compute dot-product similarity metrics. More...

#include <vtkDotProductSimilarity.h>

Inheritance diagram for vtkDotProductSimilarity:

Collaboration diagram for vtkDotProductSimilarity:

Public Types
typedef vtkTableAlgorithm	Superclass

Public Types inherited from vtkTableAlgorithm
typedef vtkAlgorithm	Superclass

Public Types inherited from vtkAlgorithm
typedef vtkObject	Superclass

enum	DesiredOutputPrecision { SINGLE_PRECISION, DOUBLE_PRECISION, DEFAULT_PRECISION }

Public Types inherited from vtkObject
typedef vtkObjectBase	Superclass

Public Member Functions
virtual int	IsA (const char *type)

vtkDotProductSimilarity *	NewInstance () const

void	PrintSelf (ostream &os, vtkIndent indent)


virtual vtkIdType	GetVectorDimension ()

virtual void	SetVectorDimension (vtkIdType)


virtual int	GetUpperDiagonal ()

virtual void	SetUpperDiagonal (int)


virtual int	GetDiagonal ()

virtual void	SetDiagonal (int)


virtual int	GetLowerDiagonal ()

virtual void	SetLowerDiagonal (int)


virtual int	GetFirstSecond ()

virtual void	SetFirstSecond (int)


virtual int	GetSecondFirst ()

virtual void	SetSecondFirst (int)


virtual double	GetMinimumThreshold ()

virtual void	SetMinimumThreshold (double)


virtual vtkIdType	GetMinimumCount ()

virtual void	SetMinimumCount (vtkIdType)


virtual vtkIdType	GetMaximumCount ()

virtual void	SetMaximumCount (vtkIdType)

Public Member Functions inherited from vtkTableAlgorithm
vtkTableAlgorithm *	NewInstance () const

virtual int	ProcessRequest (vtkInformation , vtkInformationVector , vtkInformationVector )

vtkTable *	GetOutput ()

vtkTable *	GetOutput (int index)

void	SetInputData (vtkDataObject *obj)

void	SetInputData (int index, vtkDataObject *obj)

Public Member Functions inherited from vtkAlgorithm
vtkAlgorithm *	NewInstance () const

int	HasExecutive ()

vtkExecutive *	GetExecutive ()

virtual void	SetExecutive (vtkExecutive *executive)

virtual int	ModifyRequest (vtkInformation *request, int when)

vtkInformation *	GetInputPortInformation (int port)

vtkInformation *	GetOutputPortInformation (int port)

int	GetNumberOfInputPorts ()

int	GetNumberOfOutputPorts ()

void	UpdateProgress (double amount)

vtkInformation *	GetInputArrayInformation (int idx)

void	RemoveAllInputs ()

vtkDataObject *	GetOutputDataObject (int port)

virtual void	RemoveInputConnection (int port, vtkAlgorithmOutput *input)

virtual void	RemoveInputConnection (int port, int idx)

virtual void	RemoveAllInputConnections (int port)

int	GetNumberOfInputConnections (int port)

int	GetTotalNumberOfInputConnections ()

vtkAlgorithmOutput *	GetInputConnection (int port, int index)

vtkAlgorithm *	GetInputAlgorithm (int port, int index, int &algPort)

vtkAlgorithm *	GetInputAlgorithm (int port, int index)

vtkExecutive *	GetInputExecutive (int port, int index)

vtkInformation *	GetInputInformation (int port, int index)

vtkInformation *	GetOutputInformation (int port)

virtual void	UpdateInformation ()

virtual void	UpdateDataObject ()

virtual void	PropagateUpdateExtent ()

virtual void	UpdateWholeExtent ()

void	ConvertTotalInputToPortConnection (int ind, int &port, int &conn)

int	SetUpdateExtentToWholeExtent (int port)

int	SetUpdateExtentToWholeExtent ()

void	SetUpdateExtent (int port, int extent[6])

int	ProcessRequest (vtkInformation request, vtkCollection inInfo, vtkInformationVector *outInfo)

virtual int	ComputePipelineMTime (vtkInformation request, vtkInformationVector inInfoVec, vtkInformationVector outInfoVec, int requestFromOutputPort, unsigned long *mtime)

virtual vtkInformation *	GetInformation ()

virtual void	SetInformation (vtkInformation *)

virtual void	Register (vtkObjectBase *o)

virtual void	UnRegister (vtkObjectBase *o)

virtual void	SetAbortExecute (int)

virtual int	GetAbortExecute ()

virtual void	AbortExecuteOn ()

virtual void	AbortExecuteOff ()

virtual void	SetProgress (double)

virtual double	GetProgress ()

void	SetProgressText (const char *ptext)

virtual char *	GetProgressText ()

virtual unsigned long	GetErrorCode ()

virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, const char *name)

virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, int fieldAttributeType)

virtual void	SetInputArrayToProcess (int idx, vtkInformation *info)

virtual void	SetInputArrayToProcess (int idx, int port, int connection, const char fieldAssociation, const char attributeTypeorName)

vtkDataObject *	GetInputDataObject (int port, int connection)

virtual void	SetInputConnection (int port, vtkAlgorithmOutput *input)

virtual void	SetInputConnection (vtkAlgorithmOutput *input)

virtual void	AddInputConnection (int port, vtkAlgorithmOutput *input)

virtual void	AddInputConnection (vtkAlgorithmOutput *input)

virtual void	SetInputDataObject (int port, vtkDataObject *data)

virtual void	SetInputDataObject (vtkDataObject *data)

virtual void	AddInputDataObject (int port, vtkDataObject *data)

virtual void	AddInputDataObject (vtkDataObject *data)

vtkAlgorithmOutput *	GetOutputPort (int index)

vtkAlgorithmOutput *	GetOutputPort ()

vtkAlgorithm *	GetInputAlgorithm ()

vtkExecutive *	GetInputExecutive ()

vtkInformation *	GetInputInformation ()

virtual void	Update (int port)

virtual void	Update ()

virtual void	SetReleaseDataFlag (int)

virtual int	GetReleaseDataFlag ()

void	ReleaseDataFlagOn ()

void	ReleaseDataFlagOff ()

int	UpdateExtentIsEmpty (vtkInformation pinfo, vtkDataObject output)

int	UpdateExtentIsEmpty (vtkInformation *pinfo, int extentType)

void	SetUpdateExtent (int port, int piece, int numPieces, int ghostLevel)

void	SetUpdateExtent (int piece, int numPieces, int ghostLevel)

void	SetUpdateExtent (int extent[6])

int *	GetUpdateExtent ()

int *	GetUpdateExtent (int port)

void	GetUpdateExtent (int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)

void	GetUpdateExtent (int port, int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)

void	GetUpdateExtent (int extent[6])

void	GetUpdateExtent (int port, int extent[6])

int	GetUpdatePiece ()

int	GetUpdatePiece (int port)

int	GetUpdateNumberOfPieces ()

int	GetUpdateNumberOfPieces (int port)

int	GetUpdateGhostLevel ()

int	GetUpdateGhostLevel (int port)

void	SetProgressObserver (vtkProgressObserver *)

virtual vtkProgressObserver *	GetProgressObserver ()

Public Member Functions inherited from vtkObject
vtkObject *	NewInstance () const

virtual void	DebugOn ()

virtual void	DebugOff ()

bool	GetDebug ()

void	SetDebug (bool debugFlag)

virtual void	Modified ()

virtual unsigned long	GetMTime ()

unsigned long	AddObserver (unsigned long event, vtkCommand *, float priority=0.0f)

unsigned long	AddObserver (const char event, vtkCommand , float priority=0.0f)

vtkCommand *	GetCommand (unsigned long tag)

void	RemoveObserver (vtkCommand *)

void	RemoveObservers (unsigned long event, vtkCommand *)

void	RemoveObservers (const char event, vtkCommand )

int	HasObserver (unsigned long event, vtkCommand *)

int	HasObserver (const char event, vtkCommand )

void	RemoveObserver (unsigned long tag)

void	RemoveObservers (unsigned long event)

void	RemoveObservers (const char *event)

void	RemoveAllObservers ()

int	HasObserver (unsigned long event)

int	HasObserver (const char *event)

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f)

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, bool(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)

int	InvokeEvent (unsigned long event, void *callData)

int	InvokeEvent (const char event, void callData)

int	InvokeEvent (unsigned long event)

int	InvokeEvent (const char *event)

Public Member Functions inherited from vtkObjectBase
const char *	GetClassName () const

virtual void	Delete ()

virtual void	FastDelete ()

void	Print (ostream &os)

void	SetReferenceCount (int)

void	PrintRevisions (ostream &)

virtual void	PrintHeader (ostream &os, vtkIndent indent)

virtual void	PrintTrailer (ostream &os, vtkIndent indent)

int	GetReferenceCount ()

Static Public Member Functions
static vtkDotProductSimilarity *	New ()

static int	IsTypeOf (const char *type)

static vtkDotProductSimilarity *	SafeDownCast (vtkObjectBase *o)

Static Public Member Functions inherited from vtkTableAlgorithm
static vtkTableAlgorithm *	New ()

static int	IsTypeOf (const char *type)

static vtkTableAlgorithm *	SafeDownCast (vtkObjectBase *o)

Static Public Member Functions inherited from vtkAlgorithm
static vtkAlgorithm *	New ()

static int	IsTypeOf (const char *type)

static vtkAlgorithm *	SafeDownCast (vtkObjectBase *o)

static vtkInformationIntegerKey *	INPUT_IS_OPTIONAL ()

static vtkInformationIntegerKey *	INPUT_IS_REPEATABLE ()

static vtkInformationInformationVectorKey *	INPUT_REQUIRED_FIELDS ()

static vtkInformationStringVectorKey *	INPUT_REQUIRED_DATA_TYPE ()

static vtkInformationInformationVectorKey *	INPUT_ARRAYS_TO_PROCESS ()

static vtkInformationIntegerKey *	INPUT_PORT ()

static vtkInformationIntegerKey *	INPUT_CONNECTION ()

static vtkInformationIntegerKey *	CAN_PRODUCE_SUB_EXTENT ()

static vtkInformationIntegerKey *	CAN_HANDLE_PIECE_REQUEST ()

static void	SetDefaultExecutivePrototype (vtkExecutive *proto)

Static Public Member Functions inherited from vtkObject
static int	IsTypeOf (const char *type)

static vtkObject *	SafeDownCast (vtkObjectBase *o)

static vtkObject *	New ()

static void	BreakOnError ()

static void	SetGlobalWarningDisplay (int val)

static void	GlobalWarningDisplayOn ()

static void	GlobalWarningDisplayOff ()

static int	GetGlobalWarningDisplay ()

Static Public Member Functions inherited from vtkObjectBase
static int	IsTypeOf (const char *name)

static vtkObjectBase *	New ()

Protected Member Functions
virtual vtkObjectBase *	NewInstanceInternal () const

	vtkDotProductSimilarity ()

	~vtkDotProductSimilarity ()

int	FillInputPortInformation (int, vtkInformation *)

int	RequestData (vtkInformation , vtkInformationVector , vtkInformationVector )

Protected Member Functions inherited from vtkTableAlgorithm
	vtkTableAlgorithm ()

	~vtkTableAlgorithm ()

virtual int	RequestInformation (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector)

virtual int	FillOutputPortInformation (int port, vtkInformation *info)

virtual int	RequestUpdateExtent (vtkInformation , vtkInformationVector , vtkInformationVector )

Protected Member Functions inherited from vtkAlgorithm
	vtkAlgorithm ()

	~vtkAlgorithm ()

virtual void	SetNumberOfInputPorts (int n)

virtual void	SetNumberOfOutputPorts (int n)

int	InputPortIndexInRange (int index, const char *action)

int	OutputPortIndexInRange (int index, const char *action)

int	GetInputArrayAssociation (int idx, vtkInformationVector **inputVector)

virtual vtkExecutive *	CreateDefaultExecutive ()

virtual void	ReportReferences (vtkGarbageCollector *)

virtual void	SetNumberOfInputConnections (int port, int n)

int	GetInputArrayAssociation (int idx, int connection, vtkInformationVector **inputVector)

int	GetInputArrayAssociation (int idx, vtkDataObject *input)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)

vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)

vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input, int &association)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input, int &association)

vtkInformation *	GetInputArrayFieldInformation (int idx, vtkInformationVector **inputVector)

virtual void	SetNthInputConnection (int port, int index, vtkAlgorithmOutput *input)

void	SetInputDataInternal (int port, vtkDataObject *input)

void	AddInputDataInternal (int port, vtkDataObject *input)

virtual void	SetErrorCode (unsigned long)

Protected Member Functions inherited from vtkObject
	vtkObject ()

virtual	~vtkObject ()

virtual void	RegisterInternal (vtkObjectBase *, int check)

virtual void	UnRegisterInternal (vtkObjectBase *, int check)

void	InternalGrabFocus (vtkCommand mouseEvents, vtkCommand keypressEvents=NULL)

void	InternalReleaseFocus ()

Protected Member Functions inherited from vtkObjectBase
	vtkObjectBase ()

virtual	~vtkObjectBase ()

virtual void	CollectRevisions (ostream &)

	vtkObjectBase (const vtkObjectBase &)

void	operator= (const vtkObjectBase &)

Additional Inherited Members
Public Attributes inherited from vtkAlgorithm
int	AbortExecute

Static Protected Member Functions inherited from vtkAlgorithm
static vtkInformationIntegerKey *	PORT_REQUIREMENTS_FILLED ()

Protected Attributes inherited from vtkAlgorithm
vtkInformation *	Information

double	Progress

char *	ProgressText

vtkProgressObserver *	ProgressObserver

unsigned long	ErrorCode

Protected Attributes inherited from vtkObject
bool	Debug

vtkTimeStamp	MTime

vtkSubjectHelper *	SubjectHelper

Protected Attributes inherited from vtkObjectBase
vtkAtomicInt32	ReferenceCount

vtkWeakPointerBase **	WeakPointers

Static Protected Attributes inherited from vtkAlgorithm
static vtkExecutive *	DefaultExecutivePrototype

Detailed Description

compute dot-product similarity metrics.

Treats matrices as collections of vectors and computes dot-product similarity metrics between vectors.

The results are returned as an edge-table that lists the index of each vector and their computed similarity. The output edge-table is typically used with vtkTableToGraph to create a similarity graph.

This filter can be used with one or two input matrices. If you provide a single matrix as input, every vector in the matrix is compared with every other vector. If you provide two matrices, every vector in the first matrix is compared with every vector in the second matrix.

Note that this filter only computes the dot-product between each pair of vectors; if you want to compute the cosine of the angles between vectors, you will need to normalize the inputs yourself.

Inputs: Input port 0: (required) A vtkDenseArray<double> with two dimensions (a matrix). Input port 1: (optional) A vtkDenseArray<double> with two dimensions (a matrix).

Outputs: Output port 0: A vtkTable containing "source", "target", and "similarity" columns.

Warning: Note that the complexity of this filter is quadratic! It also requires dense arrays as input, in the future it should be generalized to accept sparse arrays.

Thanks:: Developed by Timothy M. Shead (tshea.nosp@m.d@sa.nosp@m.ndia..nosp@m.gov) at Sandia National Laboratories.

Events:: vtkCommand::ProgressEvent

Tests:: vtkDotProductSimilarity (Tests)

Definition at line 69 of file vtkDotProductSimilarity.h.

Member Typedef Documentation

typedef vtkTableAlgorithm vtkDotProductSimilarity::Superclass

Definition at line 73 of file vtkDotProductSimilarity.h.

Constructor & Destructor Documentation

vtkDotProductSimilarity::vtkDotProductSimilarity ( )

protected

vtkDotProductSimilarity::~vtkDotProductSimilarity ( )

protected

Member Function Documentation

static vtkDotProductSimilarity* vtkDotProductSimilarity::New ( )

static

static int vtkDotProductSimilarity::IsTypeOf ( const char * type )

static

virtual int vtkDotProductSimilarity::IsA ( const char * name )

virtual

Return 1 if this class is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkTableAlgorithm.

static vtkDotProductSimilarity* vtkDotProductSimilarity::SafeDownCast ( vtkObjectBase * o )

static

virtual vtkObjectBase* vtkDotProductSimilarity::NewInstanceInternal ( ) const

protectedvirtual

Reimplemented from vtkTableAlgorithm.

vtkDotProductSimilarity* vtkDotProductSimilarity::NewInstance ( ) const

void vtkDotProductSimilarity::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

virtual

Methods invoked by print to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkTableAlgorithm.

virtual vtkIdType vtkDotProductSimilarity::GetVectorDimension ( )

virtual

Controls whether to compute similarities for row-vectors or column-vectors. 0 = rows, 1 = columns.

virtual void vtkDotProductSimilarity::SetVectorDimension ( vtkIdType )

virtual

Controls whether to compute similarities for row-vectors or column-vectors. 0 = rows, 1 = columns.

virtual int vtkDotProductSimilarity::GetUpperDiagonal ( )

virtual

When computing similarities for a single input matrix, controls whether the results will include the upper diagonal of the similarity matrix. Default: true.

virtual void vtkDotProductSimilarity::SetUpperDiagonal ( int )

virtual

When computing similarities for a single input matrix, controls whether the results will include the upper diagonal of the similarity matrix. Default: true.

virtual int vtkDotProductSimilarity::GetDiagonal ( )

virtual

When computing similarities for a single input matrix, controls whether the results will include the diagonal of the similarity matrix. Default: false.

virtual void vtkDotProductSimilarity::SetDiagonal ( int )

virtual

When computing similarities for a single input matrix, controls whether the results will include the diagonal of the similarity matrix. Default: false.

virtual int vtkDotProductSimilarity::GetLowerDiagonal ( )

virtual

When computing similarities for a single input matrix, controls whether the results will include the lower diagonal of the similarity matrix. Default: false.

virtual void vtkDotProductSimilarity::SetLowerDiagonal ( int )

virtual

When computing similarities for a single input matrix, controls whether the results will include the lower diagonal of the similarity matrix. Default: false.

virtual int vtkDotProductSimilarity::GetFirstSecond ( )

virtual

When computing similarities for two input matrices, controls whether the results will include comparisons from the first matrix to the second matrix.

virtual void vtkDotProductSimilarity::SetFirstSecond ( int )

virtual

When computing similarities for two input matrices, controls whether the results will include comparisons from the first matrix to the second matrix.

virtual int vtkDotProductSimilarity::GetSecondFirst ( )

virtual

When computing similarities for two input matrices, controls whether the results will include comparisons from the second matrix to the first matrix.

virtual void vtkDotProductSimilarity::SetSecondFirst ( int )

virtual

When computing similarities for two input matrices, controls whether the results will include comparisons from the second matrix to the first matrix.

virtual double vtkDotProductSimilarity::GetMinimumThreshold ( )

virtual

Specifies a minimum threshold that a similarity must exceed to be included in the output.

virtual void vtkDotProductSimilarity::SetMinimumThreshold ( double )

virtual

Specifies a minimum threshold that a similarity must exceed to be included in the output.

virtual vtkIdType vtkDotProductSimilarity::GetMinimumCount ( )

virtual

Specifies a minimum number of edges to include for each vector.

virtual void vtkDotProductSimilarity::SetMinimumCount ( vtkIdType )

virtual

Specifies a minimum number of edges to include for each vector.

virtual vtkIdType vtkDotProductSimilarity::GetMaximumCount ( )

virtual

Specifies a maximum number of edges to include for each vector.

virtual void vtkDotProductSimilarity::SetMaximumCount ( vtkIdType )

virtual

Specifies a maximum number of edges to include for each vector.

int vtkDotProductSimilarity::FillInputPortInformation	(	int	port,
		vtkInformation *	info
	)

protectedvirtual

Fill the input port information objects for this algorithm. This is invoked by the first call to GetInputPortInformation for each port so subclasses can specify what they can handle.

Reimplemented from vtkTableAlgorithm.

int vtkDotProductSimilarity::RequestData	(	vtkInformation *	request,
		vtkInformationVector **	inputVector,
		vtkInformationVector *	outputVector
	)

protectedvirtual

This is called by the superclass. This is the method you should override.

Reimplemented from vtkTableAlgorithm.

The documentation for this class was generated from the following file:

/home/boeckb/code/depot/group-kitware/vtk/build-release/Utilities/Doxygen/dox/Infovis/Core/vtkDotProductSimilarity.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation