SimpleITK/Tcon 2011 6 8

Tcon Information

Phone Line:

  Please join the following teleconference line:
      Toll-Free #:      1-800-704-9804 
      International #:  1-404-920-6604
      Participant Code: 61466276

  Wednesday, May 25th, 9:30am Eastern Time

  https://cc.readytalk.com/r/77mucyg9wmzs

Attendees

• Dan Blezek
• Brad Lowekamp
• Gabe Hart
• Luis Ibanez

IMPORTANT

• Repository has moved DO NOT USE GITHUB any more
• New Repository
  • http://itk.org/gitweb?p=SimpleITK.git
• Getting Started

mv SimpleITK SimpleITK-old

git clone --recursive http://itk.org/SimpleITK.git:

cd SimpleITK

git remote add stage git://public.kitware.com/stage/SimpleITK.git

git config remote.stage.pushurl git@public.kitware.com:stage/SimpleITK.git

git fetch --all --prune

ssh git@public.kitware.com stage SimpleITK print

• Additional Information
  • http://public.kitware.com/Wiki/Git/Workflow/Stage
  • http://public.kitware.com/Wiki/Git/Workflow/Topic
• It should be easier to use the topic based workflow
  • There are check to prevent common errors
  • There is a list of topic merged into next, and staged
  • The named topic in the stage can be modified, and remerged
    • No longer a need to find the right commit to continue a topic branch
• Workflow overview
  • Create topic branch from master
  • edit file and commit in topic branch
  • push to stage
  • issue ssh command to merge topic into next
• Example

git checkout master

git pull

git checkout -b topic

edit files

git commit ...

git fetch stage --prune

git push stage HEAD

ssh git@public.kitware.com stage SimpleITK print

ssh git@public.kitware.com stage repo merge -b next topic-name

Links

• CDASH: http://www.cdash.org/CDash/index.php?project=Insight#ITKv4_SimpleITK
• COVERAGE: *still missing*
• GIT: http://itk.org/gitweb?p=SimpleITK.git;a=log
• DOXYGEN: http://erie.nlm.nih.gov/~blowek1/SimpleITK/index.html
• JIRA: https://itk.icts.uiowa.edu/jira/browse/SIMPLEITK

User Feedback

Other Users

• ImageJDev/FIJI hackathon: Jan 29th - Feb 11th
  • Integrate ITK with ImageJ
  • Integrate ITK with CellProfiler
• ImageJDev image is 5D (x,y,z,t,channel)
  • Internal class ImagePlus use Java arrays

Daily Details

Currently Staged Topics

90-ImageCopyConstructorWarning | master=0 next=1
SIMPLEITK-77_imshow_function | master=0 next=0
SIMPLEITK-1_registration | master=0 next=0
SIMPLEITK-51-AutogenerateDocumentation | master=0 next=0
SIMPLEITK-75-AddDoxygenPageForContributing | master=0 next=1
SIMPLEITK-78_LabelStatisticsImageFilter | master=0 next=0
11-AddingFFTs | master=0 next=0

• DO NOT MERGE THESE

SIMPLEITK-89_Fixing_warnings | master=0 next=0 
DONT_MERGE_FIX_SIMPLEITK-80_no_individual_headers | master=0 next=0
contains-next-SIMPLEITK-89_Fixing_warnings | master=0 next=0

Other Open Topics

• Documentation
  • Developer Practices
  • Getting Started

• CMake
  • Shared Libraries
  • Installation
  • R, C#
  • Update to best CMake practices
  • Hans has new CMake issues!

• We are not consistent with our described conventions!
  • http://erie.nlm.nih.gov/~blowek1/SimpleITK/Conventions.html
  • https://itk.icts.uiowa.edu/jira/browse/SIMPLEITK-84
  • NEED to add issue for mask consistency

• 40-ConnectingSimpleITKImageTOJava
  • What happened to the ImportImageFilter?

• 11-AddingFFTs
  • Should Geatan's IJ paper be move into ITK?
  • should be completed before lunch today!

• 49-GeometryTransforms
  • How do we specify Regions?

• Test drivers need work
  • Can we reuse ITK's?
  • They currently don't work with Valgrind due to sub processes

• 4-AddingGetPixelMethods
  • CLOSED - merged to master

• AddingOperators
  • Completed

Review JIRA Issues

Any Blocking issues which need to be addressed?

Schedule

Discuss long term goals and milestones.

• Documentations
  • Luis to begin Slide Documentation
    • Getting started guide
    • Users Guide
  • How to populate Doxygen

• Automate Script to List filters wrapped
  • This script should take as input a list of ITK Modules or Directories, for each modual determine which filters are implemented in SimpleITK
  • Additional input would include filter/files to exclude
  • Output could be a dox file, so that it could be a doxygen related page

• Registration is very important