TubeTK/Documentation: Difference between revisions
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'''[[TubeTK|Home]]''' | |||
*[[TubeTK/About|About]] | |||
*[[TubeTK/Images|Image Gallery]] | |||
*[[TubeTK/Data|Data and Publications]] | |||
<br> | |||
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<br> | |||
'''For Users''' | |||
* [[TubeTK/Installation|Installation]] | |||
* [[TubeTK/Documentation|Methods & Apps]] | |||
* [[TubeTK/Slicer|TubeTK with 3D Slicer]] | |||
* [[TubeTK/OsiriX|TubeTK with OsiriX]] | |||
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'''For Developers''' | |||
* [[TubeTK/Development|Development Docs]] | |||
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---- | |||
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'''[https://github.com/TubeTK/TubeTK/issues Report Bugs<br>Request Features]''' | |||
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'''[[TubeTK/Contact|Contact Us]]''' | |||
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= Applications = | |||
# '''GUI Applications''' | |||
# '''Command-line (CLI) Applications''' | |||
#* Command-line applications can be run directly from the command line, or graphically using 3D Slicer | |||
#* [[TubeTK/Documentation/AtlasBuilderUsingIntensity | AtlasBuilderUsingIntensity]] | |||
#* [[TubeTK/Documentation/ComputeBinaryImageSimilarityMetrics | ComputeBinaryImageSimilarityMetrics]] | |||
#* [[TubeTK/Documentation/ComputeImageSimilarityMetrics | ComputeImageSimilarityMetrics]] | |||
#* [[TubeTK/Documentation/ComputeImageStatisticsUsingMask | ComputeImageStatisticsUsingMask]] | |||
#* [[TubeTK/Documentation/ComputeSegmentTubesParameters | ComputeSegmentTubesParameters]] | |||
#* [[TubeTK/Documentation/ComputeTubeGraphProbability | ComputeTubeGraphProbability]] | |||
#* [[TubeTK/Documentation/ComputeTubeMeasures | ComputeTubeMeasures]] | |||
#* [[TubeTK/Documentation/ComputeTubeProbability | ComputeTubeProbability]] | |||
#* [[TubeTK/Documentation/ConvertInnerOpticToPlus | ConvertInnerOpticToPlus]] | |||
#* [[TubeTK/Documentation/ConvertShrunkenSeedImageToList | ConvertShrunkenSeedImageToList]] | |||
#* [[TubeTK/Documentation/ConvertTRE | ConvertTRE]] | |||
#* [[TubeTK/Documentation/ConvertTubeGraphToImage | ConvertTubeGraphToImage]] | |||
#* [[TubeTK/Documentation/ConvertTubesToDensityImage | ConvertTubesToDensityImage]] | |||
#* [[TubeTK/Documentation/ConvertTubesToImage | ConvertTubesToImage]] | |||
#* [[TubeTK/Documentation/ConvertTubesToSurface | ConvertTubesToSurface]] | |||
#* [[TubeTK/Documentation/ConvertTubeToTubeGraph | ConvertTubeToTubeGraph]] | |||
#* [[TubeTK/Documentation/CropImage | CropImage]] | |||
#* [[TubeTK/Documentation/DeblendTomosynthesisSlicesUsingPrior | DeblendTomosynthesisSlicesUsingPrior]] | |||
#* [[TubeTK/Documentation/EnhanceCoherenceAndEdgesUsingDiffusion | EnhanceCoherenceAndEdgesUsingDiffusion]] | |||
#* [[TubeTK/Documentation/EnhanceCoherenceUsingDiffusion | EnhanceCoherenceUsingDiffusion]] | |||
#* [[TubeTK/Documentation/EnhanceContrastUsingPrior | EnhanceContrastUsingPrior]] | |||
#* [[TubeTK/Documentation/EnhanceEdgesUsingDiffusion | EnhanceEdgesUsingDiffusion]] | |||
