vtkCGNSReaderInternal.h

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// SPDX-FileCopyrightText: Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
// SPDX-FileCopyrightText: Copyright 2013-2014 Mickael Philit
// SPDX-License-Identifier: BSD-3-Clause
#ifndef vtkCGNSReaderInternal_h
#define vtkCGNSReaderInternal_h
 
#include <iostream>
#include <map>
#include <string.h> // for inline strcmp
#include <string>
#include <vector>
 
#include "vtkCGNSReader.h"
#include "vtkDataArraySelection.h"
#include "vtkIdTypeArray.h"
#include "vtkMultiProcessController.h"
#include "vtkNew.h"
#include "vtkPoints.h"
 
// .clang-format off
#include "vtk_cgns.h"
#include VTK_CGNS(cgnslib.h)
#include VTK_CGNS(cgns_io.h)
// .clang-format on
 
namespace CGNSRead
{
namespace detail
{
VTK_ABI_NAMESPACE_BEGIN
template <typename T>
struct is_double
{
  static const bool value = false;
};
 
template <>
struct is_double<double>
{
  static const bool value = true;
};
 
template <typename T>
struct is_float
{
  static const bool value = false;
};
 
template <>
struct is_float<float>
{
  static const bool value = true;
};
VTK_ABI_NAMESPACE_END
}
 
namespace detail
{
VTK_ABI_NAMESPACE_BEGIN
template <typename T>
constexpr const char* cgns_type_name() noexcept
{
  return "MT";
}
 
template <>
constexpr const char* cgns_type_name<float>() noexcept
{
  return "R4";
}
 
template <>
constexpr const char* cgns_type_name<double>() noexcept
{
  return "R8";
}
 
template <>
constexpr const char* cgns_type_name<vtkTypeInt32>() noexcept
{
  return "I4";
}
 
template <>
constexpr const char* cgns_type_name<vtkTypeInt64>() noexcept
{
  return "I8";
}
VTK_ABI_NAMESPACE_END
}
 
VTK_ABI_NAMESPACE_BEGIN
typedef char char_33[33];
 
//------------------------------------------------------------------------------
// Cell type to cell dimension
const std::map<CGNS_ENUMT(ElementType_t), int> CellDimensions = {
  { CGNS_ENUMV(ElementTypeUserDefined), -1 }, { CGNS_ENUMV(ElementTypeNull), -1 },
  { CGNS_ENUMV(NODE), 0 }, { CGNS_ENUMV(BAR_2), 1 }, { CGNS_ENUMV(BAR_3), 1 },
  { CGNS_ENUMV(TRI_3), 2 }, { CGNS_ENUMV(TRI_6), 2 }, { CGNS_ENUMV(QUAD_4), 2 },
  { CGNS_ENUMV(QUAD_8), 2 }, { CGNS_ENUMV(QUAD_9), 2 }, { CGNS_ENUMV(TETRA_4), 3 },
  { CGNS_ENUMV(TETRA_10), 3 }, { CGNS_ENUMV(PYRA_5), 3 }, { CGNS_ENUMV(PYRA_14), 3 },
  { CGNS_ENUMV(PENTA_6), 3 }, { CGNS_ENUMV(PENTA_15), 3 }, { CGNS_ENUMV(PENTA_18), 3 },
  { CGNS_ENUMV(HEXA_8), 3 }, { CGNS_ENUMV(HEXA_20), 3 }, { CGNS_ENUMV(HEXA_27), 3 },
  { CGNS_ENUMV(MIXED), -1 }, { CGNS_ENUMV(PYRA_13), 3 }, { CGNS_ENUMV(NGON_n), 2 },
  { CGNS_ENUMV(NFACE_n), 3 }, { CGNS_ENUMV(BAR_4), 1 }, { CGNS_ENUMV(TRI_9), 2 },
  { CGNS_ENUMV(TRI_10), 2 }, { CGNS_ENUMV(QUAD_12), 2 }, { CGNS_ENUMV(QUAD_16), 2 },
  { CGNS_ENUMV(TETRA_16), 3 }, { CGNS_ENUMV(TETRA_20), 3 }, { CGNS_ENUMV(PYRA_21), 3 },
  { CGNS_ENUMV(PYRA_29), 3 }, { CGNS_ENUMV(PYRA_30), 3 }, { CGNS_ENUMV(PENTA_24), 3 },
  { CGNS_ENUMV(PENTA_38), 3 }, { CGNS_ENUMV(PENTA_40), 3 }, { CGNS_ENUMV(HEXA_32), 3 },
  { CGNS_ENUMV(HEXA_56), 3 }, { CGNS_ENUMV(HEXA_64), 3 }, { CGNS_ENUMV(BAR_5), 1 },
  { CGNS_ENUMV(TRI_12), 2 }, { CGNS_ENUMV(TRI_15), 2 }, { CGNS_ENUMV(QUAD_P4_16), 2 },
  { CGNS_ENUMV(QUAD_25), 2 }, { CGNS_ENUMV(TETRA_22), 3 }, { CGNS_ENUMV(TETRA_34), 3 },
  { CGNS_ENUMV(TETRA_35), 3 }, { CGNS_ENUMV(PYRA_P4_29), 3 }, { CGNS_ENUMV(PYRA_50), 3 },
  { CGNS_ENUMV(PYRA_55), 3 }, { CGNS_ENUMV(PENTA_33), 3 }, { CGNS_ENUMV(PENTA_66), 3 },
  { CGNS_ENUMV(PENTA_75), 3 }, { CGNS_ENUMV(HEXA_44), 3 }, { CGNS_ENUMV(HEXA_98), 3 },
  { CGNS_ENUMV(HEXA_125), 3 }
};
 
