MantisBT - VTK
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IDProjectCategoryView StatusDate SubmittedLast Update
0012572VTK(No Category)public2011-09-05 10:492016-08-12 09:55
ReporterMathieu Malaterre 
Assigned ToDavid Partyka 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusclosedResolutionmoved 
PlatformOSOS Version
Product Version 
Target VersionFixed in Version 
ProjectTitan
Typeincorrect functionality
Summary0012572: Incorrect assumptions for MPI_INCLUDE_PATH in VTK
Description I am currently trying to compile VTK 5.8.0 on my linux/debian box.
On debian OpenMPI is the default MPI implementation. In this case
FindMPI.cmake module from cmake 2.8.5 is finding that I have:

MPI_INCLUDE_PATH:STRING=/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi

 which is compatible with the documentation of FindMPI.cmake, where
MPI_INCLUDE_PATH is documented to have one *or more* paths. However in
VTK, it is assumed (or it looks like) that MPI_INCLUDE_PATH is
supposed to be a single path pointing to mpi.h:

$ grep -r MPI_INCLUDE_PATH * | grep \"
Utilities/IceT/IceTConfig.cmake.in:SET(ICET_MPI_INCLUDE_PATH
"@MPI_INCLUDE_PATH@")
Utilities/Xdmf2/XDMFConfig.cmake.in: SET(XDMF_MPI_INCLUDE_PATH
"@MPI_INCLUDE_PATH@")
VTK/Infovis/Testing/Cxx/CMakeLists.txt:
INCLUDE_DIRECTORIES("${MPI_INCLUDE_PATH}")
VTK/Examples/ParallelProcessing/Generic/Cxx/CMakeLists.txt:
INCLUDE_DIRECTORIES("${MPI_INCLUDE_PATH}")
VTK/Parallel/CMakeLists.txt: INCLUDE_DIRECTORIES("${MPI_INCLUDE_PATH}")
VTK/Parallel/Testing/Cxx/CMakeLists.txt:
INCLUDE_DIRECTORIES("${MPI_INCLUDE_PATH}")
VTK/Utilities/mrmpi/CMakeLists.txt: INCLUDE_DIRECTORIES("${MPI_INCLUDE_PATH}")
VTK/Utilities/VPIC/CMakeLists.txt: INCLUDE_DIRECTORIES("${MPI_INCLUDE_PATH}")
VTK/Utilities/Cosmo/CMakeLists.txt: INCLUDE_DIRECTORIES("${MPI_INCLUDE_PATH}")
VTK/Utilities/vtkhdf5/CMakeLists.txt: SET (CMAKE_REQUIRED_INCLUDES
"${MPI_INCLUDE_PATH}/mpi.h" )
VTK/Utilities/vtkhdf5/CMakeLists.txt: CHECK_SYMBOL_EXISTS
(MPI_Comm_c2f "${MPI_INCLUDE_PATH}/mpi.h"
H5_HAVE_MPI_MULTI_LANG_Comm)
VTK/Utilities/vtkhdf5/CMakeLists.txt: CHECK_SYMBOL_EXISTS
(MPI_Info_c2f "${MPI_INCLUDE_PATH}/mpi.h"
H5_HAVE_MPI_MULTI_LANG_Info)
VTK/Wrapping/Tcl/CMakeLists.txt: INCLUDE_DIRECTORIES("${MPI_INCLUDE_PATH}")
VTK/Wrapping/Python/CMakeLists.txt: INCLUDE_DIRECTORIES("${MPI_INCLUDE_PATH}")
VTK/VTKConfig.cmake.in:SET(VTK_MPI_INCLUDE_DIR "@MPI_INCLUDE_PATH@")


This leads to compilation line such as:

cd /.../paraview/debian/build/VTK/Utilities/mrmpi/src && /usr/bin/c++
...
-I"/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi"
 -o CMakeFiles/MapReduceMPI.dir/keyvalue.cpp.o -c
/home/mathieu/debian/paraview/VTK/Utilities/mrmpi/src/keyvalue.cpp

