A reader for MNI transformation files. More...

#include <vtkMNITransformReader.h>

Inheritance diagram for vtkMNITransformReader:

Collaboration diagram for vtkMNITransformReader:

Public Types
typedef vtkAlgorithm	Superclass

Public Types inherited from vtkAlgorithm
typedef vtkObject	Superclass

enum	DesiredOutputPrecision { SINGLE_PRECISION, DOUBLE_PRECISION, DEFAULT_PRECISION }

Public Types inherited from vtkObject
typedef vtkObjectBase	Superclass

Public Member Functions
virtual int	IsA (const char *type)

vtkMNITransformReader *	NewInstance () const

virtual void	PrintSelf (ostream &os, vtkIndent indent)

virtual int	CanReadFile (const char *name)

virtual int	GetNumberOfTransforms ()

virtual vtkAbstractTransform *	GetNthTransform (int i)

virtual vtkAbstractTransform *	GetTransform ()

virtual const char *	GetComments ()


virtual void	SetFileName (const char *)

virtual char *	GetFileName ()


virtual const char *	GetFileExtensions ()


virtual const char *	GetDescriptiveName ()

Public Member Functions inherited from vtkAlgorithm
vtkAlgorithm *	NewInstance () const

int	HasExecutive ()

vtkExecutive *	GetExecutive ()

virtual void	SetExecutive (vtkExecutive *executive)

virtual int	ModifyRequest (vtkInformation *request, int when)

vtkInformation *	GetInputPortInformation (int port)

vtkInformation *	GetOutputPortInformation (int port)

int	GetNumberOfInputPorts ()

int	GetNumberOfOutputPorts ()

void	UpdateProgress (double amount)

vtkInformation *	GetInputArrayInformation (int idx)

void	RemoveAllInputs ()

vtkDataObject *	GetOutputDataObject (int port)

virtual void	RemoveInputConnection (int port, vtkAlgorithmOutput *input)

virtual void	RemoveInputConnection (int port, int idx)

virtual void	RemoveAllInputConnections (int port)

int	GetNumberOfInputConnections (int port)

int	GetTotalNumberOfInputConnections ()

vtkAlgorithmOutput *	GetInputConnection (int port, int index)

vtkAlgorithm *	GetInputAlgorithm (int port, int index, int &algPort)

vtkAlgorithm *	GetInputAlgorithm (int port, int index)

vtkExecutive *	GetInputExecutive (int port, int index)

vtkInformation *	GetInputInformation (int port, int index)

vtkInformation *	GetOutputInformation (int port)

virtual void	UpdateInformation ()

virtual void	UpdateDataObject ()

virtual void	PropagateUpdateExtent ()

virtual void	UpdateWholeExtent ()

void	ConvertTotalInputToPortConnection (int ind, int &port, int &conn)

int	SetUpdateExtentToWholeExtent (int port)

int	SetUpdateExtentToWholeExtent ()

void	SetUpdateExtent (int port, int extent[6])

int	ProcessRequest (vtkInformation request, vtkCollection inInfo, vtkInformationVector *outInfo)

virtual int	ComputePipelineMTime (vtkInformation request, vtkInformationVector inInfoVec, vtkInformationVector outInfoVec, int requestFromOutputPort, unsigned long *mtime)

virtual vtkInformation *	GetInformation ()

virtual void	SetInformation (vtkInformation *)

virtual void	Register (vtkObjectBase *o)

virtual void	UnRegister (vtkObjectBase *o)

virtual void	SetAbortExecute (int)

virtual int	GetAbortExecute ()

virtual void	AbortExecuteOn ()

virtual void	AbortExecuteOff ()

virtual void	SetProgress (double)

virtual double	GetProgress ()

void	SetProgressText (const char *ptext)

virtual char *	GetProgressText ()

virtual unsigned long	GetErrorCode ()

virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, const char *name)

virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, int fieldAttributeType)

virtual void	SetInputArrayToProcess (int idx, vtkInformation *info)

virtual void	SetInputArrayToProcess (int idx, int port, int connection, const char fieldAssociation, const char attributeTypeorName)

vtkDataObject *	GetInputDataObject (int port, int connection)

virtual void	SetInputConnection (int port, vtkAlgorithmOutput *input)

virtual void	SetInputConnection (vtkAlgorithmOutput *input)

virtual void	AddInputConnection (int port, vtkAlgorithmOutput *input)

virtual void	AddInputConnection (vtkAlgorithmOutput *input)

virtual void	SetInputDataObject (int port, vtkDataObject *data)

virtual void	SetInputDataObject (vtkDataObject *data)

virtual void	AddInputDataObject (int port, vtkDataObject *data)

virtual void	AddInputDataObject (vtkDataObject *data)

vtkAlgorithmOutput *	GetOutputPort (int index)

vtkAlgorithmOutput *	GetOutputPort ()

vtkAlgorithm *	GetInputAlgorithm ()

vtkExecutive *	GetInputExecutive ()

vtkInformation *	GetInputInformation ()

virtual void	Update (int port)

virtual void	Update ()

virtual void	SetReleaseDataFlag (int)

virtual int	GetReleaseDataFlag ()

void	ReleaseDataFlagOn ()

void	ReleaseDataFlagOff ()

int	UpdateExtentIsEmpty (vtkInformation pinfo, vtkDataObject output)

int	UpdateExtentIsEmpty (vtkInformation *pinfo, int extentType)

void	SetUpdateExtent (int port, int piece, int numPieces, int ghostLevel)

void	SetUpdateExtent (int piece, int numPieces, int ghostLevel)

void	SetUpdateExtent (int extent[6])

int *	GetUpdateExtent ()

int *	GetUpdateExtent (int port)

void	GetUpdateExtent (int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)

void	GetUpdateExtent (int port, int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)

void	GetUpdateExtent (int extent[6])

void	GetUpdateExtent (int port, int extent[6])

int	GetUpdatePiece ()

int	GetUpdatePiece (int port)

int	GetUpdateNumberOfPieces ()

int	GetUpdateNumberOfPieces (int port)

int	GetUpdateGhostLevel ()

int	GetUpdateGhostLevel (int port)

void	SetProgressObserver (vtkProgressObserver *)

virtual vtkProgressObserver *	GetProgressObserver ()

Public Member Functions inherited from vtkObject
vtkObject *	NewInstance () const

virtual void	DebugOn ()

virtual void	DebugOff ()

bool	GetDebug ()

void	SetDebug (bool debugFlag)

virtual void	Modified ()

virtual unsigned long	GetMTime ()

unsigned long	AddObserver (unsigned long event, vtkCommand *, float priority=0.0f)

unsigned long	AddObserver (const char event, vtkCommand , float priority=0.0f)

vtkCommand *	GetCommand (unsigned long tag)

void	RemoveObserver (vtkCommand *)

void	RemoveObservers (unsigned long event, vtkCommand *)

void	RemoveObservers (const char event, vtkCommand )

int	HasObserver (unsigned long event, vtkCommand *)

int	HasObserver (const char event, vtkCommand )

void	RemoveObserver (unsigned long tag)

void	RemoveObservers (unsigned long event)

void	RemoveObservers (const char *event)

void	RemoveAllObservers ()

int	HasObserver (unsigned long event)

int	HasObserver (const char *event)

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f)

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, bool(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)

int	InvokeEvent (unsigned long event, void *callData)

int	InvokeEvent (const char event, void callData)

int	InvokeEvent (unsigned long event)

int	InvokeEvent (const char *event)

Public Member Functions inherited from vtkObjectBase
const char *	GetClassName () const

virtual void	Delete ()

virtual void	FastDelete ()

void	Print (ostream &os)

void	SetReferenceCount (int)

void	PrintRevisions (ostream &)

virtual void	PrintHeader (ostream &os, vtkIndent indent)

virtual void	PrintTrailer (ostream &os, vtkIndent indent)

int	GetReferenceCount ()

Static Public Member Functions
static int	IsTypeOf (const char *type)

static vtkMNITransformReader *	SafeDownCast (vtkObjectBase *o)

static vtkMNITransformReader *	New ()

Static Public Member Functions inherited from vtkAlgorithm
static vtkAlgorithm *	New ()

static int	IsTypeOf (const char *type)

static vtkAlgorithm *	SafeDownCast (vtkObjectBase *o)

static vtkInformationIntegerKey *	INPUT_IS_OPTIONAL ()

static vtkInformationIntegerKey *	INPUT_IS_REPEATABLE ()

static vtkInformationInformationVectorKey *	INPUT_REQUIRED_FIELDS ()

static vtkInformationStringVectorKey *	INPUT_REQUIRED_DATA_TYPE ()

static vtkInformationInformationVectorKey *	INPUT_ARRAYS_TO_PROCESS ()

static vtkInformationIntegerKey *	INPUT_PORT ()

static vtkInformationIntegerKey *	INPUT_CONNECTION ()

static vtkInformationIntegerKey *	CAN_PRODUCE_SUB_EXTENT ()

static vtkInformationIntegerKey *	CAN_HANDLE_PIECE_REQUEST ()

static void	SetDefaultExecutivePrototype (vtkExecutive *proto)

Static Public Member Functions inherited from vtkObject
static int	IsTypeOf (const char *type)

static vtkObject *	SafeDownCast (vtkObjectBase *o)

static vtkObject *	New ()

static void	BreakOnError ()

static void	SetGlobalWarningDisplay (int val)

static void	GlobalWarningDisplayOn ()

static void	GlobalWarningDisplayOff ()

static int	GetGlobalWarningDisplay ()

Static Public Member Functions inherited from vtkObjectBase
static int	IsTypeOf (const char *name)

static vtkObjectBase *	New ()

Protected Member Functions
virtual vtkObjectBase *	NewInstanceInternal () const

	vtkMNITransformReader ()

	~vtkMNITransformReader ()

void	SetTransform (vtkAbstractTransform *transform)

int	ReadLine (istream &infile, char result[256])

int	ReadLineAfterComments (istream &infile, char result[256])

int	SkipWhitespace (istream &infile, char linetext[256], char **cpp)

int	ParseLeftHandSide (istream &infile, char linetext[256], char **cpp, char identifier[256])

int	ParseStringValue (istream &infile, char linetext[256], char **cpp, char data[256])

int	ParseFloatValues (istream &infile, char linetext[256], char *cpp, vtkDoubleArray array)

int	ParseInvertFlagValue (istream &infile, char linetext[256], char *cpp, int invertFlag)

int	ReadLinearTransform (istream &infile, char linetext[256], char **cp)

int	ReadThinPlateSplineTransform (istream &infile, char linetext[256], char **cp)

int	ReadGridTransform (istream &infile, char linetext[256], char **cp)

virtual int	ReadNextTransform (istream &infile, char linetext[256])

virtual int	ReadFile ()

virtual int	ProcessRequest (vtkInformation request, vtkInformationVector inInfo, vtkInformationVector outInfo)

Protected Member Functions inherited from vtkAlgorithm
	vtkAlgorithm ()

	~vtkAlgorithm ()

virtual int	FillInputPortInformation (int port, vtkInformation *info)

virtual int	FillOutputPortInformation (int port, vtkInformation *info)

virtual void	SetNumberOfInputPorts (int n)

virtual void	SetNumberOfOutputPorts (int n)

int	InputPortIndexInRange (int index, const char *action)

int	OutputPortIndexInRange (int index, const char *action)

int	GetInputArrayAssociation (int idx, vtkInformationVector **inputVector)

virtual vtkExecutive *	CreateDefaultExecutive ()

virtual void	ReportReferences (vtkGarbageCollector *)

virtual void	SetNumberOfInputConnections (int port, int n)

int	GetInputArrayAssociation (int idx, int connection, vtkInformationVector **inputVector)

int	GetInputArrayAssociation (int idx, vtkDataObject *input)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)

vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)

vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input, int &association)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input, int &association)

vtkInformation *	GetInputArrayFieldInformation (int idx, vtkInformationVector **inputVector)

virtual void	SetNthInputConnection (int port, int index, vtkAlgorithmOutput *input)

void	SetInputDataInternal (int port, vtkDataObject *input)

void	AddInputDataInternal (int port, vtkDataObject *input)

virtual void	SetErrorCode (unsigned long)

Protected Member Functions inherited from vtkObject
	vtkObject ()

virtual	~vtkObject ()

virtual void	RegisterInternal (vtkObjectBase *, int check)

virtual void	UnRegisterInternal (vtkObjectBase *, int check)

void	InternalGrabFocus (vtkCommand mouseEvents, vtkCommand keypressEvents=NULL)

void	InternalReleaseFocus ()

Protected Member Functions inherited from vtkObjectBase
	vtkObjectBase ()

virtual	~vtkObjectBase ()

virtual void	CollectRevisions (ostream &)

	vtkObjectBase (const vtkObjectBase &)

void	operator= (const vtkObjectBase &)

Protected Attributes
char *	FileName

vtkAbstractTransform *	Transform

vtkCollection *	Transforms

int	LineNumber

char *	Comments

Protected Attributes inherited from vtkAlgorithm
vtkInformation *	Information

double	Progress

char *	ProgressText

vtkProgressObserver *	ProgressObserver

unsigned long	ErrorCode

Protected Attributes inherited from vtkObject
bool	Debug

vtkTimeStamp	MTime

vtkSubjectHelper *	SubjectHelper

Protected Attributes inherited from vtkObjectBase
vtkAtomicInt32	ReferenceCount

vtkWeakPointerBase **	WeakPointers

Additional Inherited Members
Public Attributes inherited from vtkAlgorithm
int	AbortExecute

Static Protected Member Functions inherited from vtkAlgorithm
static vtkInformationIntegerKey *	PORT_REQUIREMENTS_FILLED ()

Static Protected Attributes inherited from vtkAlgorithm
static vtkExecutive *	DefaultExecutivePrototype

Detailed Description

A reader for MNI transformation files.

The MNI .xfm file format is used to store geometrical transformations. Three kinds of transformations are supported by the file format: affine, thin-plate spline, and grid transformations. This file format was developed at the McConnell Brain Imaging Centre at the Montreal Neurological Institute and is used by their software.

See also: vtkMINCImageReader vtkMNITransformWriter

Thanks:: Thanks to David Gobbi for writing this class and Atamai Inc. for contributing it to VTK.

Tests:: vtkMNITransformReader (Tests)

Definition at line 76 of file vtkMNITransformReader.h.

Member Typedef Documentation

typedef vtkAlgorithm vtkMNITransformReader::Superclass

Definition at line 79 of file vtkMNITransformReader.h.

Constructor & Destructor Documentation

vtkMNITransformReader::vtkMNITransformReader ( )

protected

vtkMNITransformReader::~vtkMNITransformReader ( )

protected

Member Function Documentation

static int vtkMNITransformReader::IsTypeOf ( const char * type )

static

virtual int vtkMNITransformReader::IsA ( const char * name )

virtual

Return 1 if this class is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkAlgorithm.

static vtkMNITransformReader* vtkMNITransformReader::SafeDownCast ( vtkObjectBase * o )

static

virtual vtkObjectBase* vtkMNITransformReader::NewInstanceInternal ( ) const

protectedvirtual

Reimplemented from vtkAlgorithm.

vtkMNITransformReader* vtkMNITransformReader::NewInstance ( ) const

static vtkMNITransformReader* vtkMNITransformReader::New ( )

static

virtual void vtkMNITransformReader::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

virtual

Methods invoked by print to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkAlgorithm.

virtual void vtkMNITransformReader::SetFileName ( const char * )

virtual

Set the file name.

virtual char* vtkMNITransformReader::GetFileName ( )

virtual

Set the file name.

virtual const char* vtkMNITransformReader::GetFileExtensions ( )

inlinevirtual

Get the entension for this file format.

Definition at line 92 of file vtkMNITransformReader.h.

virtual const char* vtkMNITransformReader::GetDescriptiveName ( )

inlinevirtual

Get the name of this file format.

Definition at line 98 of file vtkMNITransformReader.h.

virtual int vtkMNITransformReader::CanReadFile ( const char * name )

virtual

Test whether the specified file can be read.

virtual int vtkMNITransformReader::GetNumberOfTransforms ( )

virtual

Get the number of transforms in the file.

virtual vtkAbstractTransform* vtkMNITransformReader::GetNthTransform ( int i )

virtual

Get one of the transforms listed in the file.

virtual vtkAbstractTransform* vtkMNITransformReader::GetTransform ( )

virtual

Get the transform that results from concatenating all of the transforms in the file. This will return null if you have not specified a file name.

virtual const char* vtkMNITransformReader::GetComments ( )

virtual

Get any comments that are included in the file.

void vtkMNITransformReader::SetTransform ( vtkAbstractTransform * transform )

protected

int vtkMNITransformReader::ReadLine	(	istream &	infile,
		char	result[256]
	)

protected

int vtkMNITransformReader::ReadLineAfterComments	(	istream &	infile,
		char	result[256]
	)

protected

int vtkMNITransformReader::SkipWhitespace	(	istream &	infile,
		char	linetext[256],
		char **	cpp
	)

protected

int vtkMNITransformReader::ParseLeftHandSide	(	istream &	infile,
		char	linetext[256],
		char **	cpp,
		char	identifier[256]
	)

protected

int vtkMNITransformReader::ParseStringValue	(	istream &	infile,
		char	linetext[256],
		char **	cpp,
		char	data[256]
	)

protected

int vtkMNITransformReader::ParseFloatValues	(	istream &	infile,
		char	linetext[256],
		char **	cpp,
		vtkDoubleArray *	array
	)

protected

int vtkMNITransformReader::ParseInvertFlagValue	(	istream &	infile,
		char	linetext[256],
		char **	cpp,
		int *	invertFlag
	)

protected

int vtkMNITransformReader::ReadLinearTransform	(	istream &	infile,
		char	linetext[256],
		char **	cp
	)

protected

int vtkMNITransformReader::ReadThinPlateSplineTransform	(	istream &	infile,
		char	linetext[256],
		char **	cp
	)

protected

int vtkMNITransformReader::ReadGridTransform	(	istream &	infile,
		char	linetext[256],
		char **	cp
	)

protected

virtual int vtkMNITransformReader::ReadNextTransform	(	istream &	infile,
		char	linetext[256]
	)

protectedvirtual

virtual int vtkMNITransformReader::ReadFile ( )

protectedvirtual

virtual int vtkMNITransformReader::ProcessRequest	(	vtkInformation *	request,
		vtkInformationVector **	inInfo,
		vtkInformationVector *	outInfo
	)

protectedvirtual

Upstream/Downstream requests form the generalized interface through which executives invoke a algorithm's functionality. Upstream requests correspond to information flow from the algorithm's outputs to its inputs. Downstream requests correspond to information flow from the algorithm's inputs to its outputs. A downstream request is defined by the contents of the request information object. The input to the request is stored in the input information vector passed to ProcessRequest. The results of an downstream request are stored in the output information vector passed to ProcessRequest. An upstream request is defined by the contents of the request information object. The input to the request is stored in the output information vector passed to ProcessRequest. The results of an upstream request are stored in the input information vector passed to ProcessRequest. It returns the boolean status of the pipeline (false means failure).

Reimplemented from vtkAlgorithm.

Member Data Documentation

char* vtkMNITransformReader::FileName

protected

Definition at line 123 of file vtkMNITransformReader.h.

vtkAbstractTransform* vtkMNITransformReader::Transform

protected

Definition at line 124 of file vtkMNITransformReader.h.

vtkCollection* vtkMNITransformReader::Transforms

protected

Definition at line 125 of file vtkMNITransformReader.h.

int vtkMNITransformReader::LineNumber

protected

Definition at line 126 of file vtkMNITransformReader.h.

char* vtkMNITransformReader::Comments

protected

Definition at line 127 of file vtkMNITransformReader.h.

The documentation for this class was generated from the following file:

/home/boeckb/code/depot/group-kitware/vtk/build-release/Utilities/Doxygen/dox/IO/MINC/vtkMNITransformReader.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation