TubeTK/Documentation: Difference between revisions

Latest revision as of 20:36, 13 October 2015

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Home About Image Gallery Data and Publications For Users Installation Methods & Apps TubeTK with 3D Slicer TubeTK with OsiriX For Developers Development Docs Report Bugs Request Features Contact Us	Applications GUI Applications Command-line (CLI) Applications Command-line applications can be run directly from the command line, or graphically using 3D Slicer AtlasBuilderUsingIntensity ComputeBinaryImageSimilarityMetrics ComputeImageSimilarityMetrics ComputeImageStatisticsUsingMask ComputeSegmentTubesParameters ComputeTubeGraphProbability ComputeTubeMeasures ComputeTubeProbability ConvertInnerOpticToPlus ConvertShrunkenSeedImageToList ConvertTRE ConvertTubeGraphToImage ConvertTubesToDensityImage ConvertTubesToImage ConvertTubesToSurface ConvertTubeToTubeGraph CropImage DeblendTomosynthesisSlicesUsingPrior EnhanceCoherenceAndEdgesUsingDiffusion EnhanceCoherenceUsingDiffusion EnhanceContrastUsingPrior EnhanceEdgesUsingDiffusion EnhanceTubesUsingDiffusion EnhanceTubesUsingDiscriminantAnalysis EnhanceUsingDiscriminantAnalysis EnhanceUsingNJetDiscriminantAnalysis ImageCompareCommand JsonCompareCommand MergeAdjacentImages MergeTubeGraphs RegisterImages RegisterUsingImageCenters RegisterUsingSlidingGeometries ResampleImage SampleCLIApplication SegmentBinaryImageSkeleton SegmentConnectedComponents SegmentConnectedComponentsUsingParzenPDFs SegmentTubes SegmentUsingOtsuThreshold ShrinkImage SimulateAcquisitionArtifactsUsingPrior SubSampleTubes TextCompareCommand TransformTubes Hessian Vesselness 2D Extract Curves 2D Compute Tortuosity Sliding Geometries Registration 3D Slicer Python Applications Interactive PDF Segmenter Modules Pre-processing Anisotropic Hybrid Diffusion with Continuous Switch Object segmentation Tube extraction Radius Estimations Functions Data structures Topology analysis Editing Export OpenIGTLink Python Tube NumPy Array Related Efforts Related Work