Which of course do not work.
Steps To Reproduce
Additional Information
TagsNo tags attached.
Relationships
Attached Filesdiff repair_mpi_includes.diff (8,415) 2012-02-06 11:41
https://www.vtk.org/Bug/file/9112/repair_mpi_includes.diff
Issue History
Date ModifiedUsernameFieldChange
2011-09-05 10:49Mathieu MalaterreNew Issue
2011-09-05 12:45Mathieu MalaterreNote Added: 0027456
2011-09-06 09:03Utkarsh AyachitAssigned To => David Partyka
2011-09-06 09:03Utkarsh AyachitStatusbacklog => tabled
2012-02-06 11:41jzarlNote Added: 0028059
2012-02-06 11:41jzarlFile Added: repair_mpi_includes.diff
2012-02-13 10:44Jeff BaumesProjectTBD => Titan
2013-07-22 20:03Dave DeMarleStatustabled => backlog
2013-07-22 20:03Dave DeMarleNote Added: 0031257
2013-07-22 20:33Dave DeMarleStatusbacklog => expired
2013-07-22 20:33Dave DeMarleNote Added: 0031281
2016-08-12 09:55Kitware RobotNote Added: 0037242
2016-08-12 09:55Kitware RobotStatusexpired => closed
2016-08-12 09:55Kitware RobotResolutionopen => moved

Notes
(0027456)
Mathieu Malaterre   
2011-09-05 12:45   
Here is the log in a sid/debian/chroot:


-- Found HDF5: debug;/usr/lib/libhdf5.so;debug;/usr/lib/x86_64-linux-gnu/libpthread.so;debug;/usr/lib/libz.so;debug;/usr/lib/x86_64-linux-gnu/libm.so;optimized;/usr/lib/libhdf5.so;optimized;/usr/lib/x86_64-linux-gnu/libpthread.so;optimized;/usr/lib/libz.so;optimized;/usr/lib/x86_64-linux-gnu/libm.so
-- Found JPEG: /usr/lib/libjpeg.so
-- Found PNG: /usr/lib/x86_64-linux-gnu/libpng.so
-- Found TIFF: /usr/lib/libtiff.so
-- Found EXPAT: /usr/lib/libexpat.so
-- Found LibXml2: /usr/lib/libxml2.so
-- Found OGGTHEORA: /usr/lib/libogg.so
-- Found OpenGL: /usr/lib/x86_64-linux-gnu/libGL.so
CMake Warning (dev) at /usr/share/cmake-2.8/Modules/FindMPI.cmake:81 (include):
  File /usr/share/cmake-2.8/Modules/FindMPI.cmake includes
  /tmp/buildd/paraview-3.10.1/CMake/GetPrerequisites.cmake (found via
  CMAKE_MODULE_PATH) which shadows
  /usr/share/cmake-2.8/Modules/GetPrerequisites.cmake. This may cause errors
  later on .

  Policy CMP0017 is not set: Prefer files from the CMake module directory
  when including from there. Run "cmake --help-policy CMP0017" for policy
  details. Use the cmake_policy command to set the policy and suppress this
  warning.
Call Stack (most recent call first):
  VTK/CMakeLists.txt:876 (FIND_PACKAGE)
This warning is for project developers. Use -Wno-dev to suppress it.
(0028059)
jzarl   
2012-02-06 11:41   
I can confirm this on SLES11.1 using openmpi. The attached patch "repair_mpi_includes.diff" fixes the issue for me...
(0031257)
Dave DeMarle   
2013-07-22 20:03   
moving all "tabled" bugs into "backlog" category since "tabled" is no longer used.
(0031281)
Dave DeMarle   
2013-07-22 20:33   
Dave P no longer works on the project. If these old issues still exist in 6.0.0, reopen them and assign to Dave DeMarle
(0037242)
Kitware Robot   
2016-08-12 09:55   
Resolving issue as `moved`.

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