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IDProjectCategoryView StatusDate SubmittedLast Update
0012572VTK(No Category)public2011-09-05 10:492016-08-12 09:55
ReporterMathieu Malaterre 
Assigned ToDavid Partyka 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusclosedResolutionmoved 
PlatformOSOS Version
Product Version 
Target VersionFixed in Version 
Summary0012572: Incorrect assumptions for MPI_INCLUDE_PATH in VTK
Description I am currently trying to compile VTK 5.8.0 on my linux/debian box.
On debian OpenMPI is the default MPI implementation. In this case
FindMPI.cmake module from cmake 2.8.5 is finding that I have:

MPI_INCLUDE_PATH:STRING=/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi

 which is compatible with the documentation of FindMPI.cmake, where
MPI_INCLUDE_PATH is documented to have one *or more* paths. However in
VTK, it is assumed (or it looks like) that MPI_INCLUDE_PATH is
supposed to be a single path pointing to mpi.h:

$ grep -r MPI_INCLUDE_PATH * | grep \"
Utilities/IceT/IceTConfig.cmake.in:SET(ICET_MPI_INCLUDE_PATH
"@MPI_INCLUDE_PATH@")
Utilities/Xdmf2/XDMFConfig.cmake.in: SET(XDMF_MPI_INCLUDE_PATH
"@MPI_INCLUDE_PATH@")
VTK/Infovis/Testing/Cxx/CMakeLists.txt:
INCLUDE_DIRECTORIES("${MPI_INCLUDE_PATH}")
VTK/Examples/ParallelProcessing/Generic/Cxx/CMakeLists.txt:
INCLUDE_DIRECTORIES("${MPI_INCLUDE_PATH}")
VTK/Parallel/CMakeLists.txt: INCLUDE_DIRECTORIES("${MPI_INCLUDE_PATH}")
VTK/Parallel/Testing/Cxx/CMakeLists.txt:
INCLUDE_DIRECTORIES("${MPI_INCLUDE_PATH}")
VTK/Utilities/mrmpi/CMakeLists.txt: INCLUDE_DIRECTORIES("${MPI_INCLUDE_PATH}")
VTK/Utilities/VPIC/CMakeLists.txt: INCLUDE_DIRECTORIES("${MPI_INCLUDE_PATH}")
VTK/Utilities/Cosmo/CMakeLists.txt: INCLUDE_DIRECTORIES("${MPI_INCLUDE_PATH}")
VTK/Utilities/vtkhdf5/CMakeLists.txt: SET (CMAKE_REQUIRED_INCLUDES
"${MPI_INCLUDE_PATH}/mpi.h" )
VTK/Utilities/vtkhdf5/CMakeLists.txt: CHECK_SYMBOL_EXISTS
(MPI_Comm_c2f "${MPI_INCLUDE_PATH}/mpi.h"
H5_HAVE_MPI_MULTI_LANG_Comm)
VTK/Utilities/vtkhdf5/CMakeLists.txt: CHECK_SYMBOL_EXISTS
(MPI_Info_c2f "${MPI_INCLUDE_PATH}/mpi.h"
H5_HAVE_MPI_MULTI_LANG_Info)
VTK/Wrapping/Tcl/CMakeLists.txt: INCLUDE_DIRECTORIES("${MPI_INCLUDE_PATH}")
VTK/Wrapping/Python/CMakeLists.txt: INCLUDE_DIRECTORIES("${MPI_INCLUDE_PATH}")
VTK/VTKConfig.cmake.in:SET(VTK_MPI_INCLUDE_DIR "@MPI_INCLUDE_PATH@")


This leads to compilation line such as:

cd /.../paraview/debian/build/VTK/Utilities/mrmpi/src && /usr/bin/c++
...
-I"/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi"
 -o CMakeFiles/MapReduceMPI.dir/keyvalue.cpp.o -c
/home/mathieu/debian/paraview/VTK/Utilities/mrmpi/src/keyvalue.cpp

