FRAT/Install Guide

__NOTITLE__

(F)luid (R)egistration and (A)tlas (T)oolkit

Home Image Gallery Data and Publications For Users Installation Guide Documentation FRAT with Slicer For Developers libFRAT Development Docs Contact Us

Installation Guide WARNING: FRAT is currently a work in progress and is under no mandate to maintain backward compatibility. Dependencies FRAT is configured and built using CMake. A basic understanding of CMake is assumed. Documentation and tutorials can be found at [1]. In this walkthrough, we demonstrate configuration at the linux command line. The CMake GUI can also be used in Windows or Linux. FRAT requires a full setup of the Insight Toolkit (ITK), GenerateCLP, and a working FFTW setup. The easiest way to get ITK and GenerateCLP is to do a complete install of TubeTK. For build instructions, go here. For FFTW installation instructions, go here. Download FRAT Source Code NOTE: Currently FRAT is available only as source. Binary executables may be available in the future. Create the directory for your FRAT setup. We'll refer to it as FRAT_DIR for the sake of clarity. In FRAT_DIR, clone the repository cd FRAT_DIR git clone git://gitorious.org/frat/frat.git After cloning you should now have a FRAT_DIR/frat/ directory Configure build First, create a build directory and enter it. Typically this will live alongside the source directory. mkdir build cd build Now, use cmake to configure the build ccmake FRAT_DIR/frat You will now be presented with the cmake configuration interface. Press 'c' to run the initial configuration. You will initially be presented with errors since the paths to ITK and GenerateCLP probably won't be immediately found. If you built ITK and GenerateCLP by building TubeTK (assuming TubeTK built with SuperBuild in TubeTK_BUILD_DIR), set the paths as: ITK_DIR TubeTK_BUILD_DIR/GenerateCLP-Build GenerateCLP_DIR TubeTK_BUILD_DIR/Insight-Build By default, only the test applications are enabled. To build the entire toolkit, set COMPILE_APPLICATIONS ON COMPILE_TESTING ON For further control, individual executables (tests and applications) can be enabled or disabled in the advanced options. Press (t) to toggle the advanced view on. Once the option to generate is presented, press (g) to generate the build files Build This is the easy part. Just run make (optionally with a -j flag for parallel compilation) make -j4 To build the Doxygen documentation, enable BUILD_DOCUMENTATION in CMake and build the "doc" target make doc