ITK Release 4/Microscopy/Reference Applications: Difference between revisions

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= Software Applications =
= Software Applications =


* GoFigure
== GoFigure ==
** https://wiki.med.harvard.edu/SysBio/Megason/GoFigure
* Farsight Tookit
* https://wiki.med.harvard.edu/SysBio/Megason/GoFigure
** http://www.farsight-toolkit.org/wiki/FARSIGHT_Toolkit
 
* V3D
== Farsight Tookit ==
** http://penglab.janelia.org/proj/v3d/
 
* Slicer
* http://www.farsight-toolkit.org/wiki/FARSIGHT_Toolkit
** http://www.slicer.org/
 
 
== V3D ==
 
[[Image:V3D-Fly-Brain-Screenshot.png‎|right|100px]]
 
* http://penglab.janelia.org/proj/v3d/
 
 
== Slicer ==
 
* http://www.slicer.org/

Revision as of 18:22, 2 August 2010

Microscopy Reference Applications

Application Domains

  • Cellular tracking (across time)
  • Neuron tracing
  • Gene expression mapping (3D+t)
  • High throughput processing: (thousands of images)
  • Image Annotation
  • Brain mapping (reverse engineering connections)(fly, mouse)

Software Applications

GoFigure

Farsight Tookit


V3D

V3D-Fly-Brain-Screenshot.png


Slicer

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