read binary UNC meta image data More...

#include <vtkMetaImageReader.h>

Inheritance diagram for vtkMetaImageReader:

Collaboration diagram for vtkMetaImageReader:

Public Types
typedef vtkImageReader2	Superclass

Public Types inherited from vtkImageReader2
typedef vtkImageAlgorithm	Superclass

Public Types inherited from vtkImageAlgorithm
typedef vtkAlgorithm	Superclass

Public Types inherited from vtkAlgorithm
enum	DesiredOutputPrecision { SINGLE_PRECISION, DOUBLE_PRECISION, DEFAULT_PRECISION }
	Values used for setting the desired output precision for various algorithms. More...

typedef vtkObject	Superclass

Public Member Functions
virtual int	IsA (const char *type)
	Return 1 if this class is the same type of (or a subclass of) the named class. More...

vtkMetaImageReader *	NewInstance () const

void	PrintSelf (ostream &os, vtkIndent indent)
	Methods invoked by print to print information about the object including superclasses. More...

virtual const char *	GetFileExtensions ()
	Get the file extensions for this format. More...

virtual const char *	GetDescriptiveName ()
	Return a descriptive name for the file format that might be useful in a GUI. More...

double *	GetPixelSpacing ()

int	GetWidth ()

int	GetHeight ()

double *	GetImagePositionPatient ()

int	GetNumberOfComponents ()

int	GetPixelRepresentation ()

int	GetDataByteOrder (void)
	These methods should be used instead of the SwapBytes methods. More...

virtual double	GetRescaleSlope ()

virtual double	GetRescaleOffset ()

virtual int	GetBitsAllocated ()

virtual char *	GetDistanceUnits ()

virtual char *	GetAnatomicalOrientation ()

virtual double	GetGantryAngle ()

virtual char *	GetPatientName ()

virtual char *	GetPatientID ()

virtual char *	GetDate ()

virtual char *	GetSeries ()

virtual char *	GetImageNumber ()

virtual char *	GetModality ()

virtual char *	GetStudyID ()

virtual char *	GetStudyUID ()

virtual char *	GetTransferSyntaxUID ()

virtual int	CanReadFile (const char *name)
	Test whether the file with the given name can be read by this reader. More...

Public Member Functions inherited from vtkImageReader2
vtkImageReader2 *	NewInstance () const

virtual void	SetMemoryBuffer (void *)
	Specify the in memory image buffer. More...

virtual void *	GetMemoryBuffer ()

virtual void	SetMemoryBufferLength (vtkIdType buflen)
	Specify the in memory image buffer length. More...

vtkIdType	GetMemoryBufferLength ()

virtual void	SetDataScalarType (int type)
	Set the data type of pixels in the file. More...

virtual void	SetDataScalarTypeToFloat ()

virtual void	SetDataScalarTypeToDouble ()

virtual void	SetDataScalarTypeToInt ()

virtual void	SetDataScalarTypeToUnsignedInt ()

virtual void	SetDataScalarTypeToShort ()

virtual void	SetDataScalarTypeToUnsignedShort ()

virtual void	SetDataScalarTypeToChar ()

virtual void	SetDataScalarTypeToSignedChar ()

virtual void	SetDataScalarTypeToUnsignedChar ()

virtual void	SetHeaderSize (unsigned long size)
	If there is a tail on the file, you want to explicitly set the header size. More...

ifstream *	GetFile ()

virtual unsigned long *	GetDataIncrements ()

virtual void	GetDataIncrements (unsigned long data[4])

virtual int	OpenFile ()

virtual void	SeekFile (int i, int j, int k)

virtual int	CanReadFile (const char *vtkNotUsed(fname))
	Return non zero if the reader can read the given file name. More...

virtual void	SetFileName (const char *)
	Specify file name for the image file. More...

virtual char *	GetFileName ()
	Specify file name for the image file. More...

virtual void	SetFileNames (vtkStringArray *)
	Specify a list of file names. More...

virtual vtkStringArray *	GetFileNames ()
	Specify a list of file names. More...

virtual void	SetFilePrefix (const char *)
	Specify file prefix for the image file or files. More...

virtual char *	GetFilePrefix ()
	Specify file prefix for the image file or files. More...

virtual void	SetFilePattern (const char *)
	The sprintf-style format string used to build filename from FilePrefix and slice number. More...

virtual char *	GetFilePattern ()
	The sprintf-style format string used to build filename from FilePrefix and slice number. More...

virtual int	GetDataScalarType ()
	Get the file format. More...

virtual void	SetNumberOfScalarComponents (int)
	Set/Get the number of scalar components. More...

virtual int	GetNumberOfScalarComponents ()
	Set/Get the number of scalar components. More...

virtual void	SetDataExtent (int, int, int, int, int, int)
	Get/Set the extent of the data on disk. More...

virtual void	SetDataExtent (int[6])
	Get/Set the extent of the data on disk. More...

virtual int *	GetDataExtent ()
	Get/Set the extent of the data on disk. More...

virtual void	GetDataExtent (int &, int &, int &, int &, int &, int &)
	Get/Set the extent of the data on disk. More...

