compute a skeletal embedding of the Reeb graph of a scalar field defined on a tetrahedral mesh (vtkUnstructuredGrid). More...

#include <vtkReebGraphVolumeSkeletonFilter.h>

Inheritance diagram for vtkReebGraphVolumeSkeletonFilter:

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Collaboration diagram for vtkReebGraphVolumeSkeletonFilter:

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Public Types
typedef vtkDataObjectAlgorithm	Superclass

Public Types inherited from vtkDataObjectAlgorithm
typedef vtkAlgorithm	Superclass

Public Types inherited from vtkAlgorithm
typedef vtkObject	Superclass

enum	DesiredOutputPrecision { SINGLE_PRECISION, DOUBLE_PRECISION, DEFAULT_PRECISION }

Public Types inherited from vtkObject
typedef vtkObjectBase	Superclass

Public Member Functions
virtual int	IsA (const char *type)

vtkReebGraphVolumeSkeletonFilter *	NewInstance () const

void	PrintSelf (ostream &os, vtkIndent indent)

vtkTable *	GetOutput ()


virtual void	SetNumberOfSamples (int)

virtual int	GetNumberOfSamples ()


virtual void	SetNumberOfSmoothingIterations (int)

virtual int	GetNumberOfSmoothingIterations ()


virtual void	SetFieldId (vtkIdType)

virtual vtkIdType	GetFieldId ()

Public Member Functions inherited from vtkDataObjectAlgorithm
vtkDataObjectAlgorithm *	NewInstance () const

vtkDataObject *	GetInput ()

vtkDataObject *	GetInput (int port)

vtkDataObject *	GetOutput ()

vtkDataObject *	GetOutput (int)

virtual void	SetOutput (vtkDataObject *d)

virtual int	ProcessRequest (vtkInformation , vtkInformationVector , vtkInformationVector )

void	SetInputData (vtkDataObject *)

void	SetInputData (int, vtkDataObject *)

void	AddInputData (vtkDataObject *)

void	AddInputData (int, vtkDataObject *)

Public Member Functions inherited from vtkAlgorithm
vtkAlgorithm *	NewInstance () const

int	HasExecutive ()

vtkExecutive *	GetExecutive ()

virtual void	SetExecutive (vtkExecutive *executive)

virtual int	ModifyRequest (vtkInformation *request, int when)

vtkInformation *	GetInputPortInformation (int port)

vtkInformation *	GetOutputPortInformation (int port)

int	GetNumberOfInputPorts ()

int	GetNumberOfOutputPorts ()

void	UpdateProgress (double amount)

vtkInformation *	GetInputArrayInformation (int idx)

void	RemoveAllInputs ()

vtkDataObject *	GetOutputDataObject (int port)

virtual void	RemoveInputConnection (int port, vtkAlgorithmOutput *input)

virtual void	RemoveInputConnection (int port, int idx)

virtual void	RemoveAllInputConnections (int port)

int	GetNumberOfInputConnections (int port)

int	GetTotalNumberOfInputConnections ()

vtkAlgorithmOutput *	GetInputConnection (int port, int index)

vtkAlgorithm *	GetInputAlgorithm (int port, int index, int &algPort)

vtkAlgorithm *	GetInputAlgorithm (int port, int index)

vtkExecutive *	GetInputExecutive (int port, int index)

vtkInformation *	GetInputInformation (int port, int index)

vtkInformation *	GetOutputInformation (int port)

virtual void	UpdateInformation ()

virtual void	UpdateDataObject ()

virtual void	PropagateUpdateExtent ()

virtual void	UpdateWholeExtent ()

void	ConvertTotalInputToPortConnection (int ind, int &port, int &conn)

int	SetUpdateExtentToWholeExtent (int port)

int	SetUpdateExtentToWholeExtent ()

void	SetUpdateExtent (int port, int extent[6])

int	ProcessRequest (vtkInformation request, vtkCollection inInfo, vtkInformationVector *outInfo)

virtual int	ComputePipelineMTime (vtkInformation request, vtkInformationVector inInfoVec, vtkInformationVector outInfoVec, int requestFromOutputPort, unsigned long *mtime)

virtual vtkInformation *	GetInformation ()

virtual void	SetInformation (vtkInformation *)

virtual void	Register (vtkObjectBase *o)

virtual void	UnRegister (vtkObjectBase *o)

virtual void	SetAbortExecute (int)

virtual int	GetAbortExecute ()

virtual void	AbortExecuteOn ()

virtual void	AbortExecuteOff ()

virtual void	SetProgress (double)

virtual double	GetProgress ()

void	SetProgressText (const char *ptext)

virtual char *	GetProgressText ()

virtual unsigned long	GetErrorCode ()

virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, const char *name)

virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, int fieldAttributeType)

virtual void	SetInputArrayToProcess (int idx, vtkInformation *info)

virtual void	SetInputArrayToProcess (int idx, int port, int connection, const char fieldAssociation, const char attributeTypeorName)

vtkDataObject *	GetInputDataObject (int port, int connection)

virtual void	SetInputConnection (int port, vtkAlgorithmOutput *input)

virtual void	SetInputConnection (vtkAlgorithmOutput *input)

virtual void	AddInputConnection (int port, vtkAlgorithmOutput *input)

virtual void	AddInputConnection (vtkAlgorithmOutput *input)

virtual void	SetInputDataObject (int port, vtkDataObject *data)

virtual void	SetInputDataObject (vtkDataObject *data)

virtual void	AddInputDataObject (int port, vtkDataObject *data)

virtual void	AddInputDataObject (vtkDataObject *data)

vtkAlgorithmOutput *	GetOutputPort (int index)

vtkAlgorithmOutput *	GetOutputPort ()

vtkAlgorithm *	GetInputAlgorithm ()

vtkExecutive *	GetInputExecutive ()

vtkInformation *	GetInputInformation ()

virtual void	Update (int port)

virtual void	Update ()

virtual void	SetReleaseDataFlag (int)

virtual int	GetReleaseDataFlag ()

void	ReleaseDataFlagOn ()

void	ReleaseDataFlagOff ()

int	UpdateExtentIsEmpty (vtkInformation pinfo, vtkDataObject output)

int	UpdateExtentIsEmpty (vtkInformation *pinfo, int extentType)

void	SetUpdateExtent (int port, int piece, int numPieces, int ghostLevel)

void	SetUpdateExtent (int piece, int numPieces, int ghostLevel)

void	SetUpdateExtent (int extent[6])

int *	GetUpdateExtent ()

int *	GetUpdateExtent (int port)

void	GetUpdateExtent (int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)

void	GetUpdateExtent (int port, int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)

void	GetUpdateExtent (int extent[6])

void	GetUpdateExtent (int port, int extent[6])

int	GetUpdatePiece ()

int	GetUpdatePiece (int port)

int	GetUpdateNumberOfPieces ()

int	GetUpdateNumberOfPieces (int port)

int	GetUpdateGhostLevel ()

int	GetUpdateGhostLevel (int port)

void	SetProgressObserver (vtkProgressObserver *)

virtual vtkProgressObserver *	GetProgressObserver ()

Public Member Functions inherited from vtkObject
vtkObject *	NewInstance () const

virtual void	DebugOn ()

virtual void	DebugOff ()

bool	GetDebug ()

void	SetDebug (bool debugFlag)

virtual void	Modified ()

virtual unsigned long	GetMTime ()

unsigned long	AddObserver (unsigned long event, vtkCommand *, float priority=0.0f)

unsigned long	AddObserver (const char event, vtkCommand , float priority=0.0f)

vtkCommand *	GetCommand (unsigned long tag)

void	RemoveObserver (vtkCommand *)

void	RemoveObservers (unsigned long event, vtkCommand *)

void	RemoveObservers (const char event, vtkCommand )

int	HasObserver (unsigned long event, vtkCommand *)

int	HasObserver (const char event, vtkCommand )

void	RemoveObserver (unsigned long tag)

void	RemoveObservers (unsigned long event)

void	RemoveObservers (const char *event)

void	RemoveAllObservers ()

int	HasObserver (unsigned long event)

int	HasObserver (const char *event)

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f)

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, bool(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)

int	InvokeEvent (unsigned long event, void *callData)

int	InvokeEvent (const char event, void callData)

int	InvokeEvent (unsigned long event)

int	InvokeEvent (const char *event)

Public Member Functions inherited from vtkObjectBase
const char *	GetClassName () const

virtual void	Delete ()

virtual void	FastDelete ()

void	Print (ostream &os)

void	SetReferenceCount (int)

void	PrintRevisions (ostream &)

virtual void	PrintHeader (ostream &os, vtkIndent indent)

virtual void	PrintTrailer (ostream &os, vtkIndent indent)

int	GetReferenceCount ()

Static Public Member Functions
static vtkReebGraphVolumeSkeletonFilter *	New ()

static int	IsTypeOf (const char *type)

static vtkReebGraphVolumeSkeletonFilter *	SafeDownCast (vtkObjectBase *o)

Static Public Member Functions inherited from vtkDataObjectAlgorithm
static vtkDataObjectAlgorithm *	New ()

static int	IsTypeOf (const char *type)

static vtkDataObjectAlgorithm *	SafeDownCast (vtkObjectBase *o)

Static Public Member Functions inherited from vtkAlgorithm
static vtkAlgorithm *	New ()

static int	IsTypeOf (const char *type)

static vtkAlgorithm *	SafeDownCast (vtkObjectBase *o)

static vtkInformationIntegerKey *	INPUT_IS_OPTIONAL ()

static vtkInformationIntegerKey *	INPUT_IS_REPEATABLE ()

static vtkInformationInformationVectorKey *	INPUT_REQUIRED_FIELDS ()

static vtkInformationStringVectorKey *	INPUT_REQUIRED_DATA_TYPE ()

static vtkInformationInformationVectorKey *	INPUT_ARRAYS_TO_PROCESS ()

static vtkInformationIntegerKey *	INPUT_PORT ()

static vtkInformationIntegerKey *	INPUT_CONNECTION ()

static vtkInformationIntegerKey *	CAN_PRODUCE_SUB_EXTENT ()

static vtkInformationIntegerKey *	CAN_HANDLE_PIECE_REQUEST ()

static void	SetDefaultExecutivePrototype (vtkExecutive *proto)

Static Public Member Functions inherited from vtkObject
static int	IsTypeOf (const char *type)

static vtkObject *	SafeDownCast (vtkObjectBase *o)

static vtkObject *	New ()

static void	BreakOnError ()

static void	SetGlobalWarningDisplay (int val)

static void	GlobalWarningDisplayOn ()

static void	GlobalWarningDisplayOff ()

static int	GetGlobalWarningDisplay ()

Static Public Member Functions inherited from vtkObjectBase
static int	IsTypeOf (const char *name)

static vtkObjectBase *	New ()

Protected Member Functions
virtual vtkObjectBase *	NewInstanceInternal () const

	vtkReebGraphVolumeSkeletonFilter ()

	~vtkReebGraphVolumeSkeletonFilter ()

int	FillInputPortInformation (int portNumber, vtkInformation *)

int	FillOutputPortInformation (int portNumber, vtkInformation *info)

int	RequestData (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector)

Protected Member Functions inherited from vtkDataObjectAlgorithm
	vtkDataObjectAlgorithm ()

	~vtkDataObjectAlgorithm ()

virtual int	RequestInformation (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector)

virtual int	RequestDataObject (vtkInformation , vtkInformationVector , vtkInformationVector )

virtual int	RequestUpdateExtent (vtkInformation , vtkInformationVector , vtkInformationVector )

Protected Member Functions inherited from vtkAlgorithm
	vtkAlgorithm ()

	~vtkAlgorithm ()

virtual void	SetNumberOfInputPorts (int n)

virtual void	SetNumberOfOutputPorts (int n)

int	InputPortIndexInRange (int index, const char *action)

int	OutputPortIndexInRange (int index, const char *action)

int	GetInputArrayAssociation (int idx, vtkInformationVector **inputVector)

virtual vtkExecutive *	CreateDefaultExecutive ()

virtual void	ReportReferences (vtkGarbageCollector *)

virtual void	SetNumberOfInputConnections (int port, int n)

int	GetInputArrayAssociation (int idx, int connection, vtkInformationVector **inputVector)

int	GetInputArrayAssociation (int idx, vtkDataObject *input)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)

vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)

vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input, int &association)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input, int &association)

vtkInformation *	GetInputArrayFieldInformation (int idx, vtkInformationVector **inputVector)

virtual void	SetNthInputConnection (int port, int index, vtkAlgorithmOutput *input)

void	SetInputDataInternal (int port, vtkDataObject *input)

void	AddInputDataInternal (int port, vtkDataObject *input)

virtual void	SetErrorCode (unsigned long)

Protected Member Functions inherited from vtkObject
	vtkObject ()

virtual	~vtkObject ()

virtual void	RegisterInternal (vtkObjectBase *, int check)

virtual void	UnRegisterInternal (vtkObjectBase *, int check)

void	InternalGrabFocus (vtkCommand mouseEvents, vtkCommand keypressEvents=NULL)

void	InternalReleaseFocus ()

Protected Member Functions inherited from vtkObjectBase
	vtkObjectBase ()

virtual	~vtkObjectBase ()

virtual void	CollectRevisions (ostream &)

	vtkObjectBase (const vtkObjectBase &)

void	operator= (const vtkObjectBase &)

Protected Attributes
vtkIdType	FieldId

int	NumberOfSamples

int	NumberOfSmoothingIterations

Protected Attributes inherited from vtkAlgorithm
vtkInformation *	Information

double	Progress

char *	ProgressText

vtkProgressObserver *	ProgressObserver

unsigned long	ErrorCode

Protected Attributes inherited from vtkObject
bool	Debug

vtkTimeStamp	MTime

vtkSubjectHelper *	SubjectHelper

Protected Attributes inherited from vtkObjectBase
vtkAtomicInt32	ReferenceCount

vtkWeakPointerBase **	WeakPointers

Additional Inherited Members
Public Attributes inherited from vtkAlgorithm
int	AbortExecute

Static Protected Member Functions inherited from vtkAlgorithm
static vtkInformationIntegerKey *	PORT_REQUIREMENTS_FILLED ()

Static Protected Attributes inherited from vtkAlgorithm
static vtkExecutive *	DefaultExecutivePrototype

Detailed Description

compute a skeletal embedding of the Reeb graph of a scalar field defined on a tetrahedral mesh (vtkUnstructuredGrid).

The filter takes a vtkUnstructuredGrid as an input (port 0), along with a vtkReebGraph (port 1). The filter samples each arc of the Reeb graph and embeds the samples on the barycenter of the corresponding field contour. The number of (evenly distributed) arc samples can be defined with SetNumberOfSamples() (default value: 10). The skeleton can be optionally smoothed with SetNumberOfSmoothingIterations() (default value: 10). The filter will first try to pull as a scalar field the vtkDataArray with Id 'FieldId' of the vtkPolyData, see SetFieldId() (default: 0). The filter will abort if this field does not exist.

The filter outputs a vtkTable of points (double[3]). Each column contains the samples (sorted by function value) of the corresponding arc. The first and the last entry of the column corresponds to the critical nodes at the extremity of the arc (each column has NumberOfSamples + 2 entries).

The skeleton can be rendered by linking the samples with geometrical primitives (for instance, spheres at critical nodes and cylinders between intermediary samples, see Graphics/Testing/Cxx/TestReebGraph.cxx).

Tests:: vtkReebGraphVolumeSkeletonFilter (Tests)

Definition at line 55 of file vtkReebGraphVolumeSkeletonFilter.h.

Member Typedef Documentation

typedef vtkDataObjectAlgorithm vtkReebGraphVolumeSkeletonFilter::Superclass

Definition at line 61 of file vtkReebGraphVolumeSkeletonFilter.h.

Constructor & Destructor Documentation

vtkReebGraphVolumeSkeletonFilter::vtkReebGraphVolumeSkeletonFilter ( )

protected

vtkReebGraphVolumeSkeletonFilter::~vtkReebGraphVolumeSkeletonFilter ( )

protected

Member Function Documentation

static vtkReebGraphVolumeSkeletonFilter* vtkReebGraphVolumeSkeletonFilter::New ( )

static

static int vtkReebGraphVolumeSkeletonFilter::IsTypeOf ( const char * type )

static

virtual int vtkReebGraphVolumeSkeletonFilter::IsA ( const char * name )

virtual

Return 1 if this class is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkDataObjectAlgorithm.

static vtkReebGraphVolumeSkeletonFilter* vtkReebGraphVolumeSkeletonFilter::SafeDownCast ( vtkObjectBase * o )

static

virtual vtkObjectBase* vtkReebGraphVolumeSkeletonFilter::NewInstanceInternal ( ) const

protectedvirtual

Reimplemented from vtkDataObjectAlgorithm.

vtkReebGraphVolumeSkeletonFilter* vtkReebGraphVolumeSkeletonFilter::NewInstance ( ) const

void vtkReebGraphVolumeSkeletonFilter::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

virtual

Methods invoked by print to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkDataObjectAlgorithm.

virtual void vtkReebGraphVolumeSkeletonFilter::SetNumberOfSamples ( int )

virtual

Set the number of samples along each arc of the Reeb graph Default value: 5

virtual int vtkReebGraphVolumeSkeletonFilter::GetNumberOfSamples ( )

virtual

Set the number of samples along each arc of the Reeb graph Default value: 5

virtual void vtkReebGraphVolumeSkeletonFilter::SetNumberOfSmoothingIterations ( int )

virtual

Set the number of optional smoothing iterations Default value: 30

virtual int vtkReebGraphVolumeSkeletonFilter::GetNumberOfSmoothingIterations ( )

virtual

Set the number of optional smoothing iterations Default value: 30

virtual void vtkReebGraphVolumeSkeletonFilter::SetFieldId ( vtkIdType )

virtual

Set the scalar field Id Default value: 0

virtual vtkIdType vtkReebGraphVolumeSkeletonFilter::GetFieldId ( )

virtual

Set the scalar field Id Default value: 0

vtkTable* vtkReebGraphVolumeSkeletonFilter::GetOutput ( )

int vtkReebGraphVolumeSkeletonFilter::FillInputPortInformation	(	int	port,
		vtkInformation *	info
	)

protectedvirtual

Fill the input port information objects for this algorithm. This is invoked by the first call to GetInputPortInformation for each port so subclasses can specify what they can handle.

Reimplemented from vtkDataObjectAlgorithm.

int vtkReebGraphVolumeSkeletonFilter::FillOutputPortInformation	(	int	port,
		vtkInformation *	info
	)

protectedvirtual

Fill the output port information objects for this algorithm. This is invoked by the first call to GetOutputPortInformation for each port so subclasses can specify what they can handle.

Reimplemented from vtkDataObjectAlgorithm.

int vtkReebGraphVolumeSkeletonFilter::RequestData	(	vtkInformation *	request,
		vtkInformationVector **	inputVector,
		vtkInformationVector *	outputVector
	)