vtkNewickTreeReader Class Reference

read vtkTree from Newick formatted file More...

#include <vtkNewickTreeReader.h>

Inheritance diagram for vtkNewickTreeReader:

Collaboration diagram for vtkNewickTreeReader:

List of all members.

Public Types
typedef vtkDataReader	Superclass
Public Member Functions
virtual int	IsA (const char *type)
vtkNewickTreeReader *	NewInstance () const
void	PrintSelf (ostream &os, vtkIndent indent)
vtkTree *	GetOutput ()
vtkTree *	GetOutput (int idx)
void	SetOutput (vtkTree *output)
int	ReadNewickTree (const char *buffer, vtkTree &tree)
Static Public Member Functions
static vtkNewickTreeReader *	New ()
static int	IsTypeOf (const char *type)
static vtkNewickTreeReader *	SafeDownCast (vtkObjectBase *o)
Protected Member Functions
virtual vtkObjectBase *	NewInstanceInternal () const
	vtkNewickTreeReader ()
	~vtkNewickTreeReader ()
virtual int	RequestData (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
virtual int	RequestUpdateExtent (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
virtual int	FillOutputPortInformation (int, vtkInformation *)
void	CountNodes (const char *buffer, vtkIdType *numNodes)
vtkIdType	BuildTree (char *buffer, vtkMutableDirectedGraph *g, vtkDoubleArray *weights, vtkStringArray *names, vtkIdType parent)

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Detailed Description

read vtkTree from Newick formatted file

vtkNewickTreeReader is a source object that reads Newick tree format files. The output of this reader is a single vtkTree data object. The superclass of this class, vtkDataReader, provides many methods for controlling the reading of the data file, see vtkDataReader for more information.

Thanks:

This class is adapted from code originally written by Yu-Wei Wu.

See also:

vtkTree vtkDataReader

Tests:

vtkNewickTreeReader (Tests)

Definition at line 44 of file vtkNewickTreeReader.h.

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Member Typedef Documentation

typedef vtkDataReader vtkNewickTreeReader::Superclass

Reimplemented from vtkDataReader.

Definition at line 48 of file vtkNewickTreeReader.h.

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Constructor & Destructor Documentation

vtkNewickTreeReader::vtkNewickTreeReader

(

)

[protected]

vtkNewickTreeReader::~vtkNewickTreeReader

(

)

[protected]

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Member Function Documentation

static vtkNewickTreeReader* vtkNewickTreeReader::New

(

)

[static]

Create an object with Debug turned off, modified time initialized to zero, and reference counting on.

Reimplemented from vtkDataReader.

static int vtkNewickTreeReader::IsTypeOf

(

const char *

name

)

[static]

Return 1 if this class type is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkDataReader.

virtual int vtkNewickTreeReader::IsA

(

const char *

name

)

[virtual]

Return 1 if this class is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkDataReader.

static vtkNewickTreeReader* vtkNewickTreeReader::SafeDownCast

(

vtkObjectBase *

o

)

[static]

Reimplemented from vtkDataReader.

virtual vtkObjectBase* vtkNewickTreeReader::NewInstanceInternal

(

)

const [protected, virtual]

Reimplemented from vtkDataReader.

vtkNewickTreeReader* vtkNewickTreeReader::NewInstance

(

)

const

Reimplemented from vtkDataReader.

void vtkNewickTreeReader::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)		[virtual]

Methods invoked by print to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkDataReader.

vtkTree* vtkNewickTreeReader::GetOutput

(

)

Get the output of this reader.

vtkTree* vtkNewickTreeReader::GetOutput

(

int

idx

)

Get the output of this reader.

void vtkNewickTreeReader::SetOutput

(

vtkTree *

output

)

Get the output of this reader.

int vtkNewickTreeReader::ReadNewickTree	(	const char *	buffer,
		vtkTree &	tree
	)

Get the output of this reader.

virtual int vtkNewickTreeReader::RequestData	(	vtkInformation *	,
		vtkInformationVector **	,
		vtkInformationVector *
	)		[protected, virtual]

Reimplemented from vtkDataReader.

virtual int vtkNewickTreeReader::RequestUpdateExtent	(	vtkInformation *	,
		vtkInformationVector **	,
		vtkInformationVector *
	)		[protected, virtual]

Reimplemented from vtkDataReader.

virtual int vtkNewickTreeReader::FillOutputPortInformation	(	int	port,
		vtkInformation *	info
	)		[protected, virtual]

Fill the output port information objects for this algorithm. This is invoked by the first call to GetOutputPortInformation for each port so subclasses can specify what they can handle.

Reimplemented from vtkAlgorithm.

void vtkNewickTreeReader::CountNodes	(	const char *	buffer,
		vtkIdType *	numNodes
	)		[protected]

vtkIdType vtkNewickTreeReader::BuildTree	(	char *	buffer,
		vtkMutableDirectedGraph *	g,
		vtkDoubleArray *	weights,
		vtkStringArray *	names,
		vtkIdType	parent
	)		[protected]

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The documentation for this class was generated from the following file:

• dox/IO/Infovis/vtkNewickTreeReader.h