virtual void	GetDataExtent (int[6])
	Get/Set the extent of the data on disk. More...

virtual void	SetFileDimensionality (int)
	The number of dimensions stored in a file. More...

int	GetFileDimensionality ()
	The number of dimensions stored in a file. More...

virtual void	SetDataSpacing (double, double, double)
	Set/Get the spacing of the data in the file. More...

virtual void	SetDataSpacing (double[3])
	Set/Get the spacing of the data in the file. More...

virtual double *	GetDataSpacing ()
	Set/Get the spacing of the data in the file. More...

virtual void	GetDataSpacing (double &, double &, double &)
	Set/Get the spacing of the data in the file. More...

virtual void	GetDataSpacing (double[3])
	Set/Get the spacing of the data in the file. More...

virtual void	SetDataOrigin (double, double, double)
	Set/Get the origin of the data (location of first pixel in the file). More...

virtual void	SetDataOrigin (double[3])
	Set/Get the origin of the data (location of first pixel in the file). More...

virtual double *	GetDataOrigin ()
	Set/Get the origin of the data (location of first pixel in the file). More...

virtual void	GetDataOrigin (double &, double &, double &)
	Set/Get the origin of the data (location of first pixel in the file). More...

virtual void	GetDataOrigin (double[3])
	Set/Get the origin of the data (location of first pixel in the file). More...

unsigned long	GetHeaderSize ()
	Get the size of the header computed by this object. More...

unsigned long	GetHeaderSize (unsigned long slice)
	Get the size of the header computed by this object. More...

virtual void	SetDataByteOrderToBigEndian ()
	These methods should be used instead of the SwapBytes methods. More...

virtual void	SetDataByteOrderToLittleEndian ()
	These methods should be used instead of the SwapBytes methods. More...

virtual void	SetDataByteOrder (int)
	These methods should be used instead of the SwapBytes methods. More...

virtual const char *	GetDataByteOrderAsString ()
	These methods should be used instead of the SwapBytes methods. More...

virtual void	SetFileNameSliceOffset (int)
	When reading files which start at an unusual index, this can be added to the slice number when generating the file name (default = 0) More...

virtual int	GetFileNameSliceOffset ()
	When reading files which start at an unusual index, this can be added to the slice number when generating the file name (default = 0) More...

virtual void	SetFileNameSliceSpacing (int)
	When reading files which have regular, but non contiguous slices (eg filename.1,filename.3,filename.5) a spacing can be specified to skip missing files (default = 1) More...

virtual int	GetFileNameSliceSpacing ()
	When reading files which have regular, but non contiguous slices (eg filename.1,filename.3,filename.5) a spacing can be specified to skip missing files (default = 1) More...

virtual void	SetSwapBytes (int)
	Set/Get the byte swapping to explicitly swap the bytes of a file. More...

virtual int	GetSwapBytes ()
	Set/Get the byte swapping to explicitly swap the bytes of a file. More...

virtual void	SwapBytesOn ()
	Set/Get the byte swapping to explicitly swap the bytes of a file. More...

virtual void	SwapBytesOff ()
	Set/Get the byte swapping to explicitly swap the bytes of a file. More...

virtual void	FileLowerLeftOn ()
	Set/Get whether the data comes from the file starting in the lower left corner or upper left corner. More...

virtual void	FileLowerLeftOff ()
	Set/Get whether the data comes from the file starting in the lower left corner or upper left corner. More...

virtual int	GetFileLowerLeft ()
	Set/Get whether the data comes from the file starting in the lower left corner or upper left corner. More...

virtual void	SetFileLowerLeft (int)
	Set/Get whether the data comes from the file starting in the lower left corner or upper left corner. More...

virtual void	ComputeInternalFileName (int slice)
	Set/Get the internal file name. More...

virtual char *	GetInternalFileName ()
	Set/Get the internal file name. More...

Public Member Functions inherited from vtkImageAlgorithm
vtkImageAlgorithm *	NewInstance () const

int	ProcessRequest (vtkInformation , vtkInformationVector , vtkInformationVector ) override
	Process a request from the executive. More...

vtkImageData *	GetOutput ()
	Get the output data object for a port on this algorithm. More...

vtkImageData *	GetOutput (int)
	Get the output data object for a port on this algorithm. More...

virtual void	SetOutput (vtkDataObject *d)
	Get the output data object for a port on this algorithm. More...

void	SetInputData (vtkDataObject *)
	Assign a data object as input. More...

void	SetInputData (int, vtkDataObject *)
	Assign a data object as input. More...

vtkDataObject *	GetInput (int port)
	Get a data object for one of the input port connections. More...

vtkDataObject *	GetInput ()
	Get a data object for one of the input port connections. More...

vtkImageData *	GetImageDataInput (int port)
	Get a data object for one of the input port connections. More...

virtual void	AddInputData (vtkDataObject *)
	Assign a data object as input. More...

virtual void	AddInputData (int, vtkDataObject *)
	Assign a data object as input. More...