//------------------------------------------------------------------------------
class vtkCGNSArraySelection : public std::map<std::string, bool>
{
public:
  void Merge(const vtkCGNSArraySelection& other)
  {
    vtkCGNSArraySelection::const_iterator iter = other.begin();
    for (; iter != other.end(); ++iter)
    {
      (*this)[iter->first] = iter->second;
    }
  }
 
  void AddArray(const char* name, bool status = true) { (*this)[name] = status; }
 
  bool ArrayIsEnabled(const char* name)
  {
    vtkCGNSArraySelection::iterator iter = this->find(name);
    if (iter != this->end())
    {
      return iter->second;
    }
 
    // don't know anything about this array, enable it by default.
    return true;
  }
 
  bool HasArray(const char* name)
  {
    vtkCGNSArraySelection::iterator iter = this->find(name);
    return (iter != this->end());
  }
 
  int GetArraySetting(const char* name) { return this->ArrayIsEnabled(name) ? 1 : 0; }
 
  void SetArrayStatus(const char* name, bool status) { this->AddArray(name, status); }
 
  const char* GetArrayName(int index)
  {
    int cc = 0;
    for (vtkCGNSArraySelection::iterator iter = this->begin(); iter != this->end(); ++iter)
    {
 
      if (cc == index)
      {
        return iter->first.c_str();
      }
      cc++;
    }
    return nullptr;
  }
 
  int GetNumberOfArrays() { return static_cast<int>(this->size()); }
};
 
//------------------------------------------------------------------------------
typedef struct
{
  int cnt; // 0  1 or 3
  int pos; // variable position in zone
  int xyzIndex;
  int owner_pos;
  CGNS_ENUMT(DataType_t) dt;
  char_33 name;
} Variable;
 
//------------------------------------------------------------------------------
typedef struct
{
  int xyzIndex;
  bool isComponent;
  CGNS_ENUMT(DataType_t) dt;
  char_33 name;
} CGNSVariable;
 
//------------------------------------------------------------------------------
typedef struct
{
  int numComp;
  char_33 name;
  int xyzIndex[3];
} CGNSVector;
 
//------------------------------------------------------------------------------
typedef struct
{
  bool isVector;
  int xyzIndex;
  char_33 name;
} VTKVariable;
 
//------------------------------------------------------------------------------
class ZoneBCInformation
{
public:
  char_33 name;
  std::string family;
  ZoneBCInformation()
    : family(32, '\0')
  {
    this->name[0] = '\0';
  }
};
 
//------------------------------------------------------------------------------
class ZoneInformation
{
public:
  char_33 name;
  std::string family;
  std::vector<CGNSRead::ZoneBCInformation> bcs;
  ZoneInformation()
    : family(32, '\0')
  {
    this->name[0] = '\0';
  }
};
 
//------------------------------------------------------------------------------
class FamilyInformation
{
public:
  std::string name;
  bool isBC;
};
 
//------------------------------------------------------------------------------
class BaseInformation
{
public:
  char_33 name;
 
  int32_t cellDim;
  int32_t physicalDim;
  //
  int baseNumber;
 
  std::vector<int32_t> steps;
  std::vector<double> times;
 
  // For unsteady meshes :
  // if useGridPointers == True:
  //    loadGridPointers for first zone
  //    and assume every zone use the same
  //    notation
  // else :
  //    assume only one grid is stored
  //    only first grid is read
  //
  // For unsteady flow
  // if useFlowPointers == True :
  //    same behavior as GridPointers
  // else if ( nstates > 1 ) :
  //    assume flow_solution are sorted
  //    to keep VisIt like behavior
  // else :
  //    only first solution is read
  //
 
  bool useGridPointers; // for unsteady mesh
  bool useFlowPointers; // for unsteady flow
 
  std::vector<CGNSRead::FamilyInformation> family;
  std::map<std::string, double> referenceState;
 
  std::vector<CGNSRead::ZoneInformation> zones;
 
  int nzones;
 
  // std::vector<CGNSRead::zone> zone;
  vtkCGNSArraySelection PointDataArraySelection;
  vtkCGNSArraySelection CellDataArraySelection;
  vtkCGNSArraySelection FaceDataArraySelection;
};
 
//==============================================================================
 
 
bool ReadBase(vtkCGNSReader* reader, const BaseInformation& baseInfo);
bool ReadGridForZone(
  vtkCGNSReader* reader, const BaseInformation& baseInfo, const ZoneInformation& zoneInfo);
bool ReadPatchesForBase(vtkCGNSReader* reader, const BaseInformation&);
bool ReadSurfacesForBase(vtkCGNSReader* reader, const BaseInformation&);
bool ReadPatch(vtkCGNSReader* reader, const BaseInformation&, const ZoneInformation& zoneInfo,
  const std::string& patchFamilyname);
 
//==============================================================================
class vtkCGNSMetaData
{
public:
  bool Parse(const char* cgnsFileName);
 
  int GetNumberOfBaseNodes() { return static_cast<int>(this->baseList.size()); }
 
  const CGNSRead::BaseInformation& GetBase(int numBase) { return this->baseList[numBase]; }
 
  std::vector<double>& GetTimes() { return this->GlobalTime; }
 
  void PrintSelf(std::ostream& os);
 
  void Broadcast(vtkMultiProcessController* controller, int rank);
 
 
  vtkCGNSMetaData() = default;
  ~vtkCGNSMetaData() = default;
 
private:
  vtkCGNSMetaData(const vtkCGNSMetaData&) = delete;
  void operator=(const vtkCGNSMetaData&) = delete;
 
  std::vector<CGNSRead::BaseInformation> baseList;
  std::string LastReadFilename;
  // Not very elegant :
  std::vector<double> GlobalTime;
};
 
//------------------------------------------------------------------------------
// compare name return true if name1 == name2
inline bool compareName(const char_33 nameOne, const char_33 nameTwo)
{
  return (strncmp(nameOne, nameTwo, 32) == 0);
}
 
//------------------------------------------------------------------------------
// remove trailing whitespaces
inline void removeTrailingWhiteSpaces(char_33 name)
{
  char* end = name + strlen(name) - 1;
  while (end >= name && isspace(*end))
  {
    --end;
  }
  ++end;
  assert(end >= name && end < name + 33);
  *end = '\0';
}
 
//------------------------------------------------------------------------------
// get vector from name
inline std::vector<CGNSVector>::iterator getVectorFromName(
  std::vector<CGNSVector>& vectorList, const char_33 name)
{
  for (std::vector<CGNSVector>::iterator iter = vectorList.begin(); iter != vectorList.end();
       ++iter)
  {
    if (strncmp(iter->name, name, 31) == 0)
    {
      return iter;
    }
  }
  return vectorList.end();
}
 
//------------------------------------------------------------------------------
inline bool isACGNSVariable(const std::vector<CGNSVariable>& varList, const char_33 name)
{
  for (std::vector<CGNSVariable>::const_iterator iter = varList.begin(); iter != varList.end();
       ++iter)
  {
    if (strncmp(iter->name, name, 32) == 0)
    {
      return true;
    }
  }
  return false;
}
 
//------------------------------------------------------------------------------
void fillVectorsFromVars(std::vector<CGNSRead::CGNSVariable>& vars,
  std::vector<CGNSRead::CGNSVector>& vectors, int physicalDim);
//------------------------------------------------------------------------------
int setUpRind(int cgioNum, double rindId, int* rind);
//------------------------------------------------------------------------------
int getFirstNodeId(
  int cgioNum, double parentId, const char* label, double* id, const char* name = nullptr);
//------------------------------------------------------------------------------
int get_section_connectivity(int cgioNum, double cgioSectionId, int dim, const cgsize_t* srcStart,
  const cgsize_t* srcEnd, const cgsize_t* srcStride, const cgsize_t* memStart,
  const cgsize_t* memEnd, const cgsize_t* memStride, const cgsize_t* memDim,
  vtkIdType* localElements);
//------------------------------------------------------------------------------
int get_section_start_offset(int cgioNum, double cgioSectionId, int dim, const cgsize_t* srcStart,
  const cgsize_t* srcEnd, const cgsize_t* srcStride, const cgsize_t* memStart,
  const cgsize_t* memEnd, const cgsize_t* memStride, const cgsize_t* memDim,
  vtkIdType* localElementsIdx);
//------------------------------------------------------------------------------
int get_section_parent_elements(int cgioNum, double cgioSectionId, int dim,
  const cgsize_t* srcStart, const cgsize_t* srcEnd, const cgsize_t* srcStride,
  const cgsize_t* memStart, const cgsize_t* memEnd, const cgsize_t* memStride,
  const cgsize_t* memDim, vtkIdType* localElementsIdx);
//------------------------------------------------------------------------------
int GetVTKElemType(
  CGNS_ENUMT(ElementType_t) elemType, bool& higherOrderWarning, bool& cgnsOrderFlag);
//------------------------------------------------------------------------------
void CGNS2VTKorder(vtkIdType size, const int* cells_types, vtkIdType* elements);
//------------------------------------------------------------------------------
void ReorderMonoCellPointsCGNS2VTK(
  vtkIdType size, int cell_type, vtkIdType numPointsPerCell, vtkIdType* elements);
//------------------------------------------------------------------------------
template <typename T, typename Y>
int get_XYZ_mesh(int cgioNum, const std::vector<double>& gridChildId,
  const std::size_t& nCoordsArray, int cellDim, vtkIdType nPts, const cgsize_t* srcStart,
  const cgsize_t* srcEnd, const cgsize_t* srcStride, const cgsize_t* memStart,
  const cgsize_t* memEnd, const cgsize_t* memStride, const cgsize_t* memDims, vtkPoints* points)
{
  T* coords = static_cast<T*>(points->GetVoidPointer(0));
  T* currentCoord = static_cast<T*>(&(coords[0]));
 
  CGNSRead::char_33 coordName;
  std::size_t len;
  bool sameType = true;
  double coordId;
 
  memset(coords, 0, 3 * nPts * sizeof(T));
 
  for (std::size_t c = 1; c <= nCoordsArray; ++c)
  {
    // Read CoordName
    if (cgio_get_name(cgioNum, gridChildId[c - 1], coordName) != CG_OK)
    {
      char message[81];
      cgio_error_message(message);
      std::cerr << "get_XYZ_mesh : cgio_get_name :" << message;
    }
 
    // Read node data type
    CGNSRead::char_33 dataType;
    if (cgio_get_data_type(cgioNum, gridChildId[c - 1], dataType))
    {
      continue;
    }
 
    if (strcmp(dataType, "R8") == 0)
    {
      const bool doubleType = detail::is_double<T>::value;
      sameType = doubleType;
    }
    else if (strcmp(dataType, "R4") == 0)
    {
      const bool floatType = detail::is_float<T>::value;
      sameType = floatType;
    }
    else
    {
      std::cerr << "Invalid datatype for GridCoordinates\n";
      continue;
    }
 
    // Determine direction X,Y,Z
    len = strlen(coordName) - 1;
    switch (coordName[len])
    {
      case 'X':
        currentCoord = static_cast<T*>(&(coords[0]));
        break;
      case 'Y':
        currentCoord = static_cast<T*>(&(coords[1]));
        break;
      case 'Z':
        currentCoord = static_cast<T*>(&(coords[2]));
        break;
    }
 
    coordId = gridChildId[c - 1];
 
    // quick transfer of data if same data types
    if (sameType == true)
    {
      constexpr const char* dtNameT = detail::cgns_type_name<T>();
      if (cgio_read_data_type(cgioNum, coordId, srcStart, srcEnd, srcStride, dtNameT, cellDim,
            memEnd, memStart, memEnd, memStride, (void*)currentCoord))
      {
        char message[81];
        cgio_error_message(message);
        std::cerr << "cgio_read_data_type :" << message;
      }
    }
    else
    {
      constexpr const char* dtNameY = detail::cgns_type_name<Y>();
      Y* dataArray = nullptr;
      const cgsize_t memNoStride[3] = { 1, 1, 1 };
 
      // need to read into temp array to convert data
      dataArray = new Y[nPts];
      if (dataArray == nullptr)
      {
        std::cerr << "Error allocating buffer array\n";
        break;
      }
      if (cgio_read_data_type(cgioNum, coordId, srcStart, srcEnd, srcStride, dtNameY, cellDim,
            memDims, memStart, memDims, memNoStride, (void*)dataArray))
      {
        delete[] dataArray;
        char message[81];
        cgio_error_message(message);
        std::cerr << "Buffer array cgio_read_data_type :" << message;
        break;
      }
      for (vtkIdType ii = 0; ii < nPts; ++ii)
      {
        currentCoord[memStride[0] * ii] = static_cast<T>(dataArray[ii]);
      }
      delete[] dataArray;
    }
  }
  return 0;
}
VTK_ABI_NAMESPACE_END
}
 
#endif // vtkCGNSReaderInternal_h
// VTK-HeaderTest-Exclude: vtkCGNSReaderInternal.h