VTK
vtkNewickTreeReader.h
Go to the documentation of this file.
1 /*=========================================================================
2 
3  Program: Visualization Toolkit
4  Module: vtkNewickTreeReader.h
5 
6  Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
7  All rights reserved.
8  See Copyright.txt or http://www.kitware.com/Copyright.htm for details.
9 
10  This software is distributed WITHOUT ANY WARRANTY; without even
11  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
12  PURPOSE. See the above copyright notice for more information.
13 
14 =========================================================================*/
33 #ifndef vtkNewickTreeReader_h
34 #define vtkNewickTreeReader_h
35 
36 #include "vtkIOInfovisModule.h" // For export macro
37 #include "vtkDataReader.h"
38 
39 class vtkDoubleArray;
41 class vtkStringArray;
42 class vtkTree;
43 
45 {
46 public:
47  static vtkNewickTreeReader *New();
49  void PrintSelf(ostream& os, vtkIndent indent);
50 
52 
53  vtkTree *GetOutput();
54  vtkTree *GetOutput(int idx);
55  void SetOutput(vtkTree *output);
56  int ReadNewickTree(const char * buffer, vtkTree & tree);
58 
59 protected:
62 
65 
66  // Since the Outputs[0] has the same UpdateExtent format
67  // as the generic DataObject we can copy the UpdateExtent
68  // as a default behavior.
71 
72  virtual int FillOutputPortInformation(int, vtkInformation*);
73  void CountNodes(const char * buffer, vtkIdType *numNodes);
74  vtkIdType BuildTree(char *buffer, vtkMutableDirectedGraph *g,
75  vtkDoubleArray *weights, vtkStringArray *names, vtkIdType parent);
76 private:
77  vtkNewickTreeReader(const vtkNewickTreeReader&); // Not implemented.
78  void operator=(const vtkNewickTreeReader&); // Not implemented.
79 };
80 
81 #endif
read vtkTree from Newick formatted file
Store vtkAlgorithm input/output information.
#define VTKIOINFOVIS_EXPORT
virtual int RequestData(vtkInformation *, vtkInformationVector **, vtkInformationVector *)
a vtkAbstractArray subclass for strings
int vtkIdType
Definition: vtkType.h:275
dynamic, self-adjusting array of double
static vtkDataReader * New()
void PrintSelf(ostream &os, vtkIndent indent)
helper superclass for objects that read vtk data files
Definition: vtkDataReader.h:48
virtual int FillOutputPortInformation(int port, vtkInformation *info)
a simple class to control print indentation
Definition: vtkIndent.h:38
An editable directed graph.
virtual int RequestUpdateExtent(vtkInformation *, vtkInformationVector **, vtkInformationVector *)
Store zero or more vtkInformation instances.
A rooted tree data structure.
Definition: vtkTree.h:59