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+__NOTOC__
+{| border="1" cellpadding="10" cellspacing="0"
+|+ [[image:TubeTK_Header.jpg|1000px]]
+|-
+| style="background:#efefef;" align="left" valign="top" width="150px" |
+'''[[TubeTK|Home]]'''
+*[[TubeTK/About|About]]
+*[[TubeTK/Images|Image Gallery]]
+*[[TubeTK/Data|Data and Publications]]
+<br>
+----
+<br>
+'''For Users'''
+* [[TubeTK/Installation|Installation]]
+* [[TubeTK/Documentation|Methods & Apps]]
+* [[TubeTK/Slicer|TubeTK with 3D Slicer]]
+* [[TubeTK/OsiriX|TubeTK with OsiriX]]
+<br>
+----
+<br>
+'''For Developers'''
+* [[TubeTK/Development|Development Docs]]
+<br>
+----
+<br>
+'''[https://github.com/TubeTK/TubeTK/issues Report Bugs<br>Request Features]'''
+<br>
+<br>
+----
+<br>
+'''[[TubeTK/Contact|Contact Us]]'''
+| width="800px" align="left" |
 = Applications =
-# GUI Applications
+# '''GUI Applications'''
-# Command-line (CLI) Applications
+# '''Command-line (CLI) Applications'''
-#* [[TubeTK/HessianVesselness2D | Hessian Vesselness 2D]]
+#* Command-line applications can be run directly from the command line, or graphically using 3D Slicer
-#* [[TubeTK/ExtractCurves2D | Extract Curves 2D]]
+#* [[TubeTK/Documentation/AtlasBuilderUsingIntensity | AtlasBuilderUsingIntensity]]
+#* [[TubeTK/Documentation/ComputeBinaryImageSimilarityMetrics | ComputeBinaryImageSimilarityMetrics]]
+#* [[TubeTK/Documentation/ComputeImageSimilarityMetrics | ComputeImageSimilarityMetrics]]
+#* [[TubeTK/Documentation/ComputeImageStatisticsUsingMask | ComputeImageStatisticsUsingMask]]
+#* [[TubeTK/Documentation/ComputeSegmentTubesParameters | ComputeSegmentTubesParameters]]
+#* [[TubeTK/Documentation/ComputeTubeGraphProbability | ComputeTubeGraphProbability]]
+#* [[TubeTK/Documentation/ComputeTubeMeasures | ComputeTubeMeasures]]
+#* [[TubeTK/Documentation/ComputeTubeProbability | ComputeTubeProbability]]
+#* [[TubeTK/Documentation/ConvertInnerOpticToPlus | ConvertInnerOpticToPlus]]
+#* [[TubeTK/Documentation/ConvertShrunkenSeedImageToList | ConvertShrunkenSeedImageToList]]
+#* [[TubeTK/Documentation/ConvertTRE | ConvertTRE]]
+#* [[TubeTK/Documentation/ConvertTubeGraphToImage | ConvertTubeGraphToImage]]
+#* [[TubeTK/Documentation/ConvertTubesToDensityImage | ConvertTubesToDensityImage]]
+#* [[TubeTK/Documentation/ConvertTubesToImage | ConvertTubesToImage]]
+#* [[TubeTK/Documentation/ConvertTubesToSurface | ConvertTubesToSurface]]
+#* [[TubeTK/Documentation/ConvertTubeToTubeGraph | ConvertTubeToTubeGraph]]
+#* [[TubeTK/Documentation/CropImage | CropImage]]
+#* [[TubeTK/Documentation/DeblendTomosynthesisSlicesUsingPrior | DeblendTomosynthesisSlicesUsingPrior]]
+#* [[TubeTK/Documentation/EnhanceCoherenceAndEdgesUsingDiffusion | EnhanceCoherenceAndEdgesUsingDiffusion]]
+#* [[TubeTK/Documentation/EnhanceCoherenceUsingDiffusion | EnhanceCoherenceUsingDiffusion]]
+#* [[TubeTK/Documentation/EnhanceContrastUsingPrior | EnhanceContrastUsingPrior]]
+#* [[TubeTK/Documentation/EnhanceEdgesUsingDiffusion | EnhanceEdgesUsingDiffusion]]
+#* [[TubeTK/Documentation/EnhanceTubesUsingDiffusion | EnhanceTubesUsingDiffusion]]
+#* [[TubeTK/Documentation/EnhanceTubesUsingDiscriminantAnalysis | EnhanceTubesUsingDiscriminantAnalysis]]
+#* [[TubeTK/Documentation/EnhanceUsingDiscriminantAnalysis | EnhanceUsingDiscriminantAnalysis]]
+#* [[TubeTK/Documentation/EnhanceUsingNJetDiscriminantAnalysis | EnhanceUsingNJetDiscriminantAnalysis]]
+#* [[TubeTK/Documentation/ImageCompareCommand | ImageCompareCommand]]
+#* [[TubeTK/Documentation/JsonCompareCommand | JsonCompareCommand]]
+#* [[TubeTK/Documentation/MergeAdjacentImages | MergeAdjacentImages]]
+#* [[TubeTK/Documentation/MergeTubeGraphs | MergeTubeGraphs]]
+#* [[TubeTK/Documentation/RegisterImages | RegisterImages]]
+#* [[TubeTK/Documentation/RegisterUsingImageCenters | RegisterUsingImageCenters]]
+#* [[TubeTK/Documentation/RegisterUsingSlidingGeometries | RegisterUsingSlidingGeometries]]
+#* [[TubeTK/Documentation/ResampleImage | ResampleImage]]
+#* [[TubeTK/Documentation/SampleCLIApplication | SampleCLIApplication]]
+#* [[TubeTK/Documentation/SegmentBinaryImageSkeleton | SegmentBinaryImageSkeleton]]
+#* [[TubeTK/Documentation/SegmentConnectedComponents | SegmentConnectedComponents]]
+#* [[TubeTK/Documentation/SegmentConnectedComponentsUsingParzenPDFs | SegmentConnectedComponentsUsingParzenPDFs]]
+#* [[TubeTK/Documentation/SegmentTubes | SegmentTubes]]
+#* [[TubeTK/Documentation/SegmentUsingOtsuThreshold | SegmentUsingOtsuThreshold]]
+#* [[TubeTK/Documentation/ShrinkImage | ShrinkImage]]
+#* [[TubeTK/Documentation/SimulateAcquisitionArtifactsUsingPrior | SimulateAcquisitionArtifactsUsingPrior]]
+#* [[TubeTK/Documentation/SubSampleTubes | SubSampleTubes]]
+#* [[TubeTK/Documentation/TextCompareCommand | TextCompareCommand]]
+#* [[TubeTK/Documentation/TransformTubes | TransformTubes]]
+#* [[TubeTK/Documentation/HessianVesselness2D | Hessian Vesselness 2D]]
+#* [[TubeTK/Documentation/ExtractCurves2D | Extract Curves 2D]]
+#* [[TubeTK/Documentation/ComputeTortuosity | Compute Tortuosity]]
+#* [[TubeTK/Documentation/Sliding_Organ_Registration | Sliding Geometries Registration]]
+# '''3D Slicer Python Applications'''
+#* [[TubeTK/Documentation/InteractivePDFSegmenter | Interactive PDF Segmenter]]
 = Modules =
 # Pre-processing
-#* [[TubeTK/Anisotropic Hybrid Diffusion with Continuous Switch]]
+#* [[TubeTK/Anisotropic Hybrid Diffusion with Continuous Switch|Anisotropic Hybrid Diffusion with Continuous Switch]]
 # Object segmentation
 # Tube extraction
+#* [[TubeTK/RadiusEstimationFunction|Radius Estimations Functions]]
 # Data structures
 # Topology analysis
 # Editing
 # Export
-#  [[TubeTK/OpenIGTLink | OpenIGTLink]]
+#  [[TubeTK/OpenIGTLink|OpenIGTLink]]
+# Python
+#* [http://nbviewer.ipython.org/5925084 Tube NumPy Array]
 = Related Efforts =
-* [[TubeTK/Reference | Reference works]]
+* [[TubeTK/Related Work|Related Work]]
-* [https://musiic.lcsr.jhu.edu Medical Ultrasound Imaging and Intervention Collaboration (MUSIIC)]
-* [http://www.vmtk.org The Vascular Modeling Toolkit (VMTK)]
+|}
+[[Category:TubeTK|Documentation]]

TubeTK/Documentation: Difference between revisions

Latest revision as of 20:36, 13 October 2015

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