TubeTK/Documentation/InteractivePDFSegmenter: Difference between revisions
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(Created page with "== Documentation == TODO: insert algorithm description here == Tutorial == === Tutorial Data === * The 2D brain image used in this example is distributed as part of Slicer4, a...") |
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#* Input Volume 3 (optional): None | #* Input Volume 3 (optional): None | ||
#* Output Volume: Create new volume | #* Output Volume: Create new volume | ||
#** Creates a new volume called "Volume" | #** Creates a new volume called "Volume": this will hold the final segmentation | ||
# '''Create the label map roughly outlining the structures to be segmented and the background''' | # '''Create the label map roughly outlining the structures to be segmented and the background''' | ||
#* Label Map: Create new volume | |||
#** Creates a new volume called "Volume1": this will hold the input label map | |||
#* A small version of Slicer's Editor module is embedded into the Interactive PDF Segmenter | |||
#* Create a label map roughly outlining the structures of interest and the background by using the paint, erase and threshold functions | |||
#** Click on the "Paint" button to begin editing | |||
#** Use a different label color for each structure of interest: choose the label by clicking the colored push button | |||
#** Create a label for the background as well | |||
#* In the following example, green represents gray matter, yellow represents white matter, and brown represents the background | |||
Revision as of 02:34, 7 January 2011
Documentation
TODO: insert algorithm description here
Tutorial
Tutorial Data
- The 2D brain image used in this example is distributed as part of Slicer4, and is located in Slicer4/Testing/Data/Input/brainSliceDOUBLE.mha
Tutorial Steps
- Load brainSliceDOUBLE.mha:
- File -> Add Volume
- Open the Interactive PDF Segmenter module
- Set the input and output volumes
- Input Volume 1: brainSliceDOUBLE
- Input Volume 2 (optional): None
- Input Volume 3 (optional): None
- Output Volume: Create new volume
- Creates a new volume called "Volume": this will hold the final segmentation
- Create the label map roughly outlining the structures to be segmented and the background
- Label Map: Create new volume
- Creates a new volume called "Volume1": this will hold the input label map
- A small version of Slicer's Editor module is embedded into the Interactive PDF Segmenter
- Create a label map roughly outlining the structures of interest and the background by using the paint, erase and threshold functions
- Click on the "Paint" button to begin editing
- Use a different label color for each structure of interest: choose the label by clicking the colored push button
- Create a label for the background as well
- In the following example, green represents gray matter, yellow represents white matter, and brown represents the background
- Label Map: Create new volume
