ITK Release 4/Microscopy/Reference Applications

Microscopy Reference Applications

Application Domains

• Cellular tracking (across time)
• Lineage reconstruction (cell tracking + cell division detection)
• Neuron tracing
• Gene expression mapping (3D+t)
• High throughput processing: (thousands of images)
• Image Annotation
• Brain mapping (reverse engineering connections)(fly, mouse)
• Image deconvolution

Software Applications

GoFigure

• https://wiki.med.harvard.edu/SysBio/Megason/GoFigure

Farsight Tookit

• http://www.farsight-toolkit.org/wiki/FARSIGHT_Toolkit

V3D

• http://penglab.janelia.org/proj/v3d/

Slicer

• http://www.slicer.org/