vtkMoleculeReaderBase Class Reference

#include <vtkMoleculeReaderBase.h>

Inheritance diagram for vtkMoleculeReaderBase:

[legend]Collaboration diagram for vtkMoleculeReaderBase:

[legend]List of all members.

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Detailed Description

read Molecular Data files

vtkMoleculeReaderBase is a source object that reads Molecule files The FileName must be specified

Thanks:

Dr. Jean M. Favre who developed and contributed this class

Definition at line 37 of file vtkMoleculeReaderBase.h.

Public Types
typedef vtkPolyDataAlgorithm	Superclass
Public Member Functions
virtual const char *	GetClassName ()
virtual int	IsA (const char *type)
void	PrintSelf (ostream &os, vtkIndent indent)
virtual void	SetFileName (const char *)
virtual char *	GetFileName ()
virtual void	SetBScale (double)
virtual double	GetBScale ()
virtual void	SetHBScale (double)
virtual double	GetHBScale ()
virtual int	GetNumberOfAtoms ()
Static Public Member Functions
static int	IsTypeOf (const char *type)
static vtkMoleculeReaderBase *	SafeDownCast (vtkObject *o)
Protected Member Functions
	vtkMoleculeReaderBase ()
	~vtkMoleculeReaderBase ()
virtual int	RequestData (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
int	ReadMolecule (FILE *fp, vtkPolyData *output)
int	MakeAtomType (const char *atype)
int	MakeBonds (vtkPoints *, vtkIdTypeArray *, vtkCellArray *)
virtual void	ReadSpecificMolecule (FILE *fp)=0
Protected Attributes
char *	FileName
double	BScale
double	HBScale
int	NumberOfAtoms
vtkPoints *	Points
vtkUnsignedCharArray *	RGB
vtkFloatArray *	Radii
vtkIdTypeArray *	AtomType

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Member Typedef Documentation

typedef vtkPolyDataAlgorithm vtkMoleculeReaderBase::Superclass

Reimplemented from vtkPolyDataAlgorithm. Reimplemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader. Definition at line 40 of file vtkMoleculeReaderBase.h.

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Constructor & Destructor Documentation

vtkMoleculeReaderBase::vtkMoleculeReaderBase (   )  [protected]

vtkMoleculeReaderBase::~vtkMoleculeReaderBase (   )  [protected]

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Member Function Documentation

virtual const char* vtkMoleculeReaderBase::GetClassName (   )  [virtual]

Reimplemented from vtkPolyDataAlgorithm. Reimplemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.

static int vtkMoleculeReaderBase::IsTypeOf (  const char *  type  )  [static]

Return 1 if this class type is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeRevisionMacro found in vtkSetGet.h. Reimplemented from vtkPolyDataAlgorithm. Reimplemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.

virtual int vtkMoleculeReaderBase::IsA (  const char *  type  )  [virtual]

Return 1 if this class is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeRevisionMacro found in vtkSetGet.h. Reimplemented from vtkPolyDataAlgorithm. Reimplemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.

static vtkMoleculeReaderBase* vtkMoleculeReaderBase::SafeDownCast (  vtkObject *  o  )  [static]

Reimplemented from vtkPolyDataAlgorithm. Reimplemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.

void vtkMoleculeReaderBase::PrintSelf (  ostream &  os, vtkIndent  indent )  [virtual]

Methods invoked by print to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes. Reimplemented from vtkPolyDataAlgorithm. Reimplemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.

virtual void vtkMoleculeReaderBase::SetFileName (  const char *   )  [virtual]

Reimplemented in vtkGaussianCubeReader.

virtual char* vtkMoleculeReaderBase::GetFileName (   )  [virtual]

Reimplemented in vtkGaussianCubeReader.

virtual void vtkMoleculeReaderBase::SetBScale (  double   )  [virtual]

virtual double vtkMoleculeReaderBase::GetBScale (   )  [virtual]

virtual void vtkMoleculeReaderBase::SetHBScale (  double   )  [virtual]

virtual double vtkMoleculeReaderBase::GetHBScale (   )  [virtual]

virtual int vtkMoleculeReaderBase::GetNumberOfAtoms (   )  [virtual]

virtual int vtkMoleculeReaderBase::RequestData (  vtkInformation *  , vtkInformationVector **  , vtkInformationVector *  )  [protected, virtual]

This is called by the superclass. This is the method you should override. Reimplemented from vtkPolyDataAlgorithm. Reimplemented in vtkGaussianCubeReader.

int vtkMoleculeReaderBase::ReadMolecule (  FILE *  fp, vtkPolyData *  output )  [protected]

int vtkMoleculeReaderBase::MakeAtomType (  const char *  atype  )  [protected]

int vtkMoleculeReaderBase::MakeBonds (  vtkPoints *  , vtkIdTypeArray *  , vtkCellArray *  )  [protected]

virtual void vtkMoleculeReaderBase::ReadSpecificMolecule (  FILE *  fp  )  [protected, pure virtual]

Implemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.

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Member Data Documentation

char* vtkMoleculeReaderBase::FileName [protected]

Reimplemented in vtkGaussianCubeReader. Definition at line 58 of file vtkMoleculeReaderBase.h.

double vtkMoleculeReaderBase::BScale [protected]

Definition at line 59 of file vtkMoleculeReaderBase.h.

double vtkMoleculeReaderBase::HBScale [protected]

Definition at line 61 of file vtkMoleculeReaderBase.h.

int vtkMoleculeReaderBase::NumberOfAtoms [protected]

Definition at line 63 of file vtkMoleculeReaderBase.h.

vtkPoints* vtkMoleculeReaderBase::Points [protected]

Definition at line 70 of file vtkMoleculeReaderBase.h.

vtkUnsignedCharArray* vtkMoleculeReaderBase::RGB [protected]

Definition at line 71 of file vtkMoleculeReaderBase.h.

vtkFloatArray* vtkMoleculeReaderBase::Radii [protected]

Definition at line 72 of file vtkMoleculeReaderBase.h.

vtkIdTypeArray* vtkMoleculeReaderBase::AtomType [protected]

Definition at line 73 of file vtkMoleculeReaderBase.h.

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The documentation for this class was generated from the following file:

• dox/IO/vtkMoleculeReaderBase.h

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