vtkMoleculeMapper Class Reference

Mapper that draws vtkMolecule objects. More...

#include <vtkMoleculeMapper.h>

Inheritance diagram for vtkMoleculeMapper:

Collaboration diagram for vtkMoleculeMapper:

Public Types
enum	{ CovalentRadius = 0, VDWRadius, UnitRadius }
enum	{ SingleColor = 0, DiscreteByAtom }
typedef vtkMapper	Superclass
Public Types inherited from vtkMapper
typedef vtkAbstractMapper3D	Superclass
Public Types inherited from vtkAbstractMapper3D
typedef vtkAbstractMapper	Superclass
Public Types inherited from vtkAbstractMapper
typedef vtkAlgorithm	Superclass
Public Types inherited from vtkAlgorithm
typedef vtkObject	Superclass
enum	DesiredOutputPrecision { SINGLE_PRECISION, DOUBLE_PRECISION, DEFAULT_PRECISION }
Public Types inherited from vtkObject
typedef vtkObjectBase	Superclass

Public Member Functions
virtual int	IsA (const char *type)
vtkMoleculeMapper *	NewInstance () const
void	PrintSelf (ostream &os, vtkIndent indent)
void	UseBallAndStickSettings ()
void	UseVDWSpheresSettings ()
void	UseLiquoriceStickSettings ()
void	UseFastSettings ()
void	SetInputData (vtkMolecule *in)
vtkMolecule *	GetInput ()
virtual bool	GetRenderAtoms ()
virtual void	SetRenderAtoms (bool)
virtual void	RenderAtomsOn ()
virtual void	RenderAtomsOff ()
virtual bool	GetRenderBonds ()
virtual void	SetRenderBonds (bool)
virtual void	RenderBondsOn ()
virtual void	RenderBondsOff ()
virtual int	GetAtomicRadiusType ()
virtual void	SetAtomicRadiusType (int)
const char *	GetAtomicRadiusTypeAsString ()
void	SetAtomicRadiusTypeToCovalentRadius ()
void	SetAtomicRadiusTypeToVDWRadius ()
void	SetAtomicRadiusTypeToUnitRadius ()
virtual float	GetAtomicRadiusScaleFactor ()
virtual void	SetAtomicRadiusScaleFactor (float)
virtual bool	GetUseMultiCylindersForBonds ()
virtual void	SetUseMultiCylindersForBonds (bool)
virtual void	UseMultiCylindersForBondsOn ()
virtual void	UseMultiCylindersForBondsOff ()
virtual int	GetBondColorMode ()
virtual void	SetBondColorMode (int)
const char *	GetBondColorModeAsString ()
void	SetBondColorModeToSingleColor ()
void	SetBondColorModeToDiscreteByAtom ()
virtual unsigned char *	GetBondColor ()
virtual void	GetBondColor (unsigned char &, unsigned char &, unsigned char &)
virtual void	GetBondColor (unsigned char[3])
virtual void	SetBondColor (unsigned char, unsigned char, unsigned char)
virtual void	SetBondColor (unsigned char[3])
virtual float	GetBondRadius ()
virtual void	SetBondRadius (float)
virtual void	GetSelectedAtomsAndBonds (vtkSelection *selection, vtkIdTypeArray *atomIds, vtkIdTypeArray *bondIds)
virtual void	GetSelectedAtoms (vtkSelection *selection, vtkIdTypeArray *atomIds)
virtual void	GetSelectedBonds (vtkSelection *selection, vtkIdTypeArray *bondIds)
virtual void	Render (vtkRenderer *, vtkActor *)
virtual void	ReleaseGraphicsResources (vtkWindow *)
double *	GetBounds ()
void	GetBounds (double bounds[6])
virtual int	FillInputPortInformation (int port, vtkInformation *info)
virtual bool	GetSupportsSelection ()
Public Member Functions inherited from vtkMapper
vtkMapper *	NewInstance () const
void	PrintSelf (ostream &os, vtkIndent indent)
void	ShallowCopy (vtkAbstractMapper *m)
unsigned long	GetMTime ()
virtual void	CreateDefaultLookupTable ()
const char *	GetColorModeAsString ()
virtual void	SetScalarMode (int)
virtual int	GetScalarMode ()
void	SetScalarModeToDefault ()
void	SetScalarModeToUsePointData ()
void	SetScalarModeToUseCellData ()
void	SetScalarModeToUsePointFieldData ()
void	SetScalarModeToUseCellFieldData ()
void	SetScalarModeToUseFieldData ()
virtual void	SetFieldDataTupleId (vtkIdType)
virtual vtkIdType	GetFieldDataTupleId ()
const char *	GetScalarModeAsString ()
const char *	GetScalarMaterialModeAsString ()
virtual int	CanUseTextureMapForColoring (vtkDataObject *input)
void	SetLookupTable (vtkScalarsToColors *lut)
vtkScalarsToColors *	GetLookupTable ()
virtual void	SetScalarVisibility (int)
virtual int	GetScalarVisibility ()
virtual void	ScalarVisibilityOn ()
virtual void	ScalarVisibilityOff ()
virtual void	SetStatic (int)
virtual int	GetStatic ()
virtual void	StaticOn ()
virtual void	StaticOff ()
virtual void	SetColorMode (int)
virtual int	GetColorMode ()
void	SetColorModeToDefault ()
void	SetColorModeToMapScalars ()
void	SetColorModeToDirectScalars ()
virtual void	SetInterpolateScalarsBeforeMapping (int)
virtual int	GetInterpolateScalarsBeforeMapping ()
virtual void	InterpolateScalarsBeforeMappingOn ()
virtual void	InterpolateScalarsBeforeMappingOff ()
virtual void	SetUseLookupTableScalarRange (int)
virtual int	GetUseLookupTableScalarRange ()
virtual void	UseLookupTableScalarRangeOn ()
virtual void	UseLookupTableScalarRangeOff ()
virtual void	SetScalarRange (double, double)
void	SetScalarRange (double[2])
virtual double *	GetScalarRange ()
virtual void	GetScalarRange (double data[2])
virtual void	SetImmediateModeRendering (int)
virtual int	GetImmediateModeRendering ()
virtual void	ImmediateModeRenderingOn ()
virtual void	ImmediateModeRenderingOff ()
virtual int	GetForceCompileOnly ()
void	SetForceCompileOnly (int value)
void	SelectColorArray (int arrayNum)
void	SelectColorArray (const char *arrayName)
void	ColorByArrayComponent (int arrayNum, int component)
void	ColorByArrayComponent (const char *arrayName, int component)
char *	GetArrayName ()
int	GetArrayId ()
int	GetArrayAccessMode ()
int	GetArrayComponent ()
void	SetRenderTime (double time)
virtual double	GetRenderTime ()
vtkDataSet *	GetInput ()
vtkDataSet *	GetInputAsDataSet ()
virtual vtkUnsignedCharArray *	MapScalars (double alpha)
virtual vtkUnsignedCharArray *	MapScalars (vtkDataSet *input, double alpha)
virtual void	SetScalarMaterialMode (int)
virtual int	GetScalarMaterialMode ()
void	SetScalarMaterialModeToDefault ()
void	SetScalarMaterialModeToAmbient ()
void	SetScalarMaterialModeToDiffuse ()
void	SetScalarMaterialModeToAmbientAndDiffuse ()
virtual bool	GetIsOpaque ()
Public Member Functions inherited from vtkAbstractMapper3D
vtkAbstractMapper3D *	NewInstance () const
double	GetLength ()
int	GetNumberOfClippingPlanes ()
double *	GetCenter ()
void	GetCenter (double center[3])
virtual int	IsARayCastMapper ()
virtual int	IsARenderIntoImageMapper ()
void	GetClippingPlaneInDataCoords (vtkMatrix4x4 *propMatrix, int i, double planeEquation[4])
Public Member Functions inherited from vtkAbstractMapper
vtkAbstractMapper *	NewInstance () const
void	SetClippingPlanes (vtkPlanes *planes)
void	ShallowCopy (vtkAbstractMapper *m)
virtual double	GetTimeToDraw ()