Which of course do not work.
TagsNo tags attached.
ProjectTitan
Typeincorrect functionality
Attached Filesdiff file icon repair_mpi_includes.diff [^] (8,415 bytes) 2012-02-06 11:41 [Show Content]

 Relationships

  Notes
(0027456)
Mathieu Malaterre (developer)
2011-09-05 12:45

 Here is the log in a sid/debian/chroot:


-- Found HDF5: debug;/usr/lib/libhdf5.so;debug;/usr/lib/x86_64-linux-gnu/libpthread.so;debug;/usr/lib/libz.so;debug;/usr/lib/x86_64-linux-gnu/libm.so;optimized;/usr/lib/libhdf5.so;optimized;/usr/lib/x86_64-linux-gnu/libpthread.so;optimized;/usr/lib/libz.so;optimized;/usr/lib/x86_64-linux-gnu/libm.so
-- Found JPEG: /usr/lib/libjpeg.so
-- Found PNG: /usr/lib/x86_64-linux-gnu/libpng.so
-- Found TIFF: /usr/lib/libtiff.so
-- Found EXPAT: /usr/lib/libexpat.so
-- Found LibXml2: /usr/lib/libxml2.so
-- Found OGGTHEORA: /usr/lib/libogg.so
-- Found OpenGL: /usr/lib/x86_64-linux-gnu/libGL.so
CMake Warning (dev) at /usr/share/cmake-2.8/Modules/FindMPI.cmake:81 (include):
  File /usr/share/cmake-2.8/Modules/FindMPI.cmake includes
  /tmp/buildd/paraview-3.10.1/CMake/GetPrerequisites.cmake (found via
  CMAKE_MODULE_PATH) which shadows
  /usr/share/cmake-2.8/Modules/GetPrerequisites.cmake. This may cause errors
  later on .

  Policy CMP0017 is not set: Prefer files from the CMake module directory
  when including from there. Run "cmake --help-policy CMP0017" for policy
  details. Use the cmake_policy command to set the policy and suppress this
  warning.
Call Stack (most recent call first):
  VTK/CMakeLists.txt:876 (FIND_PACKAGE)
This warning is for project developers. Use -Wno-dev to suppress it.
(0028059)
jzarl (reporter)
2012-02-06 11:41

 I can confirm this on SLES11.1 using openmpi. The attached patch "repair_mpi_includes.diff" fixes the issue for me...
(0031257)
Dave DeMarle (administrator)
2013-07-22 20:03

 moving all "tabled" bugs into "backlog" category since "tabled" is no longer used.
(0031281)
Dave DeMarle (administrator)
2013-07-22 20:33

 Dave P no longer works on the project. If these old issues still exist in 6.0.0, reopen them and assign to Dave DeMarle
(0037242)
Kitware Robot (administrator)
2016-08-12 09:55

 Resolving issue as `moved`.

This issue tracker is no longer used. Further discussion of this issue may take place in the current VTK Issues page linked in the banner at the top of this page.

 Issue History
Date Modified Username Field Change
2011-09-05 10:49 Mathieu Malaterre New Issue
2011-09-05 12:45 Mathieu Malaterre Note Added: 0027456
2011-09-06 09:03 Utkarsh Ayachit Assigned To => David Partyka
2011-09-06 09:03 Utkarsh Ayachit Status backlog => tabled
2012-02-06 11:41 jzarl Note Added: 0028059
2012-02-06 11:41 jzarl File Added: repair_mpi_includes.diff
2012-02-13 10:44 Jeff Baumes Project TBD => Titan
2013-07-22 20:03 Dave DeMarle Status tabled => backlog
2013-07-22 20:03 Dave DeMarle Note Added: 0031257
2013-07-22 20:33 Dave DeMarle Status backlog => expired
2013-07-22 20:33 Dave DeMarle Note Added: 0031281
2016-08-12 09:55 Kitware Robot Note Added: 0037242
2016-08-12 09:55 Kitware Robot Status expired => closed
2016-08-12 09:55 Kitware Robot Resolution open => moved

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