Revision as of 14:34, 19 March 2014

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Instructions

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Tools used in different aspects of the simulation

1. TubeTK - Vessel extraction

2. Slicer - Visualization and interface to TubeTK

3. VMTK - Another vessel extractor

4. BET - Brain extraction tool, part of FSL. Also, look https://github.com/ricortiz/BET for an easy to build executable.

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 == Segmentation==
-. [TubeTK](http://www.tubetk.org/) - Vessel extraction
+. [http://www.tubetk.org/ TubeTK] - Vessel extraction
-. [Slicer](http://www.slicer.org/) - Visualization and interface to TubeTK
+. [http://www.slicer.org/ Slicer] - Visualization and interface to TubeTK
-. [VMTK](http://www.vmtk.org/) - Another vessel extractor
+. [http://www.vmtk.org/ VMTK] - Another vessel extractor
-. [BET](http://fsl.fmrib.ox.ac.uk/fsl/fsl-4.1.9/bet2/index.html) - Brain extraction tool, part of FSL. Also, look https://github.com/ricortiz/BET for an easy to build executable.
+. [http://fsl.fmrib.ox.ac.uk/fsl/fsl-4.1.9/bet2/index.html BET] - Brain extraction tool, part of FSL. Also, look https://github.com/ricortiz/BET for an easy to build executable.
 |}