void	AddClippingPlane (vtkPlane *plane)
void	RemoveClippingPlane (vtkPlane *plane)
void	RemoveAllClippingPlanes ()
virtual void	SetClippingPlanes (vtkPlaneCollection *)
virtual vtkPlaneCollection *	GetClippingPlanes ()
Public Member Functions inherited from vtkAlgorithm
vtkAlgorithm *	NewInstance () const
int	HasExecutive ()
vtkExecutive *	GetExecutive ()
virtual void	SetExecutive (vtkExecutive *executive)
virtual int	ModifyRequest (vtkInformation *request, int when)
vtkInformation *	GetInputPortInformation (int port)
vtkInformation *	GetOutputPortInformation (int port)
int	GetNumberOfInputPorts ()
int	GetNumberOfOutputPorts ()
void	UpdateProgress (double amount)
vtkInformation *	GetInputArrayInformation (int idx)
void	RemoveAllInputs ()
vtkDataObject *	GetOutputDataObject (int port)
virtual void	RemoveInputConnection (int port, vtkAlgorithmOutput *input)
virtual void	RemoveInputConnection (int port, int idx)
virtual void	RemoveAllInputConnections (int port)
int	GetNumberOfInputConnections (int port)
int	GetTotalNumberOfInputConnections ()
vtkAlgorithmOutput *	GetInputConnection (int port, int index)
vtkAlgorithm *	GetInputAlgorithm (int port, int index, int &algPort)
vtkAlgorithm *	GetInputAlgorithm (int port, int index)
vtkExecutive *	GetInputExecutive (int port, int index)
vtkInformation *	GetInputInformation (int port, int index)
vtkInformation *	GetOutputInformation (int port)
virtual void	UpdateInformation ()
virtual void	UpdateDataObject ()
virtual void	PropagateUpdateExtent ()
virtual void	UpdateWholeExtent ()
void	ConvertTotalInputToPortConnection (int ind, int &port, int &conn)
int	SetUpdateExtentToWholeExtent (int port)
int	SetUpdateExtentToWholeExtent ()
void	SetUpdateExtent (int port, int extent[6])
virtual int	ProcessRequest (vtkInformation *request, vtkInformationVector **inInfo, vtkInformationVector *outInfo)
int	ProcessRequest (vtkInformation *request, vtkCollection *inInfo, vtkInformationVector *outInfo)
virtual int	ComputePipelineMTime (vtkInformation *request, vtkInformationVector **inInfoVec, vtkInformationVector *outInfoVec, int requestFromOutputPort, unsigned long *mtime)
virtual vtkInformation *	GetInformation ()
virtual void	SetInformation (vtkInformation *)
virtual void	Register (vtkObjectBase *o)
virtual void	UnRegister (vtkObjectBase *o)
virtual void	SetAbortExecute (int)
virtual int	GetAbortExecute ()
virtual void	AbortExecuteOn ()
virtual void	AbortExecuteOff ()
virtual void	SetProgress (double)
virtual double	GetProgress ()
void	SetProgressText (const char *ptext)
virtual char *	GetProgressText ()
virtual unsigned long	GetErrorCode ()
virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, const char *name)
virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, int fieldAttributeType)
virtual void	SetInputArrayToProcess (int idx, vtkInformation *info)
virtual void	SetInputArrayToProcess (int idx, int port, int connection, const char *fieldAssociation, const char *attributeTypeorName)
vtkDataObject *	GetInputDataObject (int port, int connection)
virtual void	SetInputConnection (int port, vtkAlgorithmOutput *input)
virtual void	SetInputConnection (vtkAlgorithmOutput *input)
virtual void	AddInputConnection (int port, vtkAlgorithmOutput *input)
virtual void	AddInputConnection (vtkAlgorithmOutput *input)
virtual void	SetInputDataObject (int port, vtkDataObject *data)
virtual void	SetInputDataObject (vtkDataObject *data)
virtual void	AddInputDataObject (int port, vtkDataObject *data)
virtual void	AddInputDataObject (vtkDataObject *data)
vtkAlgorithmOutput *	GetOutputPort (int index)
vtkAlgorithmOutput *	GetOutputPort ()
vtkAlgorithm *	GetInputAlgorithm ()
vtkExecutive *	GetInputExecutive ()
vtkInformation *	GetInputInformation ()
virtual void	Update (int port)
virtual void	Update ()
virtual void	SetReleaseDataFlag (int)
virtual int	GetReleaseDataFlag ()
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
int	UpdateExtentIsEmpty (vtkInformation *pinfo, vtkDataObject *output)
int	UpdateExtentIsEmpty (vtkInformation *pinfo, int extentType)
void	SetUpdateExtent (int port, int piece, int numPieces, int ghostLevel)
void	SetUpdateExtent (int piece, int numPieces, int ghostLevel)
void	SetUpdateExtent (int extent[6])
int *	GetUpdateExtent ()
int *	GetUpdateExtent (int port)
void	GetUpdateExtent (int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)
void	GetUpdateExtent (int port, int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)
void	GetUpdateExtent (int extent[6])
void	GetUpdateExtent (int port, int extent[6])
int	GetUpdatePiece ()
int	GetUpdatePiece (int port)
int	GetUpdateNumberOfPieces ()
int	GetUpdateNumberOfPieces (int port)
int	GetUpdateGhostLevel ()
int	GetUpdateGhostLevel (int port)
void	SetProgressObserver (vtkProgressObserver *)
virtual vtkProgressObserver *	GetProgressObserver ()
Public Member Functions inherited from vtkObject
vtkObject *	NewInstance () const
virtual void	DebugOn ()
virtual void	DebugOff ()
bool	GetDebug ()
void	SetDebug (bool debugFlag)
virtual void	Modified ()
unsigned long	AddObserver (unsigned long event, vtkCommand *, float priority=0.0f)
unsigned long	AddObserver (const char *event, vtkCommand *, float priority=0.0f)
vtkCommand *	GetCommand (unsigned long tag)
void	RemoveObserver (vtkCommand *)
void	RemoveObservers (unsigned long event, vtkCommand *)
void	RemoveObservers (const char *event, vtkCommand *)
int	HasObserver (unsigned long event, vtkCommand *)
int	HasObserver (const char *event, vtkCommand *)
void	RemoveObserver (unsigned long tag)
void	RemoveObservers (unsigned long event)
void	RemoveObservers (const char *event)
void	RemoveAllObservers ()
int	HasObserver (unsigned long event)
int	HasObserver (const char *event)
template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f)
template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f)
template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, bool(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f)
int	InvokeEvent (unsigned long event, void *callData)
int	InvokeEvent (const char *event, void *callData)
int	InvokeEvent (unsigned long event)
int	InvokeEvent (const char *event)
Public Member Functions inherited from vtkObjectBase
const char *	GetClassName () const
virtual void	Delete ()
virtual void	FastDelete ()
void	Print (ostream &os)
void	SetReferenceCount (int)
void	PrintRevisions (ostream &)
virtual void	PrintHeader (ostream &os, vtkIndent indent)
virtual void	PrintTrailer (ostream &os, vtkIndent indent)
int	GetReferenceCount ()

