class for reading PIO (Parallel Input Output) files in HDF5 format More...

#include <PIODataHDF5.h>

Inheritance diagram for PIO_DATA_HDF5:

Collaboration diagram for PIO_DATA_HDF5:

Public Member Functions
	PIO_DATA_HDF5 (const char *piofile)

	~PIO_DATA_HDF5 () override

bool	set_scalar_field (std::valarray< int > &, const char *) override

bool	set_scalar_field (std::valarray< int64_t > &, const char *) override

bool	set_scalar_field (std::valarray< double > &, const char *) override

bool	set_vector_field (std::valarray< std::valarray< double > > &, const char *) override

bool	read_dataset (std::valarray< double > &, const char *, int index)

bool	read_dataset (std::valarray< std::string > &, const char *, int index)

bool	has_scalar (const char *)

bool	has_scalar (const char *, int &)

bool	has_vector (const char *)

bool	has_field (const char *) override

bool	good_read () override

int	get_pio_num () const override

int	get_num_components (const char *) const override

int	get_num_materials () const override

int64_t	get_num_cells () override

int	get_cycle () override

double	get_simtime () override

int	get_dimension () override

bool	get_gridsize (std::valarray< int > &) override

bool	get_gridscale (std::valarray< double > &) override

bool	get_gridorigin (std::valarray< double > &) override

std::string	get_eap_version () override

std::string	get_username () override

std::string	get_problemname () override

bool	get_material_names (std::valarray< std::string > &) override

bool	get_tracer_variable_names (std::valarray< std::string > &) override

PIO_FIELD *	get_pio_field () const override

bool	reconstruct_chunk_field (int64_t numcell, std::valarray< double > &va, const char prefix, const char var, int materialId) override

Public Member Functions inherited from PIO_DATA
	PIO_DATA ()

virtual	~PIO_DATA ()=0

virtual bool	good_read ()=0

virtual bool	set_scalar_field (std::valarray< int > &, const char *)=0

virtual bool	set_scalar_field (std::valarray< int64_t > &, const char *)=0

virtual bool	set_scalar_field (std::valarray< double > &, const char *)=0

virtual bool	set_vector_field (std::valarray< std::valarray< double > > &, const char *)=0

virtual int	get_pio_num () const =0

virtual PIO_FIELD *	get_pio_field () const =0

virtual int	get_num_components (const char *) const =0

virtual int	get_num_materials () const =0

virtual int64_t	get_num_cells ()=0

virtual int	get_cycle ()=0

virtual double	get_simtime ()=0

virtual int	get_dimension ()=0

virtual bool	get_gridsize (std::valarray< int > &)=0

virtual bool	get_gridscale (std::valarray< double > &)=0

virtual bool	get_gridorigin (std::valarray< double > &)=0

virtual std::string	get_eap_version ()=0

virtual std::string	get_username ()=0

virtual std::string	get_problemname ()=0

virtual bool	get_material_names (std::valarray< std::string > &)=0

virtual bool	get_tracer_variable_names (std::valarray< std::string > &)=0

virtual bool	has_field (const char *)=0

virtual bool	reconstruct_chunk_field (int64_t numcell, std::valarray< double > &va, const char prefix, const char var, int materialId)=0

Public Attributes
std::valarray< int >	cell_active

bool	cell_active_loaded

Public Attributes inherited from PIO_DATA
VAR_MAP	VarMMap

Detailed Description

class for reading PIO (Parallel Input Output) files in HDF5 format

This class reads in dump files generated from xRage, a LANL physics code. The PIO (Parallel Input Output) library is used to create the dump files, and the dump files are written in HDF5 format.

This class represents one dump file.

The HDF5 format has all datasets in the root group. Each dataset represents a field in the pio format. Dataset names are in the form of [name]..[index].

For scalar fields, index will be either 0 or -1, with -1 indicating that the field was a derived field requested in the input deck.

For vector fields, each component of the vector is separated into its own dataset, with the index value beginning at 1, and incremented for each component. For example, the vector field cell_center is composed of the datasets "cell_center..1", "cell_center..2", and "cell_center..3".

Thanks:: Developed by Boonthanome Nouanesengsy at Los Alamos National Laboratory

Definition at line 47 of file PIODataHDF5.h.

Constructor & Destructor Documentation

◆ PIO_DATA_HDF5()

PIO_DATA_HDF5::PIO_DATA_HDF5 ( const char * piofile )

◆ ~PIO_DATA_HDF5()

PIO_DATA_HDF5::~PIO_DATA_HDF5 ( )

override

Member Function Documentation

◆ set_scalar_field() [1/3]

bool PIO_DATA_HDF5::set_scalar_field	(	std::valarray< int > &	,
		const char *
	)

overridevirtual

Implements PIO_DATA.

◆ set_scalar_field() [2/3]

bool PIO_DATA_HDF5::set_scalar_field	(	std::valarray< int64_t > &	,
		const char *
	)

overridevirtual

Implements PIO_DATA.

◆ set_scalar_field() [3/3]

bool PIO_DATA_HDF5::set_scalar_field	(	std::valarray< double > &	,
		const char *
	)

overridevirtual

Implements PIO_DATA.

◆ set_vector_field()

bool PIO_DATA_HDF5::set_vector_field	(	std::valarray< std::valarray< double > > &	,
		const char *
	)

overridevirtual

Implements PIO_DATA.

◆ read_dataset() [1/2]

bool PIO_DATA_HDF5::read_dataset	(	std::valarray< double > &	,
		const char *	,
		int	index
	)

◆ read_dataset() [2/2]

bool PIO_DATA_HDF5::read_dataset	(	std::valarray< std::string > &	,
		const char *	,
		int	index
	)

◆ has_scalar() [1/2]

bool PIO_DATA_HDF5::has_scalar ( const char * )

◆ has_scalar() [2/2]

bool PIO_DATA_HDF5::has_scalar	(	const char *	,
		int &
	)

◆ has_vector()

bool PIO_DATA_HDF5::has_vector ( const char * )

◆ has_field()

bool PIO_DATA_HDF5::has_field ( const char * )

overridevirtual

Implements PIO_DATA.

◆ good_read()

bool PIO_DATA_HDF5::good_read ( )

overridevirtual

Implements PIO_DATA.

◆ get_pio_num()

int PIO_DATA_HDF5::get_pio_num ( ) const

overridevirtual

Implements PIO_DATA.

◆ get_num_components()

int PIO_DATA_HDF5::get_num_components ( const char * ) const

overridevirtual

Implements PIO_DATA.

◆ get_num_materials()

int PIO_DATA_HDF5::get_num_materials ( ) const

overridevirtual

Implements PIO_DATA.

◆ get_num_cells()

int64_t PIO_DATA_HDF5::get_num_cells ( )

overridevirtual

Implements PIO_DATA.

◆ get_cycle()

int PIO_DATA_HDF5::get_cycle ( )

overridevirtual

Implements PIO_DATA.

◆ get_simtime()

double PIO_DATA_HDF5::get_simtime ( )

overridevirtual

Implements PIO_DATA.

◆ get_dimension()

int PIO_DATA_HDF5::get_dimension ( )

overridevirtual

Implements PIO_DATA.

◆ get_gridsize()

bool PIO_DATA_HDF5::get_gridsize ( std::valarray< int > & )

overridevirtual

Implements PIO_DATA.

◆ get_gridscale()

bool PIO_DATA_HDF5::get_gridscale ( std::valarray< double > & )

overridevirtual

Implements PIO_DATA.

◆ get_gridorigin()

bool PIO_DATA_HDF5::get_gridorigin ( std::valarray< double > & )

overridevirtual

Implements PIO_DATA.

◆ get_eap_version()

std::string PIO_DATA_HDF5::get_eap_version ( )

overridevirtual

Implements PIO_DATA.

◆ get_username()

std::string PIO_DATA_HDF5::get_username ( )

overridevirtual

Implements PIO_DATA.

◆ get_problemname()

std::string PIO_DATA_HDF5::get_problemname ( )

overridevirtual

Implements PIO_DATA.

◆ get_material_names()

bool PIO_DATA_HDF5::get_material_names ( std::valarray< std::string > & )

overridevirtual

Implements PIO_DATA.

◆ get_tracer_variable_names()

bool PIO_DATA_HDF5::get_tracer_variable_names ( std::valarray< std::string > & )

overridevirtual

Implements PIO_DATA.

◆ get_pio_field()

PIO_FIELD * PIO_DATA_HDF5::get_pio_field ( ) const

overridevirtual

Implements PIO_DATA.

◆ reconstruct_chunk_field()

bool PIO_DATA_HDF5::reconstruct_chunk_field	(	int64_t	numcell,
		std::valarray< double > &	va,
		const char *	prefix,
		const char *	var,
		int	materialId
	)

overridevirtual

Implements PIO_DATA.

Member Data Documentation

◆ cell_active

std::valarray<int> PIO_DATA_HDF5::cell_active

Definition at line 89 of file PIODataHDF5.h.

◆ cell_active_loaded

bool PIO_DATA_HDF5::cell_active_loaded

Definition at line 90 of file PIODataHDF5.h.

The documentation for this class was generated from the following file:

IO/PIO/PIODataHDF5.h

Public Member Functions

Public Attributes

Detailed Description

Constructor & Destructor Documentation

◆ PIO_DATA_HDF5()

◆ ~PIO_DATA_HDF5()

Member Function Documentation

◆ set_scalar_field() [1/3]

◆ set_scalar_field() [2/3]

◆ set_scalar_field() [3/3]

◆ set_vector_field()

◆ read_dataset() [1/2]

◆ read_dataset() [2/2]

◆ has_scalar() [1/2]

◆ has_scalar() [2/2]

◆ has_vector()

◆ has_field()

◆ good_read()

◆ get_pio_num()

◆ get_num_components()

◆ get_num_materials()

◆ get_num_cells()

◆ get_cycle()

◆ get_simtime()

◆ get_dimension()

◆ get_gridsize()

◆ get_gridscale()

◆ get_gridorigin()

◆ get_eap_version()

◆ get_username()

◆ get_problemname()

◆ get_material_names()

◆ get_tracer_variable_names()

◆ get_pio_field()

◆ reconstruct_chunk_field()

Member Data Documentation

◆ cell_active

◆ cell_active_loaded