Public Member Functions inherited from vtkAlgorithm
vtkAlgorithm *	NewInstance () const

int	HasExecutive ()
	Check whether this algorithm has an assigned executive. More...

vtkExecutive *	GetExecutive ()
	Get this algorithm's executive. More...

virtual void	SetExecutive (vtkExecutive *executive)
	Set this algorithm's executive. More...

int	ProcessRequest (vtkInformation request, vtkCollection inInfo, vtkInformationVector *outInfo)
	Version of ProcessRequest() that is wrapped. More...

virtual int	ComputePipelineMTime (vtkInformation request, vtkInformationVector inInfoVec, vtkInformationVector outInfoVec, int requestFromOutputPort, vtkMTimeType *mtime)
	A special version of ProcessRequest meant specifically for the pipeline modified time request. More...

virtual int	ModifyRequest (vtkInformation *request, int when)
	This method gives the algorithm a chance to modify the contents of a request before or after (specified in the when argument) it is forwarded. More...

vtkInformation *	GetInputPortInformation (int port)
	Get the information object associated with an input port. More...

vtkInformation *	GetOutputPortInformation (int port)
	Get the information object associated with an output port. More...

int	GetNumberOfInputPorts ()
	Get the number of input ports used by the algorithm. More...

int	GetNumberOfOutputPorts ()
	Get the number of output ports provided by the algorithm. More...

void	UpdateProgress (double amount)
	Update the progress of the process object. More...

virtual void	SetInputArrayToProcess (int idx, int port, int connection, const char fieldAssociation, const char attributeTypeorName)
	String based versions of SetInputArrayToProcess(). More...

vtkInformation *	GetInputArrayInformation (int idx)
	Get the info object for the specified input array to this algorithm. More...

void	RemoveAllInputs ()
	Remove all the input data. More...

vtkDataObject *	GetOutputDataObject (int port)
	Get the data object that will contain the algorithm output for the given port. More...

vtkDataObject *	GetInputDataObject (int port, int connection)
	Get the data object that will contain the algorithm input for the given port and given connection. More...

virtual void	RemoveInputConnection (int port, vtkAlgorithmOutput *input)
	Remove a connection from the given input port index. More...

virtual void	RemoveInputConnection (int port, int idx)
	Remove a connection given by index idx. More...

virtual void	RemoveAllInputConnections (int port)
	Removes all input connections. More...

virtual void	SetInputDataObject (int port, vtkDataObject *data)
	Sets the data-object as an input on the given port index. More...

virtual void	SetInputDataObject (vtkDataObject *data)

virtual void	AddInputDataObject (int port, vtkDataObject *data)
	Add the data-object as an input to this given port. More...

virtual void	AddInputDataObject (vtkDataObject *data)

vtkAlgorithmOutput *	GetOutputPort (int index)
	Get a proxy object corresponding to the given output port of this algorithm. More...

vtkAlgorithmOutput *	GetOutputPort ()

int	GetNumberOfInputConnections (int port)
	Get the number of inputs currently connected to a port. More...

int	GetTotalNumberOfInputConnections ()
	Get the total number of inputs for this algorithm. More...

vtkAlgorithmOutput *	GetInputConnection (int port, int index)
	Get the algorithm output port connected to an input port. More...

vtkAlgorithm *	GetInputAlgorithm (int port, int index, int &algPort)
	Returns the algorithm and the output port index of that algorithm connected to a port-index pair. More...

vtkAlgorithm *	GetInputAlgorithm (int port, int index)
	Returns the algorithm connected to a port-index pair. More...

vtkAlgorithm *	GetInputAlgorithm ()
	Equivalent to GetInputAlgorithm(0, 0). More...

vtkExecutive *	GetInputExecutive (int port, int index)
	Returns the executive associated with a particular input connection. More...

vtkExecutive *	GetInputExecutive ()
	Equivalent to GetInputExecutive(0, 0) More...

vtkInformation *	GetInputInformation (int port, int index)
	Return the information object that is associated with a particular input connection. More...

vtkInformation *	GetInputInformation ()
	Equivalent to GetInputInformation(0, 0) More...

vtkInformation *	GetOutputInformation (int port)
	Return the information object that is associated with a particular output port. More...

virtual int	Update (int port, vtkInformationVector *requests)
	This method enables the passing of data requests to the algorithm to be used during execution (in addition to bringing a particular port up-to-date). More...

virtual int	Update (vtkInformation *requests)
	Convenience method to update an algorithm after passing requests to its first output port. More...

virtual int	UpdatePiece (int piece, int numPieces, int ghostLevels, const int extents[6]=0)
	Convenience method to update an algorithm after passing requests to its first output port. More...

virtual int	UpdateExtent (const int extents[6])
	Convenience method to update an algorithm after passing requests to its first output port. More...

virtual int	UpdateTimeStep (double time, int piece=-1, int numPieces=1, int ghostLevels=0, const int extents[6]=0)
	Convenience method to update an algorithm after passing requests to its first output port. More...

virtual void	UpdateInformation ()
	Bring the algorithm's information up-to-date. More...

virtual void	UpdateDataObject ()
	Create output object(s). More...