Static Public Member Functions
static vtkMoleculeMapper *	New ()
static int	IsTypeOf (const char *type)
static vtkMoleculeMapper *	SafeDownCast (vtkObjectBase *o)
Static Public Member Functions inherited from vtkMapper
static int	IsTypeOf (const char *type)
static vtkMapper *	SafeDownCast (vtkObjectBase *o)
static void	SetGlobalImmediateModeRendering (int val)
static void	GlobalImmediateModeRenderingOn ()
static void	GlobalImmediateModeRenderingOff ()
static int	GetGlobalImmediateModeRendering ()
static void	SetResolveCoincidentTopology (int val)
static int	GetResolveCoincidentTopology ()
static void	SetResolveCoincidentTopologyToDefault ()
static void	SetResolveCoincidentTopologyToOff ()
static void	SetResolveCoincidentTopologyToPolygonOffset ()
static void	SetResolveCoincidentTopologyToShiftZBuffer ()
static void	SetResolveCoincidentTopologyPolygonOffsetParameters (double factor, double units)
static void	GetResolveCoincidentTopologyPolygonOffsetParameters (double &factor, double &units)
static void	SetResolveCoincidentTopologyPolygonOffsetFaces (int faces)
static int	GetResolveCoincidentTopologyPolygonOffsetFaces ()
static void	SetResolveCoincidentTopologyZShift (double val)
static double	GetResolveCoincidentTopologyZShift ()
Static Public Member Functions inherited from vtkAbstractMapper3D
static int	IsTypeOf (const char *type)
static vtkAbstractMapper3D *	SafeDownCast (vtkObjectBase *o)
Static Public Member Functions inherited from vtkAbstractMapper
static int	IsTypeOf (const char *type)
static vtkAbstractMapper *	SafeDownCast (vtkObjectBase *o)
static vtkDataArray *	GetScalars (vtkDataSet *input, int scalarMode, int arrayAccessMode, int arrayId, const char *arrayName, int &cellFlag)
static vtkAbstractArray *	GetAbstractScalars (vtkDataSet *input, int scalarMode, int arrayAccessMode, int arrayId, const char *arrayName, int &cellFlag)
Static Public Member Functions inherited from vtkAlgorithm
static vtkAlgorithm *	New ()
static int	IsTypeOf (const char *type)
static vtkAlgorithm *	SafeDownCast (vtkObjectBase *o)
static vtkInformationIntegerKey *	INPUT_IS_OPTIONAL ()
static vtkInformationIntegerKey *	INPUT_IS_REPEATABLE ()
static vtkInformationInformationVectorKey *	INPUT_REQUIRED_FIELDS ()
static vtkInformationStringVectorKey *	INPUT_REQUIRED_DATA_TYPE ()
static vtkInformationInformationVectorKey *	INPUT_ARRAYS_TO_PROCESS ()
static vtkInformationIntegerKey *	INPUT_PORT ()
static vtkInformationIntegerKey *	INPUT_CONNECTION ()
static vtkInformationIntegerKey *	CAN_PRODUCE_SUB_EXTENT ()
static vtkInformationIntegerKey *	CAN_HANDLE_PIECE_REQUEST ()
static void	SetDefaultExecutivePrototype (vtkExecutive *proto)
Static Public Member Functions inherited from vtkObject
static int	IsTypeOf (const char *type)
static vtkObject *	SafeDownCast (vtkObjectBase *o)
static vtkObject *	New ()
static void	BreakOnError ()
static void	SetGlobalWarningDisplay (int val)
static void	GlobalWarningDisplayOn ()
static void	GlobalWarningDisplayOff ()
static int	GetGlobalWarningDisplay ()
Static Public Member Functions inherited from vtkObjectBase
static int	IsTypeOf (const char *name)
static vtkObjectBase *	New ()

