generates protein ribbons More...

#include <vtkProteinRibbonFilter.h>

Inheritance diagram for vtkProteinRibbonFilter:

Collaboration diagram for vtkProteinRibbonFilter:

Public Types
typedef vtkPolyDataAlgorithm	Superclass
Public Member Functions
virtual int	IsA (const char *type)
vtkProteinRibbonFilter *	NewInstance () const
void	PrintSelf (ostream &os, vtkIndent indent)

virtual float	GetCoilWidth ()
virtual void	SetCoilWidth (float)

virtual float	GetHelixWidth ()
virtual void	SetHelixWidth (float)

virtual int	GetSubdivideFactor ()
virtual void	SetSubdivideFactor (int)

virtual bool	GetDrawSmallMoleculesAsSpheres ()
virtual void	SetDrawSmallMoleculesAsSpheres (bool)

virtual int	GetSphereResolution ()
virtual void	SetSphereResolution (int)
Static Public Member Functions
static int	IsTypeOf (const char *type)
static vtkProteinRibbonFilter *	SafeDownCast (vtkObjectBase *o)
static vtkProteinRibbonFilter *	New ()
Protected Member Functions
virtual vtkObjectBase *	NewInstanceInternal () const
	vtkProteinRibbonFilter ()
	~vtkProteinRibbonFilter ()
int	FillInputPortInformation (int, vtkInformation *)
int	RequestData (vtkInformation , vtkInformationVector , vtkInformationVector )
void	CreateThinStrip (vtkPolyData poly, vtkUnsignedCharArray pointsColors, vtkPoints *p, std::vector< std::pair< vtkVector3f, bool > > &p1, std::vector< std::pair< vtkVector3f, bool > > &p2, std::vector< vtkColor3ub > &colors)
void	CreateAtomAsSphere (vtkPolyData poly, vtkUnsignedCharArray pointsColors, double *pos, const vtkColor3ub &color, float radius, float scale)
void	SetColorByAtom (std::vector< vtkColor3ub > &colors, vtkStringArray *atomTypes)
void	SetColorByStructure (std::vector< vtkColor3ub > &colors, vtkStringArray atomTypes, vtkUnsignedCharArray ss, const vtkColor3ub &helixColor, const vtkColor3ub &sheetColor)
Static Protected Member Functions
static std::vector< vtkVector3f > *	Subdivide (std::vector< std::pair< vtkVector3f, bool > > &p, int div)
Protected Attributes
std::map< std::string, vtkColor3ub >	ElementColors
float	CoilWidth
float	HelixWidth
int	SphereResolution
int	SubdivideFactor
bool	DrawSmallMoleculesAsSpheres

Detailed Description

generates protein ribbons

vtkProteinRibbonFilter is a polydata algorithm that generates protein ribbons.

Tests:: vtkProteinRibbonFilter (Tests)

Definition at line 38 of file vtkProteinRibbonFilter.h.

Member Typedef Documentation

typedef vtkPolyDataAlgorithm vtkProteinRibbonFilter::Superclass

Reimplemented from vtkPolyDataAlgorithm.

Definition at line 42 of file vtkProteinRibbonFilter.h.

Constructor & Destructor Documentation

vtkProteinRibbonFilter::vtkProteinRibbonFilter ( ) [protected]

vtkProteinRibbonFilter::~vtkProteinRibbonFilter ( ) [protected]

Member Function Documentation

static int vtkProteinRibbonFilter::IsTypeOf ( const char * name ) [static]

Return 1 if this class type is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkPolyDataAlgorithm.

virtual int vtkProteinRibbonFilter::IsA ( const char * name ) [virtual]

Return 1 if this class is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkPolyDataAlgorithm.

static vtkProteinRibbonFilter* vtkProteinRibbonFilter::SafeDownCast ( vtkObjectBase * o ) [static]

Reimplemented from vtkPolyDataAlgorithm.

virtual vtkObjectBase* vtkProteinRibbonFilter::NewInstanceInternal ( ) const [protected, virtual]

Reimplemented from vtkPolyDataAlgorithm.

vtkProteinRibbonFilter* vtkProteinRibbonFilter::NewInstance ( ) const

Reimplemented from vtkPolyDataAlgorithm.

void vtkProteinRibbonFilter::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)		`[virtual]`

Methods invoked by print to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkPolyDataAlgorithm.

static vtkProteinRibbonFilter* vtkProteinRibbonFilter::New ( ) [static]

Create an object with Debug turned off, modified time initialized to zero, and reference counting on.

Reimplemented from vtkPolyDataAlgorithm.

virtual float vtkProteinRibbonFilter::GetCoilWidth ( ) [virtual]

Width of the ribbon coil. Default is 0.3.

virtual void vtkProteinRibbonFilter::SetCoilWidth ( float ) [virtual]

Width of the ribbon coil. Default is 0.3.

virtual float vtkProteinRibbonFilter::GetHelixWidth ( ) [virtual]

Width of the helix part of the ribbon. Default is 1.3.

virtual void vtkProteinRibbonFilter::SetHelixWidth ( float ) [virtual]

Width of the helix part of the ribbon. Default is 1.3.

virtual int vtkProteinRibbonFilter::GetSubdivideFactor ( ) [virtual]

Smoothing factor of the ribbon. Default is 20.

virtual void vtkProteinRibbonFilter::SetSubdivideFactor ( int ) [virtual]

Smoothing factor of the ribbon. Default is 20.

virtual bool vtkProteinRibbonFilter::GetDrawSmallMoleculesAsSpheres ( ) [virtual]

If enabled, small molecules (HETATMs) are drawn as spheres. Default is true.

virtual void vtkProteinRibbonFilter::SetDrawSmallMoleculesAsSpheres ( bool ) [virtual]

If enabled, small molecules (HETATMs) are drawn as spheres. Default is true.

virtual int vtkProteinRibbonFilter::GetSphereResolution ( ) [virtual]

Resolution of the spheres for small molecules. Default is 20.

virtual void vtkProteinRibbonFilter::SetSphereResolution ( int ) [virtual]

Resolution of the spheres for small molecules. Default is 20.

int vtkProteinRibbonFilter::FillInputPortInformation	(	int	port,
		vtkInformation *	info
	)		`[protected, virtual]`

Fill the input port information objects for this algorithm. This is invoked by the first call to GetInputPortInformation for each port so subclasses can specify what they can handle.

Reimplemented from vtkPolyDataAlgorithm.

int vtkProteinRibbonFilter::RequestData	(	vtkInformation *	request,
		vtkInformationVector **	inputVector,
		vtkInformationVector *	outputVector
	)		`[protected, virtual]`

This is called by the superclass. This is the method you should override.

Reimplemented from vtkPolyDataAlgorithm.

void vtkProteinRibbonFilter::CreateThinStrip	(	vtkPolyData *	poly,
		vtkUnsignedCharArray *	pointsColors,
		vtkPoints *	p,
		std::vector< std::pair< vtkVector3f, bool > > &	p1,
		std::vector< std::pair< vtkVector3f, bool > > &	p2,
		std::vector< vtkColor3ub > &	colors
	)		`[protected]`

void vtkProteinRibbonFilter::CreateAtomAsSphere	(	vtkPolyData *	poly,
		vtkUnsignedCharArray *	pointsColors,
		double *	pos,
		const vtkColor3ub &	color,
		float	radius,
		float	scale
	)		`[protected]`

static std::vector<vtkVector3f>* vtkProteinRibbonFilter::Subdivide	(	std::vector< std::pair< vtkVector3f, bool > > &	p,
		int	div
	)		`[static, protected]`

void vtkProteinRibbonFilter::SetColorByAtom	(	std::vector< vtkColor3ub > &	colors,
		vtkStringArray *	atomTypes
	)		`[protected]`

void vtkProteinRibbonFilter::SetColorByStructure	(	std::vector< vtkColor3ub > &	colors,
		vtkStringArray *	atomTypes,
		vtkUnsignedCharArray *	ss,
		const vtkColor3ub &	helixColor,
		const vtkColor3ub &	sheetColor
	)		`[protected]`