virtual void	PropagateUpdateExtent ()
	Propagate meta-data upstream. More...

virtual void	UpdateWholeExtent ()
	Bring this algorithm's outputs up-to-date. More...

void	ConvertTotalInputToPortConnection (int ind, int &port, int &conn)
	Convenience routine to convert from a linear ordering of input connections to a port/connection pair. More...

int	SetUpdateExtentToWholeExtent (int port)
	If the whole output extent is required, this method can be called to set the output update extent to the whole extent. More...

int	SetUpdateExtentToWholeExtent ()
	Convenience function equivalent to SetUpdateExtentToWholeExtent(0) This method assumes that the whole extent is known (that UpdateInformation has been called). More...

void	SetUpdateExtent (int port, int piece, int numPieces, int ghostLevel)
	Set the output update extent in terms of piece and ghost levels. More...

void	SetUpdateExtent (int piece, int numPieces, int ghostLevel)
	Convenience function equivalent to SetUpdateExtent(0, piece, numPieces, ghostLevel) More...

void	SetUpdateExtent (int port, int extent[6])
	Set the output update extent for data objects that use 3D extents. More...

void	SetUpdateExtent (int extent[6])
	Convenience function equivalent to SetUpdateExtent(0, extent) More...

virtual vtkInformation *	GetInformation ()
	Set/Get the information object associated with this algorithm. More...

virtual void	SetInformation (vtkInformation *)
	Set/Get the information object associated with this algorithm. More...

void	Register (vtkObjectBase *o) override
	Participate in garbage collection. More...

void	UnRegister (vtkObjectBase *o) override
	Participate in garbage collection. More...

virtual void	SetAbortExecute (int)
	Set/Get the AbortExecute flag for the process object. More...

virtual int	GetAbortExecute ()
	Set/Get the AbortExecute flag for the process object. More...

virtual void	AbortExecuteOn ()
	Set/Get the AbortExecute flag for the process object. More...

virtual void	AbortExecuteOff ()
	Set/Get the AbortExecute flag for the process object. More...

virtual void	SetProgress (double)
	Set/Get the execution progress of a process object. More...

virtual double	GetProgress ()
	Set/Get the execution progress of a process object. More...

void	SetProgressText (const char *ptext)
	Set the current text message associated with the progress state. More...

virtual char *	GetProgressText ()
	Set the current text message associated with the progress state. More...

virtual unsigned long	GetErrorCode ()
	The error code contains a possible error that occurred while reading or writing the file. More...

virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, const char *name)
	Set the input data arrays that this algorithm will process. More...

virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, int fieldAttributeType)
	Set the input data arrays that this algorithm will process. More...

virtual void	SetInputArrayToProcess (int idx, vtkInformation *info)
	Set the input data arrays that this algorithm will process. More...

virtual void	SetInputConnection (int port, vtkAlgorithmOutput *input)
	Set the connection for the given input port index. More...

virtual void	SetInputConnection (vtkAlgorithmOutput *input)
	Set the connection for the given input port index. More...

virtual void	AddInputConnection (int port, vtkAlgorithmOutput *input)
	Add a connection to the given input port index. More...

virtual void	AddInputConnection (vtkAlgorithmOutput *input)
	Add a connection to the given input port index. More...

virtual void	Update (int port)
	Bring this algorithm's outputs up-to-date. More...

virtual void	Update ()
	Bring this algorithm's outputs up-to-date. More...

virtual void	SetReleaseDataFlag (int)
	Turn release data flag on or off for all output ports. More...

virtual int	GetReleaseDataFlag ()
	Turn release data flag on or off for all output ports. More...

void	ReleaseDataFlagOn ()
	Turn release data flag on or off for all output ports. More...

void	ReleaseDataFlagOff ()
	Turn release data flag on or off for all output ports. More...

int	UpdateExtentIsEmpty (vtkInformation pinfo, vtkDataObject output)
	This detects when the UpdateExtent will generate no data This condition is satisfied when the UpdateExtent has zero volume (0,-1,...) or the UpdateNumberOfPieces is 0. More...

int	UpdateExtentIsEmpty (vtkInformation *pinfo, int extentType)
	This detects when the UpdateExtent will generate no data This condition is satisfied when the UpdateExtent has zero volume (0,-1,...) or the UpdateNumberOfPieces is 0. More...

int *	GetUpdateExtent ()
	These functions return the update extent for output ports that use 3D extents. More...

int *	GetUpdateExtent (int port)
	These functions return the update extent for output ports that use 3D extents. More...

void	GetUpdateExtent (int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)
	These functions return the update extent for output ports that use 3D extents. More...

void	GetUpdateExtent (int port, int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)
	These functions return the update extent for output ports that use 3D extents. More...

void	GetUpdateExtent (int extent[6])
	These functions return the update extent for output ports that use 3D extents. More...

void	GetUpdateExtent (int port, int extent[6])
	These functions return the update extent for output ports that use 3D extents. More...

int	GetUpdatePiece ()
	These functions return the update extent for output ports that use piece extents. More...

int	GetUpdatePiece (int port)
	These functions return the update extent for output ports that use piece extents. More...

int	GetUpdateNumberOfPieces ()
	These functions return the update extent for output ports that use piece extents. More...

int	GetUpdateNumberOfPieces (int port)
	These functions return the update extent for output ports that use piece extents. More...

int	GetUpdateGhostLevel ()
	These functions return the update extent for output ports that use piece extents. More...

int	GetUpdateGhostLevel (int port)
	These functions return the update extent for output ports that use piece extents. More...

void	SetProgressObserver (vtkProgressObserver *)
	If an ProgressObserver is set, the algorithm will report progress through it rather than directly. More...

virtual vtkProgressObserver *	GetProgressObserver ()
	If an ProgressObserver is set, the algorithm will report progress through it rather than directly. More...

