 24, 2010 4:20 PM<br>
<b>To:</b> Scott Johnson<br>
<b>Cc:</b> VTK<br>
<b>Subject:</b> Re: [vtkusers] Segment Import from itksnap<o:p></o:p></span></p>
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<p class=MsoNormal><o:p> </o:p></p>
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<p class=MsoNormal style='margin-bottom:12.0pt'>Will vtkTransformPolyDataFilter
help? Of course, you should know the vector to shift.<br>
<br>
Jothy<o:p></o:p></p>
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<p class=MsoNormal>On Mon, May 24, 2010 at 10:00 PM, Scott Johnson <<a
href="mailto:Scott.Johnson@neuwave.com">Scott.Johnson@neuwave.com</a>>
wrote:<o:p></o:p></p>
<div>
<div>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
style='font-size:11.0pt;color:#1F497D'>It seems that my image origin is fine,
but the exported segmentation origin is not. If the image origin was
incorrect I would have expected a different result in Paraview.</span><o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
style='font-size:11.0pt;color:#1F497D'> </span><o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
style='font-size:11.0pt;color:#1F497D'>I’m just looking for something to shift
the PolyData. The issue is by how much? Right now I’m looking at
shifting the vtkActor for the PolyData.</span><o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
style='font-size:11.0pt;color:#1F497D'> </span><o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
style='font-size:11.0pt;color:#1F497D'>Thanks</span><o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
style='font-size:11.0pt;color:#1F497D'> </span><o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
style='font-size:11.0pt;color:#1F497D'>
-- Scott</span><o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
style='font-size:11.0pt;color:#1F497D'> </span><o:p></o:p></p>
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border-color:-moz-use-text-color -moz-use-text-color'>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><b><span
style='font-size:10.0pt'>From:</span></b><span style='font-size:10.0pt'> Jothy
[mailto:<a href="mailto:jothybasu@gmail.com" target="_blank">jothybasu@gmail.com</a>]
<br>
<b>Sent:</b> Monday, May 24, 2010 3:56 PM<br>
<b>To:</b> Scott Johnson<br>
<b>Cc:</b> VTK<br>
<b>Subject:</b> Re: [vtkusers] Segment Import from itksnap</span><o:p></o:p></p>
</div>
<div>
<div>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'> <o:p></o:p></p>
<div>
<p class=MsoNormal style='mso-margin-top-alt:auto;margin-bottom:12.0pt'>I think
you should set the appropriate ImageOrigin.<br>
<br>
Jothy<o:p></o:p></p>
<div>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'>On
Mon, May 24, 2010 at 9:52 PM, Scott Johnson <<a
href="mailto:Scott.Johnson@neuwave.com" target="_blank">Scott.Johnson@neuwave.com</a>>
wrote:<o:p></o:p></p>
<div>
<div>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'>Hi
Folks,<o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'> <o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'>I
segmented a volume in itksnap, exported it to a VTK Mesh, and attempted to
import it into my VTK application using vtkPolyDataReader. The shape
seems to import correctly, but it is located outside my image volume. (To
the left and down.)<o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'> <o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'>I’ve
tried converting the vtp file to an XML file and imported using vtkXMLPolyDataReader,
with the same result. It’s also the same if I import to Paraview.<o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'> <o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'>Is
this the difference between the ITK and VTK coordinate systems? If so, is
this only a translation issue? What is the mathematical relationship
between the ITK and VTK coordinate systems?<o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'> <o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'>Thanks<o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'> <o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'>
-- Scott<o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'> <o:p></o:p></p>
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<p class=MsoNormal style='mso-margin-top-alt:auto;margin-bottom:12.0pt'><br>
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