vtkMoleculeReaderBase Class Reference

#include <vtkMoleculeReaderBase.h>

Inheritance diagram for vtkMoleculeReaderBase:

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Collaboration diagram for vtkMoleculeReaderBase:

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List of all members.


Detailed Description

read Molecular Data files

vtkMoleculeReaderBase is a source object that reads Molecule files The FileName must be specified

Thanks:
Dr. Jean M. Favre who developed and contributed this class

Definition at line 37 of file vtkMoleculeReaderBase.h.


Public Types

typedef vtkPolyDataAlgorithm Superclass

Public Member Functions

virtual const char * GetClassName ()
virtual int IsA (const char *type)
void PrintSelf (ostream &os, vtkIndent indent)
virtual void SetFileName (const char *)
virtual char * GetFileName ()
virtual int GetNumberOfAtoms ()
virtual void SetBScale (double)
virtual double GetBScale ()
virtual void SetHBScale (double)
virtual double GetHBScale ()

Static Public Member Functions

static int IsTypeOf (const char *type)
static vtkMoleculeReaderBaseSafeDownCast (vtkObject *o)

Protected Member Functions

 vtkMoleculeReaderBase ()
 ~vtkMoleculeReaderBase ()
virtual int RequestData (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
int ReadMolecule (FILE *fp, vtkPolyData *output)
int MakeAtomType (const char *atype)
int MakeBonds (vtkPoints *, vtkIdTypeArray *, vtkCellArray *)
virtual void ReadSpecificMolecule (FILE *fp)=0

Protected Attributes

char * FileName
double BScale
double HBScale
int NumberOfAtoms
vtkPointsPoints
vtkUnsignedCharArrayRGB
vtkFloatArrayRadii
vtkIdTypeArrayAtomType

Member Typedef Documentation

Reimplemented from vtkPolyDataAlgorithm.

Reimplemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.

Definition at line 40 of file vtkMoleculeReaderBase.h.


Constructor & Destructor Documentation

vtkMoleculeReaderBase::vtkMoleculeReaderBase (  )  [protected]

vtkMoleculeReaderBase::~vtkMoleculeReaderBase (  )  [protected]


Member Function Documentation

virtual const char* vtkMoleculeReaderBase::GetClassName (  )  [virtual]

Reimplemented from vtkPolyDataAlgorithm.

Reimplemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.

static int vtkMoleculeReaderBase::IsTypeOf ( const char *  name  )  [static]

Return 1 if this class type is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeRevisionMacro found in vtkSetGet.h.

Reimplemented from vtkPolyDataAlgorithm.

Reimplemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.

virtual int vtkMoleculeReaderBase::IsA ( const char *  name  )  [virtual]

Return 1 if this class is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeRevisionMacro found in vtkSetGet.h.

Reimplemented from vtkPolyDataAlgorithm.

Reimplemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.

static vtkMoleculeReaderBase* vtkMoleculeReaderBase::SafeDownCast ( vtkObject o  )  [static]

Reimplemented from vtkPolyDataAlgorithm.

Reimplemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.

void vtkMoleculeReaderBase::PrintSelf ( ostream &  os,
vtkIndent  indent 
) [virtual]

Methods invoked by print to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkPolyDataAlgorithm.

Reimplemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.

virtual void vtkMoleculeReaderBase::SetFileName ( const char *   )  [virtual]

Reimplemented in vtkGaussianCubeReader.

virtual char* vtkMoleculeReaderBase::GetFileName (  )  [virtual]

Reimplemented in vtkGaussianCubeReader.

virtual void vtkMoleculeReaderBase::SetBScale ( double   )  [virtual]

A scaling factor to compute bonds between non-hydrogen atoms

virtual double vtkMoleculeReaderBase::GetBScale (  )  [virtual]

A scaling factor to compute bonds between non-hydrogen atoms

virtual void vtkMoleculeReaderBase::SetHBScale ( double   )  [virtual]

A scaling factor to compute bonds with hydrogen atoms.

virtual double vtkMoleculeReaderBase::GetHBScale (  )  [virtual]

A scaling factor to compute bonds with hydrogen atoms.

virtual int vtkMoleculeReaderBase::GetNumberOfAtoms (  )  [virtual]

virtual int vtkMoleculeReaderBase::RequestData ( vtkInformation request,
vtkInformationVector **  inputVector,
vtkInformationVector outputVector 
) [protected, virtual]

This is called by the superclass. This is the method you should override.

Reimplemented from vtkPolyDataAlgorithm.

Reimplemented in vtkGaussianCubeReader.

int vtkMoleculeReaderBase::ReadMolecule ( FILE *  fp,
vtkPolyData output 
) [protected]

int vtkMoleculeReaderBase::MakeAtomType ( const char *  atype  )  [protected]

int vtkMoleculeReaderBase::MakeBonds ( vtkPoints ,
vtkIdTypeArray ,
vtkCellArray  
) [protected]

virtual void vtkMoleculeReaderBase::ReadSpecificMolecule ( FILE *  fp  )  [protected, pure virtual]


Member Data Documentation

Reimplemented in vtkGaussianCubeReader.

Definition at line 64 of file vtkMoleculeReaderBase.h.

double vtkMoleculeReaderBase::BScale [protected]

Definition at line 65 of file vtkMoleculeReaderBase.h.

double vtkMoleculeReaderBase::HBScale [protected]

Definition at line 66 of file vtkMoleculeReaderBase.h.

Definition at line 67 of file vtkMoleculeReaderBase.h.

Definition at line 74 of file vtkMoleculeReaderBase.h.

Definition at line 75 of file vtkMoleculeReaderBase.h.

Definition at line 76 of file vtkMoleculeReaderBase.h.

Definition at line 77 of file vtkMoleculeReaderBase.h.


The documentation for this class was generated from the following file:

Generated on Sat Dec 27 13:37:52 2008 for VTK by  doxygen 1.5.6