Public Member Functions inherited from vtkObject
	vtkBaseTypeMacro (vtkObject, vtkObjectBase)

virtual void	DebugOn ()
	Turn debugging output on. More...

virtual void	DebugOff ()
	Turn debugging output off. More...

bool	GetDebug ()
	Get the value of the debug flag. More...

void	SetDebug (bool debugFlag)
	Set the value of the debug flag. More...

virtual void	Modified ()
	Update the modification time for this object. More...

virtual vtkMTimeType	GetMTime ()
	Return this object's modified time. More...

void	RemoveObserver (unsigned long tag)

void	RemoveObservers (unsigned long event)

void	RemoveObservers (const char *event)

void	RemoveAllObservers ()

int	HasObserver (unsigned long event)

int	HasObserver (const char *event)

int	InvokeEvent (unsigned long event)

int	InvokeEvent (const char *event)

unsigned long	AddObserver (unsigned long event, vtkCommand *, float priority=0.0f)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

unsigned long	AddObserver (const char event, vtkCommand , float priority=0.0f)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

vtkCommand *	GetCommand (unsigned long tag)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

void	RemoveObserver (vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

void	RemoveObservers (unsigned long event, vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

void	RemoveObservers (const char event, vtkCommand )
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

int	HasObserver (unsigned long event, vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

int	HasObserver (const char event, vtkCommand )
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f)
	Overloads to AddObserver that allow developers to add class member functions as callbacks for events. More...

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)
	Overloads to AddObserver that allow developers to add class member functions as callbacks for events. More...

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, bool(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)
	Allow user to set the AbortFlagOn() with the return value of the callback method. More...

int	InvokeEvent (unsigned long event, void *callData)
	This method invokes an event and return whether the event was aborted or not. More...

int	InvokeEvent (const char event, void callData)
	This method invokes an event and return whether the event was aborted or not. More...

Public Member Functions inherited from vtkObjectBase
const char *	GetClassName () const
	Return the class name as a string. More...

virtual void	Delete ()
	Delete a VTK object. More...

virtual void	FastDelete ()
	Delete a reference to this object. More...

void	InitializeObjectBase ()

void	Print (ostream &os)
	Print an object to an ostream. More...

int	GetReferenceCount ()
	Return the current reference count of this object. More...

void	SetReferenceCount (int)
	Sets the reference count. More...

void	PrintRevisions (ostream &)
	Legacy. More...

virtual void	PrintHeader (ostream &os, vtkIndent indent)
	Methods invoked by print to print information about the object including superclasses. More...

virtual void	PrintTrailer (ostream &os, vtkIndent indent)
	Methods invoked by print to print information about the object including superclasses. More...

Static Public Member Functions
static int	IsTypeOf (const char *type)

static vtkMetaImageReader *	SafeDownCast (vtkObjectBase *o)

static vtkMetaImageReader *	New ()
	Construct object with FlipNormals turned off and Normals set to true. More...

Static Public Member Functions inherited from vtkImageReader2
static vtkImageReader2 *	New ()

static int	IsTypeOf (const char *type)

static vtkImageReader2 *	SafeDownCast (vtkObjectBase *o)

Static Public Member Functions inherited from vtkImageAlgorithm
static int	IsTypeOf (const char *type)

static vtkImageAlgorithm *	SafeDownCast (vtkObjectBase *o)

Static Public Member Functions inherited from vtkAlgorithm
static vtkAlgorithm *	New ()

static int	IsTypeOf (const char *type)

static vtkAlgorithm *	SafeDownCast (vtkObjectBase *o)

static vtkInformationIntegerKey *	INPUT_IS_OPTIONAL ()
	Keys used to specify input port requirements. More...

static vtkInformationIntegerKey *	INPUT_IS_REPEATABLE ()

static vtkInformationInformationVectorKey *	INPUT_REQUIRED_FIELDS ()

static vtkInformationStringVectorKey *	INPUT_REQUIRED_DATA_TYPE ()

static vtkInformationInformationVectorKey *	INPUT_ARRAYS_TO_PROCESS ()

static vtkInformationIntegerKey *	INPUT_PORT ()

static vtkInformationIntegerKey *	INPUT_CONNECTION ()

static vtkInformationIntegerKey *	CAN_PRODUCE_SUB_EXTENT ()
	This key tells the executive that a particular output port is capable of producing an arbitrary subextent of the whole extent. More...

static vtkInformationIntegerKey *	CAN_HANDLE_PIECE_REQUEST ()
	Key that tells the pipeline that a particular algorithm can or cannot handle piece request. More...

static void	SetDefaultExecutivePrototype (vtkExecutive *proto)
	If the DefaultExecutivePrototype is set, a copy of it is created in CreateDefaultExecutive() using NewInstance(). More...

