KWScene/Documentation/JHU Open Questions: Difference between revisions
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= Open Questions = | |||
= Planned use-cases under Paraview = | = Planned use-cases under Paraview = | ||
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* Annotations: scenario evoked by Joe Hennessey involving .vti format. (What are JHU tasks, what are Kitware tasks?) | * Annotations: scenario evoked by Joe Hennessey involving .vti format. (What are JHU tasks, what are Kitware tasks?) | ||
https://mail.google.com/a/kitware.com/#search/vti+file/127d01aa4fe98047 | https://mail.google.com/a/kitware.com/#search/vti+file/127d01aa4fe98047 | ||
* Relevance Transform nodes? (JHU data seems to be in one common image-based reference space...) | |||
= Remaining formats to develop and test = | = Remaining formats to develop and test = | ||
| Line 35: | Line 35: | ||
*Just begun. Need to flesh out entry for existing classes. | *Just begun. Need to flesh out entry for existing classes. | ||
=== Successful tests | = GIT = | ||
* Transition from SVN to GIT? | |||
= Other general open questions = | |||
* Transform Nodes. | |||
= Successful tests = | |||
* Scalar-valued data | * Scalar-valued data | ||
Latest revision as of 13:52, 26 April 2010
Open Questions
Planned use-cases under Paraview
- VTK-based visualization feasible, but... Use-case for ITK-based image analysis? (Also Paraview-based?)
- Structure & use-case of writing classes?
- Annotations: scenario evoked by Joe Hennessey involving .vti format. (What are JHU tasks, what are Kitware tasks?)
https://mail.google.com/a/kitware.com/#search/vti+file/127d01aa4fe98047
- Relevance Transform nodes? (JHU data seems to be in one common image-based reference space...)
Remaining formats to develop and test
- Scalar-valued data
- BYU surface: ITK Generators
- On-going.
- BYU surface: ITK Generators
- Vector-valued data
- VTP surface: VTK & ITK Generators
- VTI image: VTK & ITK Generators
- Landmarks
- Comes in both .lmk and .vti file formats.
- Annotations
- No data. Described by J. Hennessey as feasible in .vti file format.
Integrating new readers: vtkAnalyzeReader, vtkTransformFileReader, itkBYUReader.txx
- Some new readers needed for KWScene, e.g. vtkAnalyzeImageReader, vtkTransformFileReader, itkBYUReader.txx, may also be needed for Paraview.
- How to best integrate for both KWScene and Paraview?
Valgrind
- Just begun. Some issues with XML2 library.
Doxygen
- Just begun. Need to flesh out entry for existing classes.
GIT
- Transition from SVN to GIT?
Other general open questions
- Transform Nodes.
Successful tests
- Scalar-valued data
- VTK Generators
- BYU surface: VTK Generators.
- kwsVTKBYUSurfaceGeneratorTest1
- render all surfaces from JHU atlas, itself downloaded from MIDAS.
- Analyze image: VTK Generators.
- kwsVTKAnalyzeImageGeneratorTest1
- volume-render JHU right ventricle data
- kwsVTKAnalyzeImageGeneratorTest2
- coverage: open synthetic Analyze files of various pixel-type successfully, and report image size.
- kwsVTKAnalyzeImageGeneratorTest3
- coverage: same as wsVTKAnalyzeImageGeneratorTest2, but use mrml file with .hdr instead of .img references
- ITK Generators
- Analyze image: ITK Generators.
- kwsITKFactoryBasedImageNodeGeneratorAnalyzeTest
- open Analyze file of JHU right ventricle data, and report image size; fail if wrong size (not 256x256x256).
- BYU surface: ITK Generators.
- kwsITKBYUSurfaceNodeGeneratorTest1
- coverage: instantiate a BYU reader, add it to scene, use a node generator based on this scene that generates BYU surface node.
- VTK Generators
