ITK/Tcons/Agendas/2010 12 14: Difference between revisions
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* Dashboard Status - [http://www.cdash.org/CDash/index.php?project=Insight Today's Dashboard] | * Dashboard Status - [http://www.cdash.org/CDash/index.php?project=Insight Today's Dashboard] | ||
=== Lingering Failing Tests ( Feet + Heat ) === | |||
* JPEG2000 on BigEndian | |||
** Kitware/Harvard/Malaterre status update | |||
** Able to reproduce problem? | |||
** Anticipated resolution? | |||
* DICOM Tests tkGDCMSeriesStreamReadImageWrite3 and tkGDCMSeriesStreamReadImageWrite4 | |||
** Malaterre/Roden status update | |||
** Able to reproduce the problem? | |||
** resolution? | |||
* VXL vcl-test_atomic_count | |||
** Kitware status update? | |||
* KWStyle failing | |||
** FFT related failure | |||
== ITKv4-A04 == | == ITKv4-A04 == | ||
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* MICCAI 2011 Call for Workshops and Tutorials | * MICCAI 2011 Call for Workshops and Tutorials | ||
* [[ITK_Release_4/Outreach/Conferences/MICCAI 2011|Suggested Tutorials for MICCAI 2011]] | ** [[ITK_Release_4/Outreach/Conferences/MICCAI 2011|Suggested Tutorials for MICCAI 2011]] | ||
* Note that we already have an accepted tutorial for CVPR 2011 on the use of ITK+OpenCV | * Note that we already have an accepted tutorial for CVPR 2011 on the use of ITK+OpenCV | ||
| Line 53: | Line 71: | ||
** http://www.itk.org/Wiki/ITK_Documentation | ** http://www.itk.org/Wiki/ITK_Documentation | ||
== ITK Data== | |||
Three levels of data : | |||
#Testing - a select set of data sets that are used for regression testing - exists in MIDAS. | |||
#Examples - datasets that are part of the itk examples - exists but didn't see on MIDAS | |||
#Development - a large collection of various image data sets and segmentations used by the ITK developers and the community to tune algorithm parameters and select optimal combinations of components in pipelines. | |||
A data set will include: | |||
#image(s) | |||
#additional data file(s) - optional | |||
#segmentation(s) - optional | |||
#detailed description of the data | |||
===Questions=== | |||
#Should this be hosted via MIDAS? NCI has a large, open, repository of various images (DICOM) with a very nice front end [https://imaging.nci.nih.gov/ncia/login.jsf], perhaps possible to leverage this? | |||
#Will kitware be willing to host such a large repository (I suspect this will be many Terabytes of data)? | |||
#What should we use as the file format for image(s), segmentation(s)? [smallest possible set of file formats that support the desired functionality]. | |||
== Migration Guide Process == | == Migration Guide Process == | ||
Latest revision as of 16:12, 14 December 2010
How to Join the Tcon
Number to Call
- 1-800-728-9607 (in the US) or
- +1 9139049873 (international)
- access code 6815251
Webex
- Meeting link
- https://emeetings.webex.com/emeetings/j.php?ED=138191182&UID=482060457&PW=NNzJiNDk1ZGU3
Project Management
February Meeting in Boston
- Set for February 2-3, 2011 in Boston at Harvard Medical School.
Please register for the meeting ASAP. Here is the link for the registration:
Technical Topics
Dashboard
- Dashboard Status - Today's Dashboard
Lingering Failing Tests ( Feet + Heat )
- JPEG2000 on BigEndian
- Kitware/Harvard/Malaterre status update
- Able to reproduce problem?
- Anticipated resolution?
- DICOM Tests tkGDCMSeriesStreamReadImageWrite3 and tkGDCMSeriesStreamReadImageWrite4
- Malaterre/Roden status update
- Able to reproduce the problem?
- resolution?
- VXL vcl-test_atomic_count
- Kitware status update?
- KWStyle failing
- FFT related failure
ITKv4-A04
- Fixing Windows 64bits problem with "long"...
Outreach
- MICCAI 2011 Call for Workshops and Tutorials
- Note that we already have an accepted tutorial for CVPR 2011 on the use of ITK+OpenCV
Redmine demo
- Project management software
- SimpleITK Redmine instance on EC2
Gerrit Reviews
Doxygen Nightly
ITK Data
Three levels of data :
- Testing - a select set of data sets that are used for regression testing - exists in MIDAS.
- Examples - datasets that are part of the itk examples - exists but didn't see on MIDAS
- Development - a large collection of various image data sets and segmentations used by the ITK developers and the community to tune algorithm parameters and select optimal combinations of components in pipelines.
A data set will include:
- image(s)
- additional data file(s) - optional
- segmentation(s) - optional
- detailed description of the data
Questions
- Should this be hosted via MIDAS? NCI has a large, open, repository of various images (DICOM) with a very nice front end [1], perhaps possible to leverage this?
- Will kitware be willing to host such a large repository (I suspect this will be many Terabytes of data)?
- What should we use as the file format for image(s), segmentation(s)? [smallest possible set of file formats that support the desired functionality].
Migration Guide Process
- Users Migration Guide (Gabe Hart)
- Example XML
Simple ITK
- Code generations
- Using Lua and JSON
- Interfacing to
- ImageJ / Fiji
- CellProfiler
GPU
- Summary of tcon with NVIDIA from Monday Nov 22 at 1pm EST (Won Ki)
- GPU Acceleration - V4
DICOM
Dan and Mathieu to report
- Beginnings of a requirements document. Comments welcome.
- Proposed TConf
Image Registration Revision
- Start sending patches to Gerrit
- New CompositeTransform class is underway
- New DeformationFieldTransform class is underway
- Transform IO will be adjusted accordingly
Level Set
- Refactoring page
Time Stamp Proposal
Modularization
- Had a Tcon about modularization on Dec 3 [2].
The initial partition seems to be good to start with.
- Brad King worked on cmake packaging prototypes
- Xiaoxiao Liu (Kitware) is working on scripts to migrate monolithic ITK to modular ITK
TIFF Update
- Brad King addressed the int issues
- Currently at
git fetch git://kwsource.kitwarein.com/~bradking/itk/bradkings-itk.git +libtiff4beta6:libtiff4beta6
Sequestered Reference Applications
We have already made significant changes, and they are not being recorded yet. It is time to setup these reference applications.
Ongoing
- V3D Plugins
- Slicer
- VV
- Insight Applications now submitting
- Broken: need to use it as an example for the Migration Guide.
Development Versions following ITKv4
- OTB
- GoFigure2
- Nightly build use the current ITKv4.
- http://my.cdash.org/index.php?project=GoFigure2
Pending
- IGSTK, after SPIE'11 (IGSTK5.0)
- Insight Applications (ITKApps from v3.20)
- ITK tests from v3.20
Wrapping
- Status (Alex)
- Wrapping
ITK Readers for Microscopy formats
- There's a need for readers in the microscopy community in order to be able to use ITK
- Zeiss (LSM and ZVI)
- Leica (LIF)
- Olympus (OIB)
- Nikon ()
- BioFormats has readers and example files for these. It is Java with C++ bindings for ITK, BUT it's GPL.