#* [[TubeTK/Documentation/EnhanceTubesUsingDiffusion | EnhanceTubesUsingDiffusion]] | |||
#* [[TubeTK/Documentation/EnhanceTubesUsingDiscriminantAnalysis | EnhanceTubesUsingDiscriminantAnalysis]] | |||
#* [[TubeTK/Documentation/EnhanceUsingDiscriminantAnalysis | EnhanceUsingDiscriminantAnalysis]] | |||
#* [[TubeTK/Documentation/EnhanceUsingNJetDiscriminantAnalysis | EnhanceUsingNJetDiscriminantAnalysis]] | |||
#* [[TubeTK/Documentation/ImageCompareCommand | ImageCompareCommand]] | |||
#* [[TubeTK/Documentation/JsonCompareCommand | JsonCompareCommand]] | |||
#* [[TubeTK/Documentation/MergeAdjacentImages | MergeAdjacentImages]] | |||
#* [[TubeTK/Documentation/MergeTubeGraphs | MergeTubeGraphs]] | |||
#* [[TubeTK/Documentation/RegisterImages | RegisterImages]] | |||
#* [[TubeTK/Documentation/RegisterUsingImageCenters | RegisterUsingImageCenters]] | |||
#* [[TubeTK/Documentation/RegisterUsingSlidingGeometries | RegisterUsingSlidingGeometries]] | |||
#* [[TubeTK/Documentation/ResampleImage | ResampleImage]] | |||
#* [[TubeTK/Documentation/SampleCLIApplication | SampleCLIApplication]] | |||
#* [[TubeTK/Documentation/SegmentBinaryImageSkeleton | SegmentBinaryImageSkeleton]] | |||
#* [[TubeTK/Documentation/SegmentConnectedComponents | SegmentConnectedComponents]] | |||
#* [[TubeTK/Documentation/SegmentConnectedComponentsUsingParzenPDFs | SegmentConnectedComponentsUsingParzenPDFs]] | |||
#* [[TubeTK/Documentation/SegmentTubes | SegmentTubes]] | |||
#* [[TubeTK/Documentation/SegmentUsingOtsuThreshold | SegmentUsingOtsuThreshold]] | |||
#* [[TubeTK/Documentation/ShrinkImage | ShrinkImage]] | |||
#* [[TubeTK/Documentation/SimulateAcquisitionArtifactsUsingPrior | SimulateAcquisitionArtifactsUsingPrior]] | |||
#* [[TubeTK/Documentation/SubSampleTubes | SubSampleTubes]] | |||
#* [[TubeTK/Documentation/TextCompareCommand | TextCompareCommand]] | |||
#* [[TubeTK/Documentation/TransformTubes | TransformTubes]] | |||
#* [[TubeTK/Documentation/HessianVesselness2D | Hessian Vesselness 2D]] | |||
#* [[TubeTK/Documentation/ExtractCurves2D | Extract Curves 2D]] | |||
#* [[TubeTK/Documentation/ComputeTortuosity | Compute Tortuosity]] | |||
#* [[TubeTK/Documentation/Sliding_Organ_Registration | Sliding Geometries Registration]] | |||
# '''3D Slicer Python Applications''' | |||
#* [[TubeTK/Documentation/InteractivePDFSegmenter | Interactive PDF Segmenter]] | |||
= Modules = | |||
# Pre-processing | |||
#* [[TubeTK/Anisotropic Hybrid Diffusion with Continuous Switch|Anisotropic Hybrid Diffusion with Continuous Switch]] | |||
# Object segmentation | |||
# Tube extraction | |||
#* [[TubeTK/RadiusEstimationFunction|Radius Estimations Functions]] | |||
# Data structures | |||
# Topology analysis | |||
# Editing | |||
# Export | |||
# [[TubeTK/OpenIGTLink|OpenIGTLink]] | |||
# Python | |||
#* [http://nbviewer.ipython.org/5925084 Tube NumPy Array] | |||
= Related Efforts = | |||
* [[TubeTK/Related Work|Related Work]] | |||
|} | |||
[[Category:TubeTK|Documentation]] | |||
Latest revision as of 20:36, 13 October 2015
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