Static Public Member Functions inherited from vtkObject
static vtkObject *	New ()
	Create an object with Debug turned off, modified time initialized to zero, and reference counting on. More...

static void	BreakOnError ()
	This method is called when vtkErrorMacro executes. More...

static void	SetGlobalWarningDisplay (int val)
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

static void	GlobalWarningDisplayOn ()
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

static void	GlobalWarningDisplayOff ()
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

static int	GetGlobalWarningDisplay ()
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

Static Public Member Functions inherited from vtkObjectBase
static vtkTypeBool	IsTypeOf (const char *name)
	Return 1 if this class type is the same type of (or a subclass of) the named class. More...

static vtkObjectBase *	New ()
	Create an object with Debug turned off, modified time initialized to zero, and reference counting on. More...

Protected Member Functions
virtual vtkObjectBase *	NewInstanceInternal () const

	vtkMetaImageReader ()

	~vtkMetaImageReader ()

void	ExecuteInformation ()

void	ExecuteDataWithInformation (vtkDataObject out, vtkInformation outInfo)
	This is a convenience method that is implemented in many subclasses instead of RequestData. More...

virtual int	RequestInformation (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector)
	Subclasses can reimplement this method to collect information from their inputs and set information for their outputs. More...

Protected Member Functions inherited from vtkImageReader2
virtual void	ComputeDataIncrements ()

	vtkImageReader2 ()
	Return a descriptive name for the file format that might be useful in a GUI. More...

	~vtkImageReader2 ()
	Return a descriptive name for the file format that might be useful in a GUI. More...

Protected Member Functions inherited from vtkImageAlgorithm
	vtkImageAlgorithm ()

	~vtkImageAlgorithm () override

virtual int	RequestUpdateExtent (vtkInformation , vtkInformationVector , vtkInformationVector )
	Subclasses can reimplement this method to translate the update extent requests from each output port into update extent requests for the input connections. More...

virtual void	CopyInputArrayAttributesToOutput (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector)
	Convenience method to copy the scalar type and number of components from the input data to the output data. More...

virtual int	RequestData (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector)
	This is called in response to a REQUEST_DATA request from the executive. More...

virtual void	CopyAttributeData (vtkImageData in, vtkImageData out, vtkInformationVector **inputVector)
	Copy the other point and cell data. More...

virtual void	ExecuteData (vtkDataObject *output)
	This method is the old style execute method, provided for the sake of backwards compatibility with older filters and readers. More...

virtual void	Execute ()
	This method is the old style execute method, provided for the sake of backwards compatibility with older filters and readers. More...

virtual void	AllocateOutputData (vtkImageData out, vtkInformation outInfo, int *uExtent)
	Allocate the output data. More...

virtual vtkImageData *	AllocateOutputData (vtkDataObject out, vtkInformation outInfo)
	Allocate the output data. More...

int	FillOutputPortInformation (int port, vtkInformation *info) override
	These method should be reimplemented by subclasses that have more than a single input or single output. More...

int	FillInputPortInformation (int port, vtkInformation *info) override
	These method should be reimplemented by subclasses that have more than a single input or single output. More...

Protected Member Functions inherited from vtkAlgorithm
	vtkAlgorithm ()

	~vtkAlgorithm () override

virtual void	SetNumberOfInputPorts (int n)
	Set the number of input ports used by the algorithm. More...

virtual void	SetNumberOfOutputPorts (int n)
	Set the number of output ports provided by the algorithm. More...

int	InputPortIndexInRange (int index, const char *action)

int	OutputPortIndexInRange (int index, const char *action)

int	GetInputArrayAssociation (int idx, vtkInformationVector **inputVector)
	Get the assocition of the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More...

vtkInformation *	GetInputArrayFieldInformation (int idx, vtkInformationVector **inputVector)
	This method takes in an index (as specified in SetInputArrayToProcess) and a pipeline information vector. More...

virtual vtkExecutive *	CreateDefaultExecutive ()
	Create a default executive. More...

void	ReportReferences (vtkGarbageCollector *) override

virtual void	SetNthInputConnection (int port, int index, vtkAlgorithmOutput *input)
	Replace the Nth connection on the given input port. More...

virtual void	SetNumberOfInputConnections (int port, int n)
	Set the number of input connections on the given input port. More...

void	SetInputDataInternal (int port, vtkDataObject *input)
	These methods are used by subclasses to implement methods to set data objects directly as input. More...

void	AddInputDataInternal (int port, vtkDataObject *input)

int	GetInputArrayAssociation (int idx, int connection, vtkInformationVector **inputVector)
	Filters that have multiple connections on one port can use this signature. More...

int	GetInputArrayAssociation (int idx, vtkDataObject *input)
	Filters that have multiple connections on one port can use this signature. More...

vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector)
	Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More...

vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
	Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More...

vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
	Filters that have multiple connections on one port can use this signature. More...

vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
	Filters that have multiple connections on one port can use this signature. More...

vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input)
	Filters that have multiple connections on one port can use this signature. More...

vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input, int &association)
	Filters that have multiple connections on one port can use this signature. More...

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector)
	Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More...

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
	Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More...

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
	Filters that have multiple connections on one port can use this signature. More...

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
	Filters that have multiple connections on one port can use this signature. More...

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input)
	Filters that have multiple connections on one port can use this signature. More...

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input, int &association)
	Filters that have multiple connections on one port can use this signature. More...

virtual void	SetErrorCode (unsigned long)
	The error code contains a possible error that occurred while reading or writing the file. More...

Protected Member Functions inherited from vtkObject
	vtkObject ()

	~vtkObject () override

void	RegisterInternal (vtkObjectBase *, vtkTypeBool check) override

void	UnRegisterInternal (vtkObjectBase *, vtkTypeBool check) override

void	InternalGrabFocus (vtkCommand mouseEvents, vtkCommand keypressEvents=NULL)
	These methods allow a command to exclusively grab all events. More...

void	InternalReleaseFocus ()
	These methods allow a command to exclusively grab all events. More...

Protected Member Functions inherited from vtkObjectBase
	vtkObjectBase ()

virtual	~vtkObjectBase ()

virtual void	CollectRevisions (ostream &)

	vtkObjectBase (const vtkObjectBase &)

void	operator= (const vtkObjectBase &)

Additional Inherited Members
Public Attributes inherited from vtkAlgorithm
int	AbortExecute

Static Protected Member Functions inherited from vtkAlgorithm
static vtkInformationIntegerKey *	PORT_REQUIREMENTS_FILLED ()

Protected Attributes inherited from vtkImageReader2
vtkStringArray *	FileNames

char *	InternalFileName

char *	FileName

char *	FilePrefix

char *	FilePattern

int	NumberOfScalarComponents

int	FileLowerLeft

void *	MemoryBuffer

vtkIdType	MemoryBufferLength

ifstream *	File

unsigned long	DataIncrements [4]

int	DataExtent [6]

int	SwapBytes

int	FileDimensionality

unsigned long	HeaderSize

int	DataScalarType

unsigned long	ManualHeaderSize

double	DataSpacing [3]

double	DataOrigin [3]

int	FileNameSliceOffset

int	FileNameSliceSpacing

Protected Attributes inherited from vtkAlgorithm
vtkInformation *	Information

double	Progress

char *	ProgressText

vtkProgressObserver *	ProgressObserver

unsigned long	ErrorCode
	The error code contains a possible error that occurred while reading or writing the file. More...

Protected Attributes inherited from vtkObject
bool	Debug

vtkTimeStamp	MTime

vtkSubjectHelper *	SubjectHelper

Protected Attributes inherited from vtkObjectBase
vtkAtomicInt32	ReferenceCount

vtkWeakPointerBase **	WeakPointers

Static Protected Attributes inherited from vtkAlgorithm
static vtkExecutive *	DefaultExecutivePrototype

Detailed Description

read binary UNC meta image data

One of the formats for which a reader is already available in the toolkit is the MetaImage file format. This is a fairly simple yet powerful format consisting of a text header and a binary data section. The following instructions describe how you can write a MetaImage header for the data that you download from the BrainWeb page.

The minimal structure of the MetaImage header is the following:

NDims = 3 DimSize = 181 217 181 ElementType = MET_UCHAR ElementSpacing = 1.0 1.0 1.0 ElementByteOrderMSB = False ElementDataFile = brainweb1.raw

NDims indicate that this is a 3D image. ITK can handle images of arbitrary dimension.
DimSize indicates the size of the volume in pixels along each direction.
ElementType indicate the primitive type used for pixels. In this case is "unsigned char", implying that the data is digitized in 8 bits / pixel.
ElementSpacing indicates the physical separation between the center of one pixel and the center of the next pixel along each direction in space. The units used are millimeters.
ElementByteOrderMSB indicates is the data is encoded in little or big endian order. You might want to play with this value when moving data between different computer platforms.
ElementDataFile is the name of the file containing the raw binary data of the image. This file must be in the same directory as the header.

MetaImage headers are expected to have extension: ".mha" or ".mhd"

Once you write this header text file, it should be possible to read the image into your ITK based application using the itk::FileIOToImageFilter class.

Examples:: vtkMetaImageReader (Examples)

Tests:: vtkMetaImageReader (Tests)

Definition at line 74 of file vtkMetaImageReader.h.

Member Typedef Documentation

typedef vtkImageReader2 vtkMetaImageReader::Superclass

Definition at line 77 of file vtkMetaImageReader.h.

Constructor & Destructor Documentation

vtkMetaImageReader::vtkMetaImageReader ( )

protected

vtkMetaImageReader::~vtkMetaImageReader ( )

protected

Member Function Documentation

static int vtkMetaImageReader::IsTypeOf ( const char * type )

static

virtual int vtkMetaImageReader::IsA ( const char * name )

virtual

Return 1 if this class is the same type of (or a subclass of) the named class.

Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkImageReader2.

static vtkMetaImageReader* vtkMetaImageReader::SafeDownCast ( vtkObjectBase * o )

static

virtual vtkObjectBase* vtkMetaImageReader::NewInstanceInternal ( ) const

protectedvirtual

Reimplemented from vtkImageReader2.

vtkMetaImageReader* vtkMetaImageReader::NewInstance ( ) const

void vtkMetaImageReader::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

virtual

Methods invoked by print to print information about the object including superclasses.

Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkImageReader2.

static vtkMetaImageReader* vtkMetaImageReader::New ( )

static

Construct object with FlipNormals turned off and Normals set to true.

virtual const char* vtkMetaImageReader::GetFileExtensions ( )

inlinevirtual

Get the file extensions for this format.

Returns a string with a space separated list of extensions in the format .extension

Reimplemented from vtkImageReader2.

Definition at line 85 of file vtkMetaImageReader.h.

virtual const char* vtkMetaImageReader::GetDescriptiveName ( )

inlinevirtual

Return a descriptive name for the file format that might be useful in a GUI.

Reimplemented from vtkImageReader2.

Definition at line 88 of file vtkMetaImageReader.h.

double* vtkMetaImageReader::GetPixelSpacing ( )

inline

Definition at line 92 of file vtkMetaImageReader.h.

int vtkMetaImageReader::GetWidth ( )

inline

Definition at line 94 of file vtkMetaImageReader.h.

int vtkMetaImageReader::GetHeight ( )

inline

Definition at line 96 of file vtkMetaImageReader.h.

double* vtkMetaImageReader::GetImagePositionPatient ( )

inline

Definition at line 98 of file vtkMetaImageReader.h.

int vtkMetaImageReader::GetNumberOfComponents ( )

inline

Definition at line 100 of file vtkMetaImageReader.h.

int vtkMetaImageReader::GetPixelRepresentation ( )

inline

Definition at line 102 of file vtkMetaImageReader.h.

int vtkMetaImageReader::GetDataByteOrder ( void )

virtual

These methods should be used instead of the SwapBytes methods.

They indicate the byte ordering of the file you are trying to read in. These methods will then either swap or not swap the bytes depending on the byte ordering of the machine it is being run on. For example, reading in a BigEndian file on a BigEndian machine will result in no swapping. Trying to read the same file on a LittleEndian machine will result in swapping. As a quick note most UNIX machines are BigEndian while PC's and VAX tend to be LittleEndian. So if the file you are reading in was generated on a VAX or PC, SetDataByteOrderToLittleEndian otherwise SetDataByteOrderToBigEndian.

Reimplemented from vtkImageReader2.

virtual double vtkMetaImageReader::GetRescaleSlope ( )

virtual

virtual double vtkMetaImageReader::GetRescaleOffset ( )

virtual

virtual int vtkMetaImageReader::GetBitsAllocated ( )

virtual

virtual char* vtkMetaImageReader::GetDistanceUnits ( )

virtual

virtual char* vtkMetaImageReader::GetAnatomicalOrientation ( )

virtual

virtual double vtkMetaImageReader::GetGantryAngle ( )

virtual

virtual char* vtkMetaImageReader::GetPatientName ( )

virtual

virtual char* vtkMetaImageReader::GetPatientID ( )

virtual

virtual char* vtkMetaImageReader::GetDate ( )

virtual

virtual char* vtkMetaImageReader::GetSeries ( )

virtual

virtual char* vtkMetaImageReader::GetImageNumber ( )

virtual

virtual char* vtkMetaImageReader::GetModality ( )

virtual

virtual char* vtkMetaImageReader::GetStudyID ( )

virtual

virtual char* vtkMetaImageReader::GetStudyUID ( )

virtual

virtual char* vtkMetaImageReader::GetTransferSyntaxUID ( )

virtual

virtual int vtkMetaImageReader::CanReadFile ( const char * name )

virtual

Test whether the file with the given name can be read by this reader.

void vtkMetaImageReader::ExecuteInformation ( )

protectedvirtual

Reimplemented from vtkImageReader2.

void vtkMetaImageReader::ExecuteDataWithInformation	(	vtkDataObject *	output,
		vtkInformation *	outInfo
	)

protectedvirtual

This is a convenience method that is implemented in many subclasses instead of RequestData.

It is called by RequestData.

Reimplemented from vtkImageReader2.

virtual int vtkMetaImageReader::RequestInformation	(	vtkInformation *	request,
		vtkInformationVector **	inputVector,
		vtkInformationVector *	outputVector
	)

protectedvirtual

Subclasses can reimplement this method to collect information from their inputs and set information for their outputs.

Reimplemented from vtkImageReader2.

The documentation for this class was generated from the following file:

/home/demarle/Builds/VTK/release/Utilities/Doxygen/dox/IO/Image/vtkMetaImageReader.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation