Read nrrd files efficiently from parallel file systems (and reasonably well elsewhere). More...

#include <vtkPNrrdReader.h>

Inheritance diagram for vtkPNrrdReader:

Collaboration diagram for vtkPNrrdReader:

Public Types
typedef vtkNrrdReader	Superclass

Public Types inherited from vtkNrrdReader
typedef vtkImageReader	Superclass

Public Types inherited from vtkImageReader
typedef vtkImageReader2	Superclass

Public Types inherited from vtkImageReader2
typedef vtkImageAlgorithm	Superclass

Public Types inherited from vtkImageAlgorithm
typedef vtkAlgorithm	Superclass

Public Types inherited from vtkAlgorithm
enum	DesiredOutputPrecision { SINGLE_PRECISION, DOUBLE_PRECISION, DEFAULT_PRECISION }
	Values used for setting the desired output precision for various algorithms. More...

typedef vtkObject	Superclass

Public Member Functions
virtual int	IsA (const char *type)
	Return 1 if this class is the same type of (or a subclass of) the named class. More...

vtkPNrrdReader *	NewInstance () const

virtual void	PrintSelf (ostream &os, vtkIndent indent)
	Methods invoked by print to print information about the object including superclasses. More...


virtual vtkMultiProcessController *	GetController ()
	Get/set the multi process controller to use for coordinated reads. More...

virtual void	SetController (vtkMultiProcessController *)
	Get/set the multi process controller to use for coordinated reads. More...

Public Member Functions inherited from vtkNrrdReader
vtkNrrdReader *	NewInstance () const

virtual int	CanReadFile (const char *filename)

Public Member Functions inherited from vtkImageReader
vtkImageReader *	NewInstance () const

void	ComputeInverseTransformedExtent (int inExtent[6], int outExtent[6])

void	ComputeInverseTransformedIncrements (vtkIdType inIncr[3], vtkIdType outIncr[3])

int	OpenAndSeekFile (int extent[6], int slice)

virtual void	SetDataVOI (int, int, int, int, int, int)
	Set/get the data VOI. More...

virtual void	SetDataVOI (int[6])
	Set/get the data VOI. More...

virtual int *	GetDataVOI ()
	Set/get the data VOI. More...

virtual void	GetDataVOI (int &, int &, int &, int &, int &, int &)
	Set/get the data VOI. More...

virtual void	GetDataVOI (int[6])
	Set/get the data VOI. More...

virtual vtkTypeUInt64	GetDataMask ()
	Set/Get the Data mask. More...

virtual void	SetDataMask (vtkTypeUInt64)
	Set/Get the Data mask. More...

virtual void	SetTransform (vtkTransform *)
	Set/Get transformation matrix to transform the data from slice space into world space. More...

virtual vtkTransform *	GetTransform ()
	Set/Get transformation matrix to transform the data from slice space into world space. More...

virtual void	SetScalarArrayName (const char *)
	Set/get the scalar array name for this data set. More...

virtual char *	GetScalarArrayName ()
	Set/get the scalar array name for this data set. More...

Public Member Functions inherited from vtkImageReader2
vtkImageReader2 *	NewInstance () const

virtual void	SetMemoryBuffer (void *)
	Specify the in memory image buffer. More...

virtual void *	GetMemoryBuffer ()

virtual void	SetMemoryBufferLength (vtkIdType buflen)
	Specify the in memory image buffer length. More...

vtkIdType	GetMemoryBufferLength ()

virtual void	SetDataScalarType (int type)
	Set the data type of pixels in the file. More...

virtual void	SetDataScalarTypeToFloat ()

virtual void	SetDataScalarTypeToDouble ()

virtual void	SetDataScalarTypeToInt ()

virtual void	SetDataScalarTypeToUnsignedInt ()

virtual void	SetDataScalarTypeToShort ()

virtual void	SetDataScalarTypeToUnsignedShort ()

virtual void	SetDataScalarTypeToChar ()

virtual void	SetDataScalarTypeToSignedChar ()

virtual void	SetDataScalarTypeToUnsignedChar ()

virtual void	SetHeaderSize (unsigned long size)
	If there is a tail on the file, you want to explicitly set the header size. More...

ifstream *	GetFile ()

virtual unsigned long *	GetDataIncrements ()

virtual void	GetDataIncrements (unsigned long data[4])

virtual int	OpenFile ()

virtual void	SeekFile (int i, int j, int k)

virtual int	CanReadFile (const char *vtkNotUsed(fname))
	Return non zero if the reader can read the given file name. More...

virtual const char *	GetFileExtensions ()
	Get the file extensions for this format. More...

virtual void	SetFileName (const char *)
	Specify file name for the image file. More...

virtual char *	GetFileName ()
	Specify file name for the image file. More...

virtual void	SetFileNames (vtkStringArray *)
	Specify a list of file names. More...

virtual vtkStringArray *	GetFileNames ()
	Specify a list of file names. More...

virtual void	SetFilePrefix (const char *)
	Specify file prefix for the image file or files. More...

virtual char *	GetFilePrefix ()
	Specify file prefix for the image file or files. More...

virtual void	SetFilePattern (const char *)
	The sprintf-style format string used to build filename from FilePrefix and slice number. More...

virtual char *	GetFilePattern ()
	The sprintf-style format string used to build filename from FilePrefix and slice number. More...

virtual int	GetDataScalarType ()
	Get the file format. More...

virtual void	SetNumberOfScalarComponents (int)
	Set/Get the number of scalar components. More...

virtual int	GetNumberOfScalarComponents ()
	Set/Get the number of scalar components. More...

virtual void	SetDataExtent (int, int, int, int, int, int)
	Get/Set the extent of the data on disk. More...

virtual void	SetDataExtent (int[6])
	Get/Set the extent of the data on disk. More...

virtual int *	GetDataExtent ()
	Get/Set the extent of the data on disk. More...

virtual void	GetDataExtent (int &, int &, int &, int &, int &, int &)
	Get/Set the extent of the data on disk. More...

virtual void	GetDataExtent (int[6])
	Get/Set the extent of the data on disk. More...

virtual void	SetFileDimensionality (int)
	The number of dimensions stored in a file. More...

int	GetFileDimensionality ()
	The number of dimensions stored in a file. More...

virtual void	SetDataSpacing (double, double, double)
	Set/Get the spacing of the data in the file. More...

virtual void	SetDataSpacing (double[3])
	Set/Get the spacing of the data in the file. More...

virtual double *	GetDataSpacing ()
	Set/Get the spacing of the data in the file. More...

virtual void	GetDataSpacing (double &, double &, double &)
	Set/Get the spacing of the data in the file. More...

virtual void	GetDataSpacing (double[3])
	Set/Get the spacing of the data in the file. More...

virtual void	SetDataOrigin (double, double, double)
	Set/Get the origin of the data (location of first pixel in the file). More...

virtual void	SetDataOrigin (double[3])
	Set/Get the origin of the data (location of first pixel in the file). More...

virtual double *	GetDataOrigin ()
	Set/Get the origin of the data (location of first pixel in the file). More...

virtual void	GetDataOrigin (double &, double &, double &)
	Set/Get the origin of the data (location of first pixel in the file). More...

virtual void	GetDataOrigin (double[3])
	Set/Get the origin of the data (location of first pixel in the file). More...

unsigned long	GetHeaderSize ()
	Get the size of the header computed by this object. More...

unsigned long	GetHeaderSize (unsigned long slice)
	Get the size of the header computed by this object. More...

virtual void	SetDataByteOrderToBigEndian ()
	These methods should be used instead of the SwapBytes methods. More...

virtual void	SetDataByteOrderToLittleEndian ()
	These methods should be used instead of the SwapBytes methods. More...

virtual int	GetDataByteOrder ()
	These methods should be used instead of the SwapBytes methods. More...

virtual void	SetDataByteOrder (int)
	These methods should be used instead of the SwapBytes methods. More...

virtual const char *	GetDataByteOrderAsString ()
	These methods should be used instead of the SwapBytes methods. More...

virtual void	SetFileNameSliceOffset (int)
	When reading files which start at an unusual index, this can be added to the slice number when generating the file name (default = 0) More...

virtual int	GetFileNameSliceOffset ()
	When reading files which start at an unusual index, this can be added to the slice number when generating the file name (default = 0) More...

virtual void	SetFileNameSliceSpacing (int)
	When reading files which have regular, but non contiguous slices (eg filename.1,filename.3,filename.5) a spacing can be specified to skip missing files (default = 1) More...

virtual int	GetFileNameSliceSpacing ()
	When reading files which have regular, but non contiguous slices (eg filename.1,filename.3,filename.5) a spacing can be specified to skip missing files (default = 1) More...

virtual void	SetSwapBytes (int)
	Set/Get the byte swapping to explicitly swap the bytes of a file. More...

virtual int	GetSwapBytes ()
	Set/Get the byte swapping to explicitly swap the bytes of a file. More...

virtual void	SwapBytesOn ()
	Set/Get the byte swapping to explicitly swap the bytes of a file. More...

virtual void	SwapBytesOff ()
	Set/Get the byte swapping to explicitly swap the bytes of a file. More...

virtual void	FileLowerLeftOn ()
	Set/Get whether the data comes from the file starting in the lower left corner or upper left corner. More...

virtual void	FileLowerLeftOff ()
	Set/Get whether the data comes from the file starting in the lower left corner or upper left corner. More...

virtual int	GetFileLowerLeft ()
	Set/Get whether the data comes from the file starting in the lower left corner or upper left corner. More...

virtual void	SetFileLowerLeft (int)
	Set/Get whether the data comes from the file starting in the lower left corner or upper left corner. More...

virtual void	ComputeInternalFileName (int slice)
	Set/Get the internal file name. More...

virtual char *	GetInternalFileName ()
	Set/Get the internal file name. More...

virtual const char *	GetDescriptiveName ()
	Return a descriptive name for the file format that might be useful in a GUI. More...

Public Member Functions inherited from vtkImageAlgorithm
vtkImageAlgorithm *	NewInstance () const

int	ProcessRequest (vtkInformation , vtkInformationVector , vtkInformationVector ) override
	Process a request from the executive. More...

vtkImageData *	GetOutput ()
	Get the output data object for a port on this algorithm. More...

vtkImageData *	GetOutput (int)
	Get the output data object for a port on this algorithm. More...

virtual void	SetOutput (vtkDataObject *d)
	Get the output data object for a port on this algorithm. More...

void	SetInputData (vtkDataObject *)
	Assign a data object as input. More...

void	SetInputData (int, vtkDataObject *)
	Assign a data object as input. More...

vtkDataObject *	GetInput (int port)
	Get a data object for one of the input port connections. More...

vtkDataObject *	GetInput ()
	Get a data object for one of the input port connections. More...

vtkImageData *	GetImageDataInput (int port)
	Get a data object for one of the input port connections. More...

virtual void	AddInputData (vtkDataObject *)
	Assign a data object as input. More...

virtual void	AddInputData (int, vtkDataObject *)
	Assign a data object as input. More...

Public Member Functions inherited from vtkAlgorithm
vtkAlgorithm *	NewInstance () const

int	HasExecutive ()
	Check whether this algorithm has an assigned executive. More...

vtkExecutive *	GetExecutive ()
	Get this algorithm's executive. More...

virtual void	SetExecutive (vtkExecutive *executive)
	Set this algorithm's executive. More...

int	ProcessRequest (vtkInformation request, vtkCollection inInfo, vtkInformationVector *outInfo)
	Version of ProcessRequest() that is wrapped. More...

virtual int	ComputePipelineMTime (vtkInformation request, vtkInformationVector inInfoVec, vtkInformationVector outInfoVec, int requestFromOutputPort, vtkMTimeType *mtime)
	A special version of ProcessRequest meant specifically for the pipeline modified time request. More...

virtual int	ModifyRequest (vtkInformation *request, int when)
	This method gives the algorithm a chance to modify the contents of a request before or after (specified in the when argument) it is forwarded. More...

vtkInformation *	GetInputPortInformation (int port)
	Get the information object associated with an input port. More...

vtkInformation *	GetOutputPortInformation (int port)
	Get the information object associated with an output port. More...

int	GetNumberOfInputPorts ()
	Get the number of input ports used by the algorithm. More...

int	GetNumberOfOutputPorts ()
	Get the number of output ports provided by the algorithm. More...

void	UpdateProgress (double amount)
	Update the progress of the process object. More...

virtual void	SetInputArrayToProcess (int idx, int port, int connection, const char fieldAssociation, const char attributeTypeorName)
	String based versions of SetInputArrayToProcess(). More...

vtkInformation *	GetInputArrayInformation (int idx)
	Get the info object for the specified input array to this algorithm. More...

void	RemoveAllInputs ()
	Remove all the input data. More...

vtkDataObject *	GetOutputDataObject (int port)
	Get the data object that will contain the algorithm output for the given port. More...

vtkDataObject *	GetInputDataObject (int port, int connection)
	Get the data object that will contain the algorithm input for the given port and given connection. More...

virtual void	RemoveInputConnection (int port, vtkAlgorithmOutput *input)
	Remove a connection from the given input port index. More...

virtual void	RemoveInputConnection (int port, int idx)
	Remove a connection given by index idx. More...

virtual void	RemoveAllInputConnections (int port)
	Removes all input connections. More...

virtual void	SetInputDataObject (int port, vtkDataObject *data)
	Sets the data-object as an input on the given port index. More...

virtual void	SetInputDataObject (vtkDataObject *data)

virtual void	AddInputDataObject (int port, vtkDataObject *data)
	Add the data-object as an input to this given port. More...

virtual void	AddInputDataObject (vtkDataObject *data)

vtkAlgorithmOutput *	GetOutputPort (int index)
	Get a proxy object corresponding to the given output port of this algorithm. More...

vtkAlgorithmOutput *	GetOutputPort ()

int	GetNumberOfInputConnections (int port)
	Get the number of inputs currently connected to a port. More...

int	GetTotalNumberOfInputConnections ()
	Get the total number of inputs for this algorithm. More...

vtkAlgorithmOutput *	GetInputConnection (int port, int index)
	Get the algorithm output port connected to an input port. More...

vtkAlgorithm *	GetInputAlgorithm (int port, int index, int &algPort)
	Returns the algorithm and the output port index of that algorithm connected to a port-index pair. More...

vtkAlgorithm *	GetInputAlgorithm (int port, int index)
	Returns the algorithm connected to a port-index pair. More...

vtkAlgorithm *	GetInputAlgorithm ()
	Equivalent to GetInputAlgorithm(0, 0). More...

vtkExecutive *	GetInputExecutive (int port, int index)
	Returns the executive associated with a particular input connection. More...

vtkExecutive *	GetInputExecutive ()
	Equivalent to GetInputExecutive(0, 0) More...

vtkInformation *	GetInputInformation (int port, int index)
	Return the information object that is associated with a particular input connection. More...

vtkInformation *	GetInputInformation ()
	Equivalent to GetInputInformation(0, 0) More...

vtkInformation *	GetOutputInformation (int port)
	Return the information object that is associated with a particular output port. More...

virtual int	Update (int port, vtkInformationVector *requests)
	This method enables the passing of data requests to the algorithm to be used during execution (in addition to bringing a particular port up-to-date). More...

virtual int	Update (vtkInformation *requests)
	Convenience method to update an algorithm after passing requests to its first output port. More...

virtual int	UpdatePiece (int piece, int numPieces, int ghostLevels, const int extents[6]=0)
	Convenience method to update an algorithm after passing requests to its first output port. More...

virtual int	UpdateExtent (const int extents[6])
	Convenience method to update an algorithm after passing requests to its first output port. More...

virtual int	UpdateTimeStep (double time, int piece=-1, int numPieces=1, int ghostLevels=0, const int extents[6]=0)
	Convenience method to update an algorithm after passing requests to its first output port. More...

virtual void	UpdateInformation ()
	Bring the algorithm's information up-to-date. More...

virtual void	UpdateDataObject ()
	Create output object(s). More...

virtual void	PropagateUpdateExtent ()
	Propagate meta-data upstream. More...

virtual void	UpdateWholeExtent ()
	Bring this algorithm's outputs up-to-date. More...

void	ConvertTotalInputToPortConnection (int ind, int &port, int &conn)
	Convenience routine to convert from a linear ordering of input connections to a port/connection pair. More...

int	SetUpdateExtentToWholeExtent (int port)
	If the whole output extent is required, this method can be called to set the output update extent to the whole extent. More...

int	SetUpdateExtentToWholeExtent ()
	Convenience function equivalent to SetUpdateExtentToWholeExtent(0) This method assumes that the whole extent is known (that UpdateInformation has been called). More...

void	SetUpdateExtent (int port, int piece, int numPieces, int ghostLevel)
	Set the output update extent in terms of piece and ghost levels. More...

void	SetUpdateExtent (int piece, int numPieces, int ghostLevel)
	Convenience function equivalent to SetUpdateExtent(0, piece, numPieces, ghostLevel) More...

void	SetUpdateExtent (int port, int extent[6])
	Set the output update extent for data objects that use 3D extents. More...

void	SetUpdateExtent (int extent[6])
	Convenience function equivalent to SetUpdateExtent(0, extent) More...

virtual vtkInformation *	GetInformation ()
	Set/Get the information object associated with this algorithm. More...

virtual void	SetInformation (vtkInformation *)
	Set/Get the information object associated with this algorithm. More...

void	Register (vtkObjectBase *o) override
	Participate in garbage collection. More...

void	UnRegister (vtkObjectBase *o) override
	Participate in garbage collection. More...

virtual void	SetAbortExecute (int)
	Set/Get the AbortExecute flag for the process object. More...

virtual int	GetAbortExecute ()
	Set/Get the AbortExecute flag for the process object. More...

virtual void	AbortExecuteOn ()
	Set/Get the AbortExecute flag for the process object. More...

virtual void	AbortExecuteOff ()
	Set/Get the AbortExecute flag for the process object. More...

virtual void	SetProgress (double)
	Set/Get the execution progress of a process object. More...

virtual double	GetProgress ()
	Set/Get the execution progress of a process object. More...

void	SetProgressText (const char *ptext)
	Set the current text message associated with the progress state. More...

virtual char *	GetProgressText ()
	Set the current text message associated with the progress state. More...

virtual unsigned long	GetErrorCode ()
	The error code contains a possible error that occurred while reading or writing the file. More...

virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, const char *name)
	Set the input data arrays that this algorithm will process. More...

virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, int fieldAttributeType)
	Set the input data arrays that this algorithm will process. More...

virtual void	SetInputArrayToProcess (int idx, vtkInformation *info)
	Set the input data arrays that this algorithm will process. More...

virtual void	SetInputConnection (int port, vtkAlgorithmOutput *input)
	Set the connection for the given input port index. More...

virtual void	SetInputConnection (vtkAlgorithmOutput *input)
	Set the connection for the given input port index. More...

virtual void	AddInputConnection (int port, vtkAlgorithmOutput *input)
	Add a connection to the given input port index. More...

virtual void	AddInputConnection (vtkAlgorithmOutput *input)
	Add a connection to the given input port index. More...

virtual void	Update (int port)
	Bring this algorithm's outputs up-to-date. More...

virtual void	Update ()
	Bring this algorithm's outputs up-to-date. More...

virtual void	SetReleaseDataFlag (int)
	Turn release data flag on or off for all output ports. More...

virtual int	GetReleaseDataFlag ()
	Turn release data flag on or off for all output ports. More...

void	ReleaseDataFlagOn ()
	Turn release data flag on or off for all output ports. More...

void	ReleaseDataFlagOff ()
	Turn release data flag on or off for all output ports. More...

int	UpdateExtentIsEmpty (vtkInformation pinfo, vtkDataObject output)
	This detects when the UpdateExtent will generate no data This condition is satisfied when the UpdateExtent has zero volume (0,-1,...) or the UpdateNumberOfPieces is 0. More...

int	UpdateExtentIsEmpty (vtkInformation *pinfo, int extentType)
	This detects when the UpdateExtent will generate no data This condition is satisfied when the UpdateExtent has zero volume (0,-1,...) or the UpdateNumberOfPieces is 0. More...

int *	GetUpdateExtent ()
	These functions return the update extent for output ports that use 3D extents. More...

int *	GetUpdateExtent (int port)
	These functions return the update extent for output ports that use 3D extents. More...

void	GetUpdateExtent (int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)
	These functions return the update extent for output ports that use 3D extents. More...

void	GetUpdateExtent (int port, int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)
	These functions return the update extent for output ports that use 3D extents. More...

void	GetUpdateExtent (int extent[6])
	These functions return the update extent for output ports that use 3D extents. More...

void	GetUpdateExtent (int port, int extent[6])
	These functions return the update extent for output ports that use 3D extents. More...

int	GetUpdatePiece ()
	These functions return the update extent for output ports that use piece extents. More...

int	GetUpdatePiece (int port)
	These functions return the update extent for output ports that use piece extents. More...

int	GetUpdateNumberOfPieces ()
	These functions return the update extent for output ports that use piece extents. More...

int	GetUpdateNumberOfPieces (int port)
	These functions return the update extent for output ports that use piece extents. More...

int	GetUpdateGhostLevel ()
	These functions return the update extent for output ports that use piece extents. More...

int	GetUpdateGhostLevel (int port)
	These functions return the update extent for output ports that use piece extents. More...

void	SetProgressObserver (vtkProgressObserver *)
	If an ProgressObserver is set, the algorithm will report progress through it rather than directly. More...

virtual vtkProgressObserver *	GetProgressObserver ()
	If an ProgressObserver is set, the algorithm will report progress through it rather than directly. More...

Public Member Functions inherited from vtkObject
	vtkBaseTypeMacro (vtkObject, vtkObjectBase)

virtual void	DebugOn ()
	Turn debugging output on. More...

virtual void	DebugOff ()
	Turn debugging output off. More...

bool	GetDebug ()
	Get the value of the debug flag. More...

void	SetDebug (bool debugFlag)
	Set the value of the debug flag. More...

virtual void	Modified ()
	Update the modification time for this object. More...

virtual vtkMTimeType	GetMTime ()
	Return this object's modified time. More...

void	RemoveObserver (unsigned long tag)

void	RemoveObservers (unsigned long event)

void	RemoveObservers (const char *event)

void	RemoveAllObservers ()

int	HasObserver (unsigned long event)

int	HasObserver (const char *event)

int	InvokeEvent (unsigned long event)

int	InvokeEvent (const char *event)

unsigned long	AddObserver (unsigned long event, vtkCommand *, float priority=0.0f)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

unsigned long	AddObserver (const char event, vtkCommand , float priority=0.0f)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

vtkCommand *	GetCommand (unsigned long tag)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

void	RemoveObserver (vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

void	RemoveObservers (unsigned long event, vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

void	RemoveObservers (const char event, vtkCommand )
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

int	HasObserver (unsigned long event, vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

int	HasObserver (const char event, vtkCommand )
	Allow people to add/remove/invoke observers (callbacks) to any VTK object. More...

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f)
	Overloads to AddObserver that allow developers to add class member functions as callbacks for events. More...

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)
	Overloads to AddObserver that allow developers to add class member functions as callbacks for events. More...

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, bool(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)
	Allow user to set the AbortFlagOn() with the return value of the callback method. More...

int	InvokeEvent (unsigned long event, void *callData)
	This method invokes an event and return whether the event was aborted or not. More...

int	InvokeEvent (const char event, void callData)
	This method invokes an event and return whether the event was aborted or not. More...

Public Member Functions inherited from vtkObjectBase
const char *	GetClassName () const
	Return the class name as a string. More...

virtual void	Delete ()
	Delete a VTK object. More...

virtual void	FastDelete ()
	Delete a reference to this object. More...

void	InitializeObjectBase ()

void	Print (ostream &os)
	Print an object to an ostream. More...

int	GetReferenceCount ()
	Return the current reference count of this object. More...

void	SetReferenceCount (int)
	Sets the reference count. More...

void	PrintRevisions (ostream &)
	Legacy. More...

virtual void	PrintHeader (ostream &os, vtkIndent indent)
	Methods invoked by print to print information about the object including superclasses. More...

virtual void	PrintTrailer (ostream &os, vtkIndent indent)
	Methods invoked by print to print information about the object including superclasses. More...

Static Public Member Functions
static int	IsTypeOf (const char *type)

static vtkPNrrdReader *	SafeDownCast (vtkObjectBase *o)

static vtkPNrrdReader *	New ()

Static Public Member Functions inherited from vtkNrrdReader
static int	IsTypeOf (const char *type)

static vtkNrrdReader *	SafeDownCast (vtkObjectBase *o)

static vtkNrrdReader *	New ()

Static Public Member Functions inherited from vtkImageReader
static vtkImageReader *	New ()

static int	IsTypeOf (const char *type)

static vtkImageReader *	SafeDownCast (vtkObjectBase *o)

Static Public Member Functions inherited from vtkImageReader2
static vtkImageReader2 *	New ()

static int	IsTypeOf (const char *type)

static vtkImageReader2 *	SafeDownCast (vtkObjectBase *o)

Static Public Member Functions inherited from vtkImageAlgorithm
static int	IsTypeOf (const char *type)

static vtkImageAlgorithm *	SafeDownCast (vtkObjectBase *o)

Static Public Member Functions inherited from vtkAlgorithm
static vtkAlgorithm *	New ()

static int	IsTypeOf (const char *type)

static vtkAlgorithm *	SafeDownCast (vtkObjectBase *o)

static vtkInformationIntegerKey *	INPUT_IS_OPTIONAL ()
	Keys used to specify input port requirements. More...

static vtkInformationIntegerKey *	INPUT_IS_REPEATABLE ()

static vtkInformationInformationVectorKey *	INPUT_REQUIRED_FIELDS ()

static vtkInformationStringVectorKey *	INPUT_REQUIRED_DATA_TYPE ()

static vtkInformationInformationVectorKey *	INPUT_ARRAYS_TO_PROCESS ()

static vtkInformationIntegerKey *	INPUT_PORT ()

static vtkInformationIntegerKey *	INPUT_CONNECTION ()

static vtkInformationIntegerKey *	CAN_PRODUCE_SUB_EXTENT ()
	This key tells the executive that a particular output port is capable of producing an arbitrary subextent of the whole extent. More...

static vtkInformationIntegerKey *	CAN_HANDLE_PIECE_REQUEST ()
	Key that tells the pipeline that a particular algorithm can or cannot handle piece request. More...

static void	SetDefaultExecutivePrototype (vtkExecutive *proto)
	If the DefaultExecutivePrototype is set, a copy of it is created in CreateDefaultExecutive() using NewInstance(). More...

Static Public Member Functions inherited from vtkObject
static vtkObject *	New ()
	Create an object with Debug turned off, modified time initialized to zero, and reference counting on. More...

static void	BreakOnError ()
	This method is called when vtkErrorMacro executes. More...

static void	SetGlobalWarningDisplay (int val)
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

static void	GlobalWarningDisplayOn ()
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

static void	GlobalWarningDisplayOff ()
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

static int	GetGlobalWarningDisplay ()
	This is a global flag that controls whether any debug, warning or error messages are displayed. More...

Static Public Member Functions inherited from vtkObjectBase
static vtkTypeBool	IsTypeOf (const char *name)
	Return 1 if this class type is the same type of (or a subclass of) the named class. More...

static vtkObjectBase *	New ()
	Create an object with Debug turned off, modified time initialized to zero, and reference counting on. More...

Protected Member Functions
virtual vtkObjectBase *	NewInstanceInternal () const

	vtkPNrrdReader ()

	~vtkPNrrdReader ()

virtual int	ReadHeader ()

virtual int	ReadHeader (vtkCharArray *headerBuffer)

int	GetDataScalarTypeSize ()
	Returns the size, in bytes of the scalar data type (GetDataScalarType). More...

virtual void	PartitionController (const int extent[6])
	Break up the controller based on the files each process reads. More...

virtual unsigned long	GetHeaderSize (vtkMPIOpaqueFileHandle &file)
	Get the header size of the given open file. More...

virtual void	SetupFileView (vtkMPIOpaqueFileHandle &file, const int extent[6])
	Set up a "view" on the open file that will allow you to read the 2D or 3D subarray from the file in one read. More...

virtual void	ReadSlice (int slice, const int extent[6], void *buffer)
	Given a slice of the data, open the appropriate file, read the data into given buffer, and close the file. More...

virtual void	TransformData (vtkImageData *data)
	Transform the data from the order read from a file to the order to place in the output data (as defined by the transform). More...

virtual void	ExecuteDataWithInformation (vtkDataObject data, vtkInformation outInfo)
	This is a convenience method that is implemented in many subclasses instead of RequestData. More...

Protected Member Functions inherited from vtkNrrdReader
	vtkNrrdReader ()

	~vtkNrrdReader ()

virtual int	RequestInformation (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector)
	Subclasses can reimplement this method to collect information from their inputs and set information for their outputs. More...

virtual int	RequestData (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector)
	This is called in response to a REQUEST_DATA request from the executive. More...

int	ReadHeaderInternal (vtkCharArray *headerBuffer)

virtual int	ReadDataAscii (vtkImageData *output)

Protected Member Functions inherited from vtkImageReader
	vtkImageReader ()

	~vtkImageReader ()

void	ComputeTransformedSpacing (double Spacing[3])

void	ComputeTransformedOrigin (double origin[3])

void	ComputeTransformedExtent (int inExtent[6], int outExtent[6])

void	ComputeTransformedIncrements (vtkIdType inIncr[3], vtkIdType outIncr[3])

Protected Member Functions inherited from vtkImageReader2
virtual void	ExecuteInformation ()

virtual void	ComputeDataIncrements ()

	vtkImageReader2 ()
	Return a descriptive name for the file format that might be useful in a GUI. More...

	~vtkImageReader2 ()
	Return a descriptive name for the file format that might be useful in a GUI. More...

Protected Member Functions inherited from vtkImageAlgorithm
	vtkImageAlgorithm ()

	~vtkImageAlgorithm () override

virtual int	RequestUpdateExtent (vtkInformation , vtkInformationVector , vtkInformationVector )
	Subclasses can reimplement this method to translate the update extent requests from each output port into update extent requests for the input connections. More...

virtual void	CopyInputArrayAttributesToOutput (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector)
	Convenience method to copy the scalar type and number of components from the input data to the output data. More...

virtual void	CopyAttributeData (vtkImageData in, vtkImageData out, vtkInformationVector **inputVector)
	Copy the other point and cell data. More...

virtual void	ExecuteData (vtkDataObject *output)
	This method is the old style execute method, provided for the sake of backwards compatibility with older filters and readers. More...

virtual void	Execute ()
	This method is the old style execute method, provided for the sake of backwards compatibility with older filters and readers. More...

virtual void	AllocateOutputData (vtkImageData out, vtkInformation outInfo, int *uExtent)
	Allocate the output data. More...

virtual vtkImageData *	AllocateOutputData (vtkDataObject out, vtkInformation outInfo)
	Allocate the output data. More...

int	FillOutputPortInformation (int port, vtkInformation *info) override
	These method should be reimplemented by subclasses that have more than a single input or single output. More...

int	FillInputPortInformation (int port, vtkInformation *info) override
	These method should be reimplemented by subclasses that have more than a single input or single output. More...

Protected Member Functions inherited from vtkAlgorithm
	vtkAlgorithm ()

	~vtkAlgorithm () override

virtual void	SetNumberOfInputPorts (int n)
	Set the number of input ports used by the algorithm. More...

virtual void	SetNumberOfOutputPorts (int n)
	Set the number of output ports provided by the algorithm. More...

int	InputPortIndexInRange (int index, const char *action)

int	OutputPortIndexInRange (int index, const char *action)

int	GetInputArrayAssociation (int idx, vtkInformationVector **inputVector)
	Get the assocition of the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More...

vtkInformation *	GetInputArrayFieldInformation (int idx, vtkInformationVector **inputVector)
	This method takes in an index (as specified in SetInputArrayToProcess) and a pipeline information vector. More...

virtual vtkExecutive *	CreateDefaultExecutive ()
	Create a default executive. More...

void	ReportReferences (vtkGarbageCollector *) override

virtual void	SetNthInputConnection (int port, int index, vtkAlgorithmOutput *input)
	Replace the Nth connection on the given input port. More...

virtual void	SetNumberOfInputConnections (int port, int n)
	Set the number of input connections on the given input port. More...

void	SetInputDataInternal (int port, vtkDataObject *input)
	These methods are used by subclasses to implement methods to set data objects directly as input. More...

void	AddInputDataInternal (int port, vtkDataObject *input)

int	GetInputArrayAssociation (int idx, int connection, vtkInformationVector **inputVector)
	Filters that have multiple connections on one port can use this signature. More...

int	GetInputArrayAssociation (int idx, vtkDataObject *input)
	Filters that have multiple connections on one port can use this signature. More...

vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector)
	Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More...

vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
	Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More...

vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
	Filters that have multiple connections on one port can use this signature. More...

vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
	Filters that have multiple connections on one port can use this signature. More...

vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input)
	Filters that have multiple connections on one port can use this signature. More...

vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input, int &association)
	Filters that have multiple connections on one port can use this signature. More...

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector)
	Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More...

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
	Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. More...

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
	Filters that have multiple connections on one port can use this signature. More...

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
	Filters that have multiple connections on one port can use this signature. More...

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input)
	Filters that have multiple connections on one port can use this signature. More...

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input, int &association)
	Filters that have multiple connections on one port can use this signature. More...

virtual void	SetErrorCode (unsigned long)
	The error code contains a possible error that occurred while reading or writing the file. More...

Protected Member Functions inherited from vtkObject
	vtkObject ()

	~vtkObject () override

void	RegisterInternal (vtkObjectBase *, vtkTypeBool check) override

void	UnRegisterInternal (vtkObjectBase *, vtkTypeBool check) override

void	InternalGrabFocus (vtkCommand mouseEvents, vtkCommand keypressEvents=NULL)
	These methods allow a command to exclusively grab all events. More...

void	InternalReleaseFocus ()
	These methods allow a command to exclusively grab all events. More...

Protected Member Functions inherited from vtkObjectBase
	vtkObjectBase ()

virtual	~vtkObjectBase ()

virtual void	CollectRevisions (ostream &)

	vtkObjectBase (const vtkObjectBase &)

void	operator= (const vtkObjectBase &)

Protected Attributes
vtkMultiProcessController *	Controller

Protected Attributes inherited from vtkNrrdReader
vtkStringArray *	DataFiles

int	Encoding

Protected Attributes inherited from vtkImageReader
vtkTypeUInt64	DataMask

vtkTransform *	Transform

int	DataVOI [6]

char *	ScalarArrayName

Protected Attributes inherited from vtkImageReader2
vtkStringArray *	FileNames

char *	InternalFileName

char *	FileName

char *	FilePrefix

char *	FilePattern

int	NumberOfScalarComponents

int	FileLowerLeft

void *	MemoryBuffer

vtkIdType	MemoryBufferLength

ifstream *	File

unsigned long	DataIncrements [4]

int	DataExtent [6]

int	SwapBytes

int	FileDimensionality

unsigned long	HeaderSize

int	DataScalarType

unsigned long	ManualHeaderSize

double	DataSpacing [3]

double	DataOrigin [3]

int	FileNameSliceOffset

int	FileNameSliceSpacing

Protected Attributes inherited from vtkAlgorithm
vtkInformation *	Information

double	Progress

char *	ProgressText

vtkProgressObserver *	ProgressObserver

unsigned long	ErrorCode
	The error code contains a possible error that occurred while reading or writing the file. More...

Protected Attributes inherited from vtkObject
bool	Debug

vtkTimeStamp	MTime

vtkSubjectHelper *	SubjectHelper

Protected Attributes inherited from vtkObjectBase
vtkAtomicInt32	ReferenceCount

vtkWeakPointerBase **	WeakPointers

vtkMultiProcessController *	GroupedController
	A group of processes that are reading the same file (as determined by PartitionController. More...

void	SetGroupedController (vtkMultiProcessController *)
	A group of processes that are reading the same file (as determined by PartitionController. More...

Additional Inherited Members
Public Attributes inherited from vtkAlgorithm
int	AbortExecute

Protected Types inherited from vtkNrrdReader
enum	{ ENCODING_RAW, ENCODING_ASCII }

Static Protected Member Functions inherited from vtkAlgorithm
static vtkInformationIntegerKey *	PORT_REQUIREMENTS_FILLED ()

Static Protected Attributes inherited from vtkAlgorithm
static vtkExecutive *	DefaultExecutivePrototype

Detailed Description

Read nrrd files efficiently from parallel file systems (and reasonably well elsewhere).

vtkPNrrdReader is a subclass of vtkNrrdReader that will read Nrrd format header information of the image before reading the data. This means that the reader will automatically set information like file dimensions.

Bug:: There are several limitations on what type of nrrd files we can read. This reader only supports nrrd files in raw format. Other encodings like ascii and hex will result in errors. When reading in detached headers, this only supports reading one file that is detached.

Tests:: vtkPNrrdReader (Tests)

Definition at line 53 of file vtkPNrrdReader.h.

Member Typedef Documentation

typedef vtkNrrdReader vtkPNrrdReader::Superclass

Definition at line 56 of file vtkPNrrdReader.h.

Constructor & Destructor Documentation

vtkPNrrdReader::vtkPNrrdReader ( )

protected

vtkPNrrdReader::~vtkPNrrdReader ( )

protected

Member Function Documentation

static int vtkPNrrdReader::IsTypeOf ( const char * type )

static

virtual int vtkPNrrdReader::IsA ( const char * name )

virtual

Return 1 if this class is the same type of (or a subclass of) the named class.

Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkNrrdReader.

static vtkPNrrdReader* vtkPNrrdReader::SafeDownCast ( vtkObjectBase * o )

static

virtual vtkObjectBase* vtkPNrrdReader::NewInstanceInternal ( ) const

protectedvirtual

Reimplemented from vtkNrrdReader.

vtkPNrrdReader* vtkPNrrdReader::NewInstance ( ) const

static vtkPNrrdReader* vtkPNrrdReader::New ( )

static

virtual void vtkPNrrdReader::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

virtual

Methods invoked by print to print information about the object including superclasses.

Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkNrrdReader.

virtual vtkMultiProcessController* vtkPNrrdReader::GetController ( )

virtual

Get/set the multi process controller to use for coordinated reads.

By default, set to the global controller.

virtual void vtkPNrrdReader::SetController ( vtkMultiProcessController * )

virtual

Get/set the multi process controller to use for coordinated reads.

By default, set to the global controller.

virtual int vtkPNrrdReader::ReadHeader ( )

protectedvirtual

Reimplemented from vtkNrrdReader.

virtual int vtkPNrrdReader::ReadHeader ( vtkCharArray * headerBuffer )

protectedvirtual

Reimplemented from vtkNrrdReader.

int vtkPNrrdReader::GetDataScalarTypeSize ( )

protected

Returns the size, in bytes of the scalar data type (GetDataScalarType).

virtual void vtkPNrrdReader::PartitionController ( const int extent[6] )

protectedvirtual

Break up the controller based on the files each process reads.

Each group comprises the processes that read the same files in the same order. this->GroupedController is set to the group for the current process.

virtual unsigned long vtkPNrrdReader::GetHeaderSize ( vtkMPIOpaqueFileHandle & file )

protectedvirtual

Get the header size of the given open file.

This should be used in liu of the GetHeaderSize methods of the superclass.

virtual void vtkPNrrdReader::SetupFileView	(	vtkMPIOpaqueFileHandle &	file,
		const int	extent[6]
	)

protectedvirtual

Set up a "view" on the open file that will allow you to read the 2D or 3D subarray from the file in one read.

Once you call this method, the file will look as if it contains only the data the local process needs to read in.

virtual void vtkPNrrdReader::ReadSlice	(	int	slice,
		const int	extent[6],
		void *	buffer
	)

protectedvirtual

Given a slice of the data, open the appropriate file, read the data into given buffer, and close the file.

For three dimensional data, always use "slice" 0. Make sure the GroupedController is properly created before calling this using the PartitionController method.

virtual void vtkPNrrdReader::TransformData ( vtkImageData * data )

protectedvirtual

Transform the data from the order read from a file to the order to place in the output data (as defined by the transform).

void vtkPNrrdReader::SetGroupedController ( vtkMultiProcessController * )

protected

A group of processes that are reading the same file (as determined by PartitionController.

virtual void vtkPNrrdReader::ExecuteDataWithInformation	(	vtkDataObject *	output,
		vtkInformation *	outInfo
	)

protectedvirtual

This is a convenience method that is implemented in many subclasses instead of RequestData.

It is called by RequestData.

Reimplemented from vtkImageReader.

Member Data Documentation

vtkMultiProcessController* vtkPNrrdReader::GroupedController

protected

A group of processes that are reading the same file (as determined by PartitionController.

Definition at line 122 of file vtkPNrrdReader.h.

vtkMultiProcessController* vtkPNrrdReader::Controller

protected

Definition at line 128 of file vtkPNrrdReader.h.

The documentation for this class was generated from the following file:

/home/demarle/Builds/VTK/release/Utilities/Doxygen/dox/IO/MPIImage/vtkPNrrdReader.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation