VTK
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Store NIfTI header information. More...
#include <vtkNIFTIImageHeader.h>
Public Member Functions | |
virtual void | PrintSelf (ostream &os, vtkIndent indent) |
const char * | GetMagic () |
vtkTypeInt64 | GetVoxOffset () |
int | GetDataType () |
int | GetBitPix () |
void | Initialize () |
void | DeepCopy (vtkNIFTIImageHeader *o) |
vtkTypeInt64 | GetDim (int i) |
double | GetPixDim (int i) |
virtual void | SetIntentCode (int) |
int | GetIntentCode () |
void | SetIntentName (const char *name) |
const char * | GetIntentName () |
virtual void | SetIntentP1 (double) |
double | GetIntentP1 () |
virtual void | SetIntentP2 (double) |
double | GetIntentP2 () |
virtual void | SetIntentP3 (double) |
double | GetIntentP3 () |
virtual void | SetSclSlope (double) |
double | GetSclSlope () |
virtual void | SetSclInter (double) |
double | GetSclInter () |
virtual void | SetCalMin (double) |
double | GetCalMin () |
virtual void | SetCalMax (double) |
double | GetCalMax () |
virtual void | SetSliceDuration (double) |
double | GetSliceDuration () |
virtual void | SetTOffset (double) |
double | GetTOffset () |
virtual void | SetSliceStart (vtkTypeInt64) |
vtkTypeInt64 | GetSliceStart () |
virtual void | SetSliceEnd (vtkTypeInt64) |
vtkTypeInt64 | GetSliceEnd () |
virtual void | SetSliceCode (int) |
int | GetSliceCode () |
virtual void | SetXYZTUnits (int) |
int | GetXYZTUnits () |
virtual void | SetDimInfo (int) |
int | GetDimInfo () |
void | SetDescrip (const char *descrip) |
const char * | GetDescrip () |
void | SetAuxFile (const char *auxfile) |
const char * | GetAuxFile () |
virtual void | SetQFormCode (int) |
int | GetQFormCode () |
virtual void | SetSFormCode (int) |
int | GetSFormCode () |
virtual void | SetQuaternB (double) |
double | GetQuaternB () |
virtual void | SetQuaternC (double) |
double | GetQuaternC () |
virtual void | SetQuaternD (double) |
double | GetQuaternD () |
virtual void | SetQOffsetX (double) |
double | GetQOffsetX () |
virtual void | SetQOffsetY (double) |
double | GetQOffsetY () |
virtual void | SetQOffsetZ (double) |
double | GetQOffsetZ () |
virtual void | SetSRowX (double, double, double, double) |
virtual void | SetSRowX (double[4]) |
virtual double * | GetSRowX () |
virtual void | GetSRowX (double &, double &, double &, double &) |
virtual void | GetSRowX (double[4]) |
virtual void | SetSRowY (double, double, double, double) |
virtual void | SetSRowY (double[4]) |
virtual double * | GetSRowY () |
virtual void | GetSRowY (double &, double &, double &, double &) |
virtual void | GetSRowY (double[4]) |
virtual void | SetSRowZ (double, double, double, double) |
virtual void | SetSRowZ (double[4]) |
virtual double * | GetSRowZ () |
virtual void | GetSRowZ (double &, double &, double &, double &) |
virtual void | GetSRowZ (double[4]) |
void | SetHeader (const nifti_1_header *hdr) |
void | GetHeader (nifti_1_header *hdr) |
void | SetHeader (const nifti_2_header *hdr) |
void | GetHeader (nifti_2_header *hdr) |
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vtkObject * | NewInstance () const |
virtual void | DebugOn () |
virtual void | DebugOff () |
bool | GetDebug () |
void | SetDebug (bool debugFlag) |
virtual void | Modified () |
virtual unsigned long | GetMTime () |
unsigned long | AddObserver (unsigned long event, vtkCommand *, float priority=0.0f) |
unsigned long | AddObserver (const char *event, vtkCommand *, float priority=0.0f) |
vtkCommand * | GetCommand (unsigned long tag) |
void | RemoveObserver (vtkCommand *) |
void | RemoveObservers (unsigned long event, vtkCommand *) |
void | RemoveObservers (const char *event, vtkCommand *) |
int | HasObserver (unsigned long event, vtkCommand *) |
int | HasObserver (const char *event, vtkCommand *) |
void | RemoveObserver (unsigned long tag) |
void | RemoveObservers (unsigned long event) |
void | RemoveObservers (const char *event) |
void | RemoveAllObservers () |
int | HasObserver (unsigned long event) |
int | HasObserver (const char *event) |
template<class U , class T > | |
unsigned long | AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f) |
template<class U , class T > | |
unsigned long | AddObserver (unsigned long event, U observer, void(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f) |
template<class U , class T > | |
unsigned long | AddObserver (unsigned long event, U observer, bool(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f) |
int | InvokeEvent (unsigned long event, void *callData) |
int | InvokeEvent (const char *event, void *callData) |
int | InvokeEvent (unsigned long event) |
int | InvokeEvent (const char *event) |
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const char * | GetClassName () const |
virtual void | Delete () |
virtual void | FastDelete () |
void | Print (ostream &os) |
virtual void | Register (vtkObjectBase *o) |
virtual void | UnRegister (vtkObjectBase *o) |
void | SetReferenceCount (int) |
void | PrintRevisions (ostream &) |
virtual void | PrintHeader (ostream &os, vtkIndent indent) |
virtual void | PrintTrailer (ostream &os, vtkIndent indent) |
int | GetReferenceCount () |
Protected Member Functions | |
vtkNIFTIImageHeader () | |
~vtkNIFTIImageHeader () | |
void | SetStringValue (char *x, const char *y, size_t n) |
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vtkObject () | |
virtual | ~vtkObject () |
virtual void | RegisterInternal (vtkObjectBase *, int check) |
virtual void | UnRegisterInternal (vtkObjectBase *, int check) |
void | InternalGrabFocus (vtkCommand *mouseEvents, vtkCommand *keypressEvents=NULL) |
void | InternalReleaseFocus () |
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vtkObjectBase () | |
virtual | ~vtkObjectBase () |
virtual void | CollectRevisions (ostream &) |
virtual void | ReportReferences (vtkGarbageCollector *) |
vtkObjectBase (const vtkObjectBase &) | |
void | operator= (const vtkObjectBase &) |
Additional Inherited Members | |
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static int | IsTypeOf (const char *type) |
static vtkObject * | SafeDownCast (vtkObjectBase *o) |
static vtkObject * | New () |
static void | BreakOnError () |
static void | SetGlobalWarningDisplay (int val) |
static void | GlobalWarningDisplayOn () |
static void | GlobalWarningDisplayOff () |
static int | GetGlobalWarningDisplay () |
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static int | IsTypeOf (const char *name) |
static vtkObjectBase * | New () |
Store NIfTI header information.
This class stores the header of a NIfTI file in a VTK-friendly format. By using this class, it is possible to specify the header information that will be stored in a file written by the vtkNIFTIImageWriter. Note that the SForm and QForm orientation information in this class will be ignored by the writer if an SForm and QForm have been explicitly set via the writer's SetSForm and SetQForm methods. Also note that all info like Dim, PixDim, DataType, etc. will be ignored by the writer because this information must instead be taken from the vtkImageData information. Finally, note that the vtkNIFTIImageWriter will ignore the Descrip field, since it has its own SetDescription method.
Definition at line 48 of file vtkNIFTIImageHeader.h.
Static method for construction.
Definition at line 176 of file vtkNIFTIImageHeader.h.
NIFTI intent codes.
Definition at line 54 of file vtkNIFTIImageHeader.h.
NIFTI transform codes.
Enumerator | |
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XFormUnkown | |
XFormScannerAnat | |
XFormAlignedAnat | |
XFormTalairach | |
XFormMNI152 |
Definition at line 100 of file vtkNIFTIImageHeader.h.
NIFTI slice codes.
Enumerator | |
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SliceUnknown | |
SliceSeqInc | |
SliceSeqDec | |
SliceAltInc | |
SliceAltDec | |
SliceAltInc2 | |
SliceAltDec2 |
Definition at line 111 of file vtkNIFTIImageHeader.h.
NIFTI unit codes.
Enumerator | |
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UnitsUnknown | |
UnitsMeter | |
UnitsMM | |
UnitsMicron | |
UnitsSpace | |
UnitsSec | |
UnitsMSec | |
UnitsUSec | |
UnitsHz | |
UnitsPPM | |
UnitsRads | |
UnitsTime |
Definition at line 124 of file vtkNIFTIImageHeader.h.
NIFTI data types. Types RGB24 and RGB32 are represented in VTK as a multi-component unsigned char image. Complex values are represented as two-component images. The NIFTI types Float128 and Complex256 are not supported.
Enumerator | |
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TypeUInt8 | |
TypeInt16 | |
TypeInt32 | |
TypeFloat32 | |
TypeComplex64 | |
TypeFloat64 | |
TypeRGB24 | |
TypeInt8 | |
TypeUInt16 | |
TypeUInt32 | |
TypeInt64 | |
TypeUInt64 | |
TypeFloat128 | |
TypeComplex128 | |
TypeComplex256 | |
TypeRGBA32 |
Definition at line 145 of file vtkNIFTIImageHeader.h.
NIFTI header sizes.
Enumerator | |
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NIFTI1HeaderSize | |
NIFTI2HeaderSize |
Definition at line 167 of file vtkNIFTIImageHeader.h.
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Static method for construction.
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Static method for construction.
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Static method for construction.
Reimplemented from vtkObject.
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Static method for construction.
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Static method for construction.
Reimplemented from vtkObject.
vtkNIFTIImageHeader* vtkNIFTIImageHeader::NewInstance | ( | ) | const |
Static method for construction.
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Print information about this object.
Reimplemented from vtkObject.
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Get the magic number for the NIFTI file as a null-terminated string.
Definition at line 183 of file vtkNIFTIImageHeader.h.
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Get the offset to the pixel data within the file.
Definition at line 186 of file vtkNIFTIImageHeader.h.
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Get the data type.
Definition at line 189 of file vtkNIFTIImageHeader.h.
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Get the number of bits per pixel.
Definition at line 192 of file vtkNIFTIImageHeader.h.
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Get the nth dimension of the data, where GetDim(0) returns the number of dimensions that are defined for the file.
Definition at line 197 of file vtkNIFTIImageHeader.h.
Get the sample spacing in the nth dimension. If GetPixDim(0) is negative, then the quaternion for the qform describes the correct orientation only after the slice ordering has been reversed.
Definition at line 205 of file vtkNIFTIImageHeader.h.
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Get the NIFTI intent code. This is an enumerated value in the NIFTI header that states what the data is intended to be used for.
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Get the NIFTI intent code. This is an enumerated value in the NIFTI header that states what the data is intended to be used for.
Definition at line 213 of file vtkNIFTIImageHeader.h.
void vtkNIFTIImageHeader::SetIntentName | ( | const char * | name | ) |
Get the intent name. This should match the intent code.
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Get the intent name. This should match the intent code.
Definition at line 219 of file vtkNIFTIImageHeader.h.
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Get one of the NIFTI intent parameters. The definition of these parameters varies according to the IntentCode.
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Get one of the NIFTI intent parameters. The definition of these parameters varies according to the IntentCode.
Definition at line 226 of file vtkNIFTIImageHeader.h.
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Get one of the NIFTI intent parameters. The definition of these parameters varies according to the IntentCode.
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Get one of the NIFTI intent parameters. The definition of these parameters varies according to the IntentCode.
Definition at line 228 of file vtkNIFTIImageHeader.h.
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Get one of the NIFTI intent parameters. The definition of these parameters varies according to the IntentCode.
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Get one of the NIFTI intent parameters. The definition of these parameters varies according to the IntentCode.
Definition at line 230 of file vtkNIFTIImageHeader.h.
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Get the scale and slope to apply to the data in order to get the real-valued data values.
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Get the scale and slope to apply to the data in order to get the real-valued data values.
Definition at line 237 of file vtkNIFTIImageHeader.h.
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Get the scale and slope to apply to the data in order to get the real-valued data values.
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Get the scale and slope to apply to the data in order to get the real-valued data values.
Definition at line 239 of file vtkNIFTIImageHeader.h.
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Get the calibrated range of the data, i.e. the values stored in the cal_min and cal_max fields in the header.
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Get the calibrated range of the data, i.e. the values stored in the cal_min and cal_max fields in the header.
Definition at line 246 of file vtkNIFTIImageHeader.h.
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Get the calibrated range of the data, i.e. the values stored in the cal_min and cal_max fields in the header.
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Get the calibrated range of the data, i.e. the values stored in the cal_min and cal_max fields in the header.
Definition at line 248 of file vtkNIFTIImageHeader.h.
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Get the slice_duration and toffset from the header.
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Get the slice_duration and toffset from the header.
Definition at line 254 of file vtkNIFTIImageHeader.h.
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Get the slice_duration and toffset from the header.
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Get the slice_duration and toffset from the header.
Definition at line 256 of file vtkNIFTIImageHeader.h.
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Get the slice range for the data.
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Get the slice range for the data.
Definition at line 262 of file vtkNIFTIImageHeader.h.
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Get the slice range for the data.
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Get the slice range for the data.
Definition at line 264 of file vtkNIFTIImageHeader.h.
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Get the slice code for the data.
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Get the slice code for the data.
Definition at line 270 of file vtkNIFTIImageHeader.h.
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Get a bitfield that describes the units for the first 4 dims.
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Get a bitfield that describes the units for the first 4 dims.
Definition at line 276 of file vtkNIFTIImageHeader.h.
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Get a bitfield with extra information about the dimensions, it states which dimensions are the phase encode, frequency encode, and slice encode dimensions for MRI acquisitions.
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Get a bitfield with extra information about the dimensions, it states which dimensions are the phase encode, frequency encode, and slice encode dimensions for MRI acquisitions.
Definition at line 284 of file vtkNIFTIImageHeader.h.
void vtkNIFTIImageHeader::SetDescrip | ( | const char * | descrip | ) |
Get a null-terminated file descriptor, this usually gives the name of the software that wrote the file. It will have a maximum length of 80 characters. Use ASCII to ensure compatibility with all NIFTI software, the NIFTI standard itself does not specify what encodings are permitted.
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Get a null-terminated file descriptor, this usually gives the name of the software that wrote the file. It will have a maximum length of 80 characters. Use ASCII to ensure compatibility with all NIFTI software, the NIFTI standard itself does not specify what encodings are permitted.
Definition at line 294 of file vtkNIFTIImageHeader.h.
void vtkNIFTIImageHeader::SetAuxFile | ( | const char * | auxfile | ) |
Get an auxilliary file, e.g. a color table, that is associated with this data. The length of the filename must be a maximum of 24 characters, and it will be assumed to be in the same directory as the NIFTI file.
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Get an auxilliary file, e.g. a color table, that is associated with this data. The length of the filename must be a maximum of 24 characters, and it will be assumed to be in the same directory as the NIFTI file.
Definition at line 303 of file vtkNIFTIImageHeader.h.
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Get the QForm or SForm code.
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Get the QForm or SForm code.
Definition at line 309 of file vtkNIFTIImageHeader.h.
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Get the QForm or SForm code.
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Get the QForm or SForm code.
Definition at line 311 of file vtkNIFTIImageHeader.h.
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Get information about the quaternion transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a quaternion has been set via vtkNIFTIImageWriter::SetQFormMatrix().
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Get information about the quaternion transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a quaternion has been set via vtkNIFTIImageWriter::SetQFormMatrix().
Definition at line 319 of file vtkNIFTIImageHeader.h.
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Get information about the quaternion transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a quaternion has been set via vtkNIFTIImageWriter::SetQFormMatrix().
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Get information about the quaternion transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a quaternion has been set via vtkNIFTIImageWriter::SetQFormMatrix().
Definition at line 321 of file vtkNIFTIImageHeader.h.
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Get information about the quaternion transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a quaternion has been set via vtkNIFTIImageWriter::SetQFormMatrix().
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Get information about the quaternion transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a quaternion has been set via vtkNIFTIImageWriter::SetQFormMatrix().
Definition at line 323 of file vtkNIFTIImageHeader.h.
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Get information about the quaternion transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a quaternion has been set via vtkNIFTIImageWriter::SetQFormMatrix().
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Get information about the quaternion transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a quaternion has been set via vtkNIFTIImageWriter::SetQFormMatrix().
Definition at line 325 of file vtkNIFTIImageHeader.h.
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Get information about the quaternion transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a quaternion has been set via vtkNIFTIImageWriter::SetQFormMatrix().
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Get information about the quaternion transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a quaternion has been set via vtkNIFTIImageWriter::SetQFormMatrix().
Definition at line 327 of file vtkNIFTIImageHeader.h.
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Get information about the quaternion transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a quaternion has been set via vtkNIFTIImageWriter::SetQFormMatrix().
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Get information about the quaternion transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a quaternion has been set via vtkNIFTIImageWriter::SetQFormMatrix().
Definition at line 329 of file vtkNIFTIImageHeader.h.
Get information about the matrix transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a matrix has been set via vtkNIFTIImageWriter::SetSFormMatrix().
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Get information about the matrix transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a matrix has been set via vtkNIFTIImageWriter::SetSFormMatrix().
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Get information about the matrix transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a matrix has been set via vtkNIFTIImageWriter::SetSFormMatrix().
Get information about the matrix transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a matrix has been set via vtkNIFTIImageWriter::SetSFormMatrix().
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Get information about the matrix transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a matrix has been set via vtkNIFTIImageWriter::SetSFormMatrix().
Get information about the matrix transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a matrix has been set via vtkNIFTIImageWriter::SetSFormMatrix().
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Get information about the matrix transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a matrix has been set via vtkNIFTIImageWriter::SetSFormMatrix().
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Get information about the matrix transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a matrix has been set via vtkNIFTIImageWriter::SetSFormMatrix().
Get information about the matrix transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a matrix has been set via vtkNIFTIImageWriter::SetSFormMatrix().
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Get information about the matrix transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a matrix has been set via vtkNIFTIImageWriter::SetSFormMatrix().
Get information about the matrix transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a matrix has been set via vtkNIFTIImageWriter::SetSFormMatrix().
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Get information about the matrix transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a matrix has been set via vtkNIFTIImageWriter::SetSFormMatrix().
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Get information about the matrix transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a matrix has been set via vtkNIFTIImageWriter::SetSFormMatrix().
Get information about the matrix transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a matrix has been set via vtkNIFTIImageWriter::SetSFormMatrix().
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Get information about the matrix transformation. Note that the vtkNIFTIImageWriter ignores this part of the header if a matrix has been set via vtkNIFTIImageWriter::SetSFormMatrix().
void vtkNIFTIImageHeader::Initialize | ( | ) |
Initialize the header to default values.
void vtkNIFTIImageHeader::DeepCopy | ( | vtkNIFTIImageHeader * | o | ) |
Make a copy of the header.
void vtkNIFTIImageHeader::SetHeader | ( | const nifti_1_header * | hdr | ) |
Set the values from an existing nifti struct, or store the values in an existing nifti struct.
void vtkNIFTIImageHeader::GetHeader | ( | nifti_1_header * | hdr | ) |
Set the values from an existing nifti struct, or store the values in an existing nifti struct.
void vtkNIFTIImageHeader::SetHeader | ( | const nifti_2_header * | hdr | ) |
Set the values from an existing nifti struct, or store the values in an existing nifti struct.
void vtkNIFTIImageHeader::GetHeader | ( | nifti_2_header * | hdr | ) |
Set the values from an existing nifti struct, or store the values in an existing nifti struct.
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Definition at line 363 of file vtkNIFTIImageHeader.h.
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Definition at line 364 of file vtkNIFTIImageHeader.h.
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Definition at line 365 of file vtkNIFTIImageHeader.h.
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Definition at line 366 of file vtkNIFTIImageHeader.h.
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Definition at line 367 of file vtkNIFTIImageHeader.h.
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Definition at line 368 of file vtkNIFTIImageHeader.h.
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Definition at line 369 of file vtkNIFTIImageHeader.h.
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Definition at line 370 of file vtkNIFTIImageHeader.h.
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Definition at line 371 of file vtkNIFTIImageHeader.h.
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Definition at line 372 of file vtkNIFTIImageHeader.h.
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Definition at line 373 of file vtkNIFTIImageHeader.h.
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Definition at line 374 of file vtkNIFTIImageHeader.h.
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Definition at line 375 of file vtkNIFTIImageHeader.h.
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Definition at line 377 of file vtkNIFTIImageHeader.h.
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Definition at line 379 of file vtkNIFTIImageHeader.h.
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Definition at line 380 of file vtkNIFTIImageHeader.h.
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Definition at line 381 of file vtkNIFTIImageHeader.h.
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Definition at line 382 of file vtkNIFTIImageHeader.h.
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Definition at line 383 of file vtkNIFTIImageHeader.h.
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Definition at line 384 of file vtkNIFTIImageHeader.h.
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Definition at line 385 of file vtkNIFTIImageHeader.h.
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Definition at line 386 of file vtkNIFTIImageHeader.h.
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Definition at line 387 of file vtkNIFTIImageHeader.h.
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Definition at line 388 of file vtkNIFTIImageHeader.h.
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Definition at line 389 of file vtkNIFTIImageHeader.h.
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Definition at line 390 of file vtkNIFTIImageHeader.h.
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Definition at line 391 of file vtkNIFTIImageHeader.h.
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Definition at line 392 of file vtkNIFTIImageHeader.h.
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Definition at line 393 of file vtkNIFTIImageHeader.h.
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Definition at line 394 of file vtkNIFTIImageHeader.h.
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Definition at line 395 of file vtkNIFTIImageHeader.h.
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Definition at line 396 of file vtkNIFTIImageHeader.h.
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Definition at line 397 of file vtkNIFTIImageHeader.h.