Protected Member Functions
virtual vtkObjectBase *	NewInstanceInternal () const
	vtkMoleculeMapper ()
	~vtkMoleculeMapper ()
void	GlyphRender (vtkRenderer *ren, vtkActor *act)
Protected Member Functions inherited from vtkMapper
	vtkMapper ()
	~vtkMapper ()
void	MapScalarsToTexture (vtkAbstractArray *scalars, double alpha)
Protected Member Functions inherited from vtkAbstractMapper3D
	vtkAbstractMapper3D ()
	~vtkAbstractMapper3D ()
Protected Member Functions inherited from vtkAbstractMapper
	vtkAbstractMapper ()
	~vtkAbstractMapper ()
Protected Member Functions inherited from vtkAlgorithm
	vtkAlgorithm ()
	~vtkAlgorithm ()
virtual int	FillOutputPortInformation (int port, vtkInformation *info)
virtual void	SetNumberOfInputPorts (int n)
virtual void	SetNumberOfOutputPorts (int n)
int	InputPortIndexInRange (int index, const char *action)
int	OutputPortIndexInRange (int index, const char *action)
int	GetInputArrayAssociation (int idx, vtkInformationVector **inputVector)
virtual vtkExecutive *	CreateDefaultExecutive ()
virtual void	ReportReferences (vtkGarbageCollector *)
virtual void	SetNumberOfInputConnections (int port, int n)
int	GetInputArrayAssociation (int idx, int connection, vtkInformationVector **inputVector)
int	GetInputArrayAssociation (int idx, vtkDataObject *input)
vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector)
vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input)
vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input, int &association)
vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector)
vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input)
vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input, int &association)
vtkInformation *	GetInputArrayFieldInformation (int idx, vtkInformationVector **inputVector)
virtual void	SetNthInputConnection (int port, int index, vtkAlgorithmOutput *input)
void	SetInputDataInternal (int port, vtkDataObject *input)
void	AddInputDataInternal (int port, vtkDataObject *input)
virtual void	SetErrorCode (unsigned long)
Protected Member Functions inherited from vtkObject
	vtkObject ()
virtual	~vtkObject ()
virtual void	RegisterInternal (vtkObjectBase *, int check)
virtual void	UnRegisterInternal (vtkObjectBase *, int check)
void	InternalGrabFocus (vtkCommand *mouseEvents, vtkCommand *keypressEvents=NULL)
void	InternalReleaseFocus ()
Protected Member Functions inherited from vtkObjectBase
	vtkObjectBase ()
virtual	~vtkObjectBase ()
virtual void	CollectRevisions (ostream &)
	vtkObjectBase (const vtkObjectBase &)
void	operator= (const vtkObjectBase &)

Protected Attributes
vtkNew< vtkPeriodicTable >	PeriodicTable
bool	RenderAtoms
int	AtomicRadiusType
float	AtomicRadiusScaleFactor
bool	RenderBonds
int	BondColorMode
bool	UseMultiCylindersForBonds
float	BondRadius
unsigned char	BondColor [3]
vtkNew< vtkGlyph3DMapper >	AtomGlyphMapper
vtkNew< vtkGlyph3DMapper >	BondGlyphMapper
Protected Attributes inherited from vtkMapper
vtkUnsignedCharArray *	Colors
int	InterpolateScalarsBeforeMapping
vtkFloatArray *	ColorCoordinates
vtkImageData *	ColorTextureMap
vtkScalarsToColors *	LookupTable
int	ScalarVisibility
vtkTimeStamp	BuildTime
double	ScalarRange [2]
int	UseLookupTableScalarRange
int	ImmediateModeRendering
int	ColorMode
int	ScalarMode
int	ScalarMaterialMode
double	RenderTime
int	ArrayId
char	ArrayName [256]
int	ArrayComponent
int	ArrayAccessMode
vtkIdType	FieldDataTupleId
int	Static
int	ForceCompileOnly
Protected Attributes inherited from vtkAbstractMapper3D
double	Bounds [6]
double	Center [3]
Protected Attributes inherited from vtkAbstractMapper
vtkTimerLog *	Timer
double	TimeToDraw
vtkWindow *	LastWindow
vtkPlaneCollection *	ClippingPlanes
Protected Attributes inherited from vtkAlgorithm
vtkInformation *	Information
double	Progress
char *	ProgressText
vtkProgressObserver *	ProgressObserver
unsigned long	ErrorCode
Protected Attributes inherited from vtkObject
bool	Debug
vtkTimeStamp	MTime
vtkSubjectHelper *	SubjectHelper
Protected Attributes inherited from vtkObjectBase
vtkAtomicInt32	ReferenceCount
vtkWeakPointerBase **	WeakPointers
vtkNew< vtkPolyData >	AtomGlyphPolyData
vtkNew< vtkTrivialProducer >	AtomGlyphPointOutput
vtkNew< vtkPolyData >	BondGlyphPolyData
vtkNew< vtkTrivialProducer >	BondGlyphPointOutput
bool	GlyphDataInitialized
virtual void	UpdateGlyphPolyData ()
virtual void	UpdateAtomGlyphPolyData ()
virtual void	UpdateBondGlyphPolyData ()

Additional Inherited Members
Public Attributes inherited from vtkAlgorithm
int	AbortExecute
Static Protected Member Functions inherited from vtkAlgorithm
static vtkInformationIntegerKey *	PORT_REQUIREMENTS_FILLED ()
Static Protected Attributes inherited from vtkAlgorithm
static vtkExecutive *	DefaultExecutivePrototype

Detailed Description

Mapper that draws vtkMolecule objects.

vtkMoleculeMapper uses glyphs (display lists) to quickly render a molecule.

Tests:

vtkMoleculeMapper (Tests)

Definition at line 44 of file vtkMoleculeMapper.h.

Member Typedef Documentation

typedef vtkMapper vtkMoleculeMapper::Superclass

Definition at line 48 of file vtkMoleculeMapper.h.

Member Enumeration Documentation

anonymous enum

Enumerator
CovalentRadius
VDWRadius
UnitRadius

Definition at line 101 of file vtkMoleculeMapper.h.

anonymous enum

Enumerator
SingleColor
DiscreteByAtom

Definition at line 142 of file vtkMoleculeMapper.h.

Constructor & Destructor Documentation

vtkMoleculeMapper::vtkMoleculeMapper ( )

protected

vtkMoleculeMapper::~vtkMoleculeMapper ( )

protected

Member Function Documentation

static vtkMoleculeMapper* vtkMoleculeMapper::New ( )

static

static int vtkMoleculeMapper::IsTypeOf ( const char *  type )

static

virtual int vtkMoleculeMapper::IsA ( const char *  name )

virtual

Return 1 if this class is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkMapper.

Reimplemented in vtkOpenGLMoleculeMapper.

static vtkMoleculeMapper* vtkMoleculeMapper::SafeDownCast ( vtkObjectBase *  o )

static

virtual vtkObjectBase* vtkMoleculeMapper::NewInstanceInternal ( ) const

protectedvirtual

Reimplemented from vtkMapper.

Reimplemented in vtkOpenGLMoleculeMapper.

vtkMoleculeMapper* vtkMoleculeMapper::NewInstance

(

)

const

void vtkMoleculeMapper::PrintSelf ( ostream &  os, vtkIndent  indent  )

virtual

Methods invoked by print to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkAlgorithm.

void vtkMoleculeMapper::SetInputData

(

vtkMolecule *

in

)

Get/Set the input vtkMolecule.

vtkMolecule* vtkMoleculeMapper::GetInput

(

)

Get/Set the input vtkMolecule.

void vtkMoleculeMapper::UseBallAndStickSettings

(

)

Set ivars to default ball-and-stick settings. This is equivalent to the following: - SetRenderAtoms( true ) - SetRenderBonds( true ) - SetAtomicRadiusType( VDWRadius ) - SetAtomicRadiusScaleFactor( 0.3 )

• SetBondColorMode( DiscreteByAtom ) - SetUseMultiCylindersForBonds( true ) - SetBondRadius( 0.075 )

void vtkMoleculeMapper::UseVDWSpheresSettings

(

)

Set ivars to default van der Waals spheres settings. This is equivalent to the following: - SetRenderAtoms( true ) - SetRenderBonds( true ) - SetAtomicRadiusType( VDWRadius ) - SetAtomicRadiusScaleFactor( 1.0 ) - SetBondColorMode( DiscreteByAtom ) - SetUseMultiCylindersForBonds( true ) - SetBondRadius( 0.075 )

void vtkMoleculeMapper::UseLiquoriceStickSettings

(

)

Set ivars to default liquorice stick settings. This is equivalent to the following: - SetRenderAtoms( true ) - SetRenderBonds( true ) - SetAtomicRadiusType( UnitRadius ) - SetAtomicRadiusScaleFactor( 0.1 )

• SetBondColorMode( DiscreteByAtom ) - SetUseMultiCylindersForBonds( false ) - SetBondRadius( 0.1 )

void vtkMoleculeMapper::UseFastSettings

(

)

Set ivars to use fast settings that may be useful for rendering extremely large molecules where the overall shape is more important than the details of the atoms/bond. This is equivalent to the following: - SetRenderAtoms( true ) - SetRenderBonds( true ) - SetAtomicRadiusType( UnitRadius ) - SetAtomicRadiusScaleFactor( 0.60 ) - SetBondColorMode( SingleColor ) - SetBondColor( 50, 50, 50 ) - SetUseMultiCylindersForBonds( false ) - SetBondRadius( 0.075 )

virtual bool vtkMoleculeMapper::GetRenderAtoms ( )

virtual

Get/Set whether or not to render atoms. Default: On.

virtual void vtkMoleculeMapper::SetRenderAtoms ( bool  )

virtual

Get/Set whether or not to render atoms. Default: On.

virtual void vtkMoleculeMapper::RenderAtomsOn ( )

virtual

Get/Set whether or not to render atoms. Default: On.

virtual void vtkMoleculeMapper::RenderAtomsOff ( )

virtual

Get/Set whether or not to render atoms. Default: On.

virtual bool vtkMoleculeMapper::GetRenderBonds ( )

virtual

Get/Set whether or not to render bonds. Default: On.

virtual void vtkMoleculeMapper::SetRenderBonds ( bool  )

virtual

Get/Set whether or not to render bonds. Default: On.

virtual void vtkMoleculeMapper::RenderBondsOn ( )

virtual

Get/Set whether or not to render bonds. Default: On.

virtual void vtkMoleculeMapper::RenderBondsOff ( )

virtual

Get/Set whether or not to render bonds. Default: On.

virtual int vtkMoleculeMapper::GetAtomicRadiusType ( )

virtual

Get/Set the type of radius used to generate the atoms. Default: VDWRadius.

virtual void vtkMoleculeMapper::SetAtomicRadiusType ( int  )

virtual

Get/Set the type of radius used to generate the atoms. Default: VDWRadius.

const char* vtkMoleculeMapper::GetAtomicRadiusTypeAsString

(

)

Get/Set the type of radius used to generate the atoms. Default: VDWRadius.

void vtkMoleculeMapper::SetAtomicRadiusTypeToCovalentRadius ( )

inline

Get/Set the type of radius used to generate the atoms. Default: VDWRadius.

Definition at line 113 of file vtkMoleculeMapper.h.

void vtkMoleculeMapper::SetAtomicRadiusTypeToVDWRadius ( )

inline

Get/Set the type of radius used to generate the atoms. Default: VDWRadius.

Definition at line 117 of file vtkMoleculeMapper.h.

void vtkMoleculeMapper::SetAtomicRadiusTypeToUnitRadius ( )

inline

Get/Set the type of radius used to generate the atoms. Default: VDWRadius.

Definition at line 121 of file vtkMoleculeMapper.h.

virtual float vtkMoleculeMapper::GetAtomicRadiusScaleFactor ( )

virtual

Get/Set the uniform scaling factor applied to the atoms. Default: 0.3.

virtual void vtkMoleculeMapper::SetAtomicRadiusScaleFactor ( float  )

virtual

Get/Set the uniform scaling factor applied to the atoms. Default: 0.3.

virtual bool vtkMoleculeMapper::GetUseMultiCylindersForBonds ( )

virtual

Get/Set whether multicylinders will be used to represent multiple bonds. Default: On.

virtual void vtkMoleculeMapper::SetUseMultiCylindersForBonds ( bool  )

virtual

Get/Set whether multicylinders will be used to represent multiple bonds. Default: On.

virtual void vtkMoleculeMapper::UseMultiCylindersForBondsOn ( )

virtual

Get/Set whether multicylinders will be used to represent multiple bonds. Default: On.

virtual void vtkMoleculeMapper::UseMultiCylindersForBondsOff ( )

virtual

Get/Set whether multicylinders will be used to represent multiple bonds. Default: On.

virtual int vtkMoleculeMapper::GetBondColorMode ( )

virtual

Get/Set the method by which bonds are colored. If 'SingleColor' is used, all bonds will be the same color. Use SetBondColor to set the rgb values used. If 'DiscreteByAtom' is selected, each bond is colored using the same lookup table as the atoms at each end, with a sharp color boundary at the bond center.

virtual void vtkMoleculeMapper::SetBondColorMode ( int  )

virtual

Get/Set the method by which bonds are colored. If 'SingleColor' is used, all bonds will be the same color. Use SetBondColor to set the rgb values used. If 'DiscreteByAtom' is selected, each bond is colored using the same lookup table as the atoms at each end, with a sharp color boundary at the bond center.

const char* vtkMoleculeMapper::GetBondColorModeAsString

(

)

Get/Set the method by which bonds are colored. If 'SingleColor' is used, all bonds will be the same color. Use SetBondColor to set the rgb values used. If 'DiscreteByAtom' is selected, each bond is colored using the same lookup table as the atoms at each end, with a sharp color boundary at the bond center.

void vtkMoleculeMapper::SetBondColorModeToSingleColor ( )

inline

Get/Set the method by which bonds are colored. If 'SingleColor' is used, all bonds will be the same color. Use SetBondColor to set the rgb values used. If 'DiscreteByAtom' is selected, each bond is colored using the same lookup table as the atoms at each end, with a sharp color boundary at the bond center.

Definition at line 156 of file vtkMoleculeMapper.h.

void vtkMoleculeMapper::SetBondColorModeToDiscreteByAtom ( )

inline

Get/Set the method by which bonds are colored. If 'SingleColor' is used, all bonds will be the same color. Use SetBondColor to set the rgb values used. If 'DiscreteByAtom' is selected, each bond is colored using the same lookup table as the atoms at each end, with a sharp color boundary at the bond center.

Definition at line 160 of file vtkMoleculeMapper.h.

virtual unsigned char* vtkMoleculeMapper::GetBondColor ( )

virtual

Get/Set the color of the bonds as an rgb tuple. Default: {50, 50, 50} (dark grey)

virtual void vtkMoleculeMapper::GetBondColor ( unsigned char &  , unsigned char &  , unsigned char &    )

virtual

Get/Set the color of the bonds as an rgb tuple. Default: {50, 50, 50} (dark grey)

virtual void vtkMoleculeMapper::GetBondColor ( unsigned  char[3] )

virtual

Get/Set the color of the bonds as an rgb tuple. Default: {50, 50, 50} (dark grey)

virtual void vtkMoleculeMapper::SetBondColor ( unsigned  char, unsigned  char, unsigned  char  )

virtual

Get/Set the color of the bonds as an rgb tuple. Default: {50, 50, 50} (dark grey)

virtual void vtkMoleculeMapper::SetBondColor ( unsigned  char[3] )

virtual

Get/Set the color of the bonds as an rgb tuple. Default: {50, 50, 50} (dark grey)

virtual float vtkMoleculeMapper::GetBondRadius ( )

virtual

Get/Set the radius of the bond cylinders. Default: 0.075

virtual void vtkMoleculeMapper::SetBondRadius ( float  )

virtual

Get/Set the radius of the bond cylinders. Default: 0.075

virtual void vtkMoleculeMapper::GetSelectedAtomsAndBonds ( vtkSelection *  selection, vtkIdTypeArray *  atomIds, vtkIdTypeArray *  bondIds  )

virtual

Extract the ids atoms and/or bonds rendered by this molecule from a vtkSelection object. The vtkIdTypeArray

virtual void vtkMoleculeMapper::GetSelectedAtoms ( vtkSelection *  selection, vtkIdTypeArray *  atomIds  )

inlinevirtual

Extract the ids atoms and/or bonds rendered by this molecule from a vtkSelection object. The vtkIdTypeArray

Definition at line 185 of file vtkMoleculeMapper.h.

virtual void vtkMoleculeMapper::GetSelectedBonds ( vtkSelection *  selection, vtkIdTypeArray *  bondIds  )

inlinevirtual

Extract the ids atoms and/or bonds rendered by this molecule from a vtkSelection object. The vtkIdTypeArray

Definition at line 190 of file vtkMoleculeMapper.h.

virtual void vtkMoleculeMapper::Render ( vtkRenderer *  , vtkActor *    )

virtual

Reimplemented from base class

Implements vtkMapper.

Reimplemented in vtkOpenGLMoleculeMapper.

virtual void vtkMoleculeMapper::ReleaseGraphicsResources ( vtkWindow *  )

virtual

Reimplemented from base class

Reimplemented from vtkMapper.

Reimplemented in vtkOpenGLMoleculeMapper.

double* vtkMoleculeMapper::GetBounds ( )

virtual

Reimplemented from base class

Reimplemented from vtkMapper.

void vtkMoleculeMapper::GetBounds ( double  bounds[6] )

inlinevirtual

Reimplemented from base class

Reimplemented from vtkMapper.

Definition at line 202 of file vtkMoleculeMapper.h.

virtual int vtkMoleculeMapper::FillInputPortInformation ( int  port, vtkInformation *  info  )

virtual

Reimplemented from base class

Reimplemented from vtkAlgorithm.

virtual bool vtkMoleculeMapper::GetSupportsSelection ( )

inlinevirtual

Reimplemented from base class

Reimplemented from vtkMapper.

Definition at line 204 of file vtkMoleculeMapper.h.

void vtkMoleculeMapper::GlyphRender ( vtkRenderer *  ren, vtkActor *  act  )

protected

Internal render methods

virtual void vtkMoleculeMapper::UpdateGlyphPolyData ( )

protectedvirtual

Cached variables and update methods

virtual void vtkMoleculeMapper::UpdateAtomGlyphPolyData ( )

protectedvirtual

Cached variables and update methods

Reimplemented in vtkOpenGLMoleculeMapper.

virtual void vtkMoleculeMapper::UpdateBondGlyphPolyData ( )

protectedvirtual

Cached variables and update methods

Reimplemented in vtkOpenGLMoleculeMapper.

Member Data Documentation

bool vtkMoleculeMapper::RenderAtoms

protected

Customize atom rendering

Definition at line 213 of file vtkMoleculeMapper.h.

int vtkMoleculeMapper::AtomicRadiusType

protected

Customize atom rendering

Definition at line 214 of file vtkMoleculeMapper.h.

float vtkMoleculeMapper::AtomicRadiusScaleFactor

protected

Customize atom rendering

Definition at line 215 of file vtkMoleculeMapper.h.

bool vtkMoleculeMapper::RenderBonds

protected

Customize bond rendering

Definition at line 220 of file vtkMoleculeMapper.h.

int vtkMoleculeMapper::BondColorMode

protected

Customize bond rendering

Definition at line 221 of file vtkMoleculeMapper.h.

bool vtkMoleculeMapper::UseMultiCylindersForBonds

protected

Customize bond rendering

Definition at line 222 of file vtkMoleculeMapper.h.

float vtkMoleculeMapper::BondRadius

protected

Customize bond rendering

Definition at line 223 of file vtkMoleculeMapper.h.

unsigned char vtkMoleculeMapper::BondColor[3]

protected

Customize bond rendering

Definition at line 224 of file vtkMoleculeMapper.h.

vtkNew<vtkPolyData> vtkMoleculeMapper::AtomGlyphPolyData

protected

Cached variables and update methods

Definition at line 232 of file vtkMoleculeMapper.h.

vtkNew<vtkTrivialProducer> vtkMoleculeMapper::AtomGlyphPointOutput

protected

Cached variables and update methods

Definition at line 233 of file vtkMoleculeMapper.h.

vtkNew<vtkPolyData> vtkMoleculeMapper::BondGlyphPolyData

protected

Cached variables and update methods

Definition at line 234 of file vtkMoleculeMapper.h.

vtkNew<vtkTrivialProducer> vtkMoleculeMapper::BondGlyphPointOutput

protected

Cached variables and update methods

Definition at line 235 of file vtkMoleculeMapper.h.

bool vtkMoleculeMapper::GlyphDataInitialized

protected

Cached variables and update methods

Definition at line 236 of file vtkMoleculeMapper.h.

vtkNew<vtkGlyph3DMapper> vtkMoleculeMapper::AtomGlyphMapper

protected

Internal mappers

Definition at line 244 of file vtkMoleculeMapper.h.

vtkNew<vtkGlyph3DMapper> vtkMoleculeMapper::BondGlyphMapper

protected

Internal mappers

Definition at line 245 of file vtkMoleculeMapper.h.

vtkNew<vtkPeriodicTable> vtkMoleculeMapper::PeriodicTable

protected

Periodic table for lookups

Definition at line 249 of file vtkMoleculeMapper.h.

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The documentation for this class was generated from the following file:

• /home/boeckb/code/depot/group-kitware/vtk/build-release/Utilities/Doxygen/dox/Domains/Chemistry/vtkMoleculeMapper.h