vtkMINCImageReader Class Reference

A reader for MINC files. More...

#include <vtkMINCImageReader.h>

Inheritance diagram for vtkMINCImageReader:

Collaboration diagram for vtkMINCImageReader:

Public Types
typedef vtkImageReader2	Superclass
Public Types inherited from vtkImageReader2
typedef vtkImageAlgorithm	Superclass
Public Types inherited from vtkImageAlgorithm
typedef vtkAlgorithm	Superclass
Public Types inherited from vtkAlgorithm
typedef vtkObject	Superclass
enum	DesiredOutputPrecision { SINGLE_PRECISION, DOUBLE_PRECISION, DEFAULT_PRECISION }
Public Types inherited from vtkObject
typedef vtkObjectBase	Superclass

Public Member Functions
virtual int	IsA (const char *type)
vtkMINCImageReader *	NewInstance () const
virtual void	PrintSelf (ostream &os, vtkIndent indent)
virtual void	SetFileName (const char *name)
virtual int	CanReadFile (const char *name)
virtual vtkMatrix4x4 *	GetDirectionCosines ()
virtual int	GetNumberOfTimeSteps ()
virtual vtkMINCImageAttributes *	GetImageAttributes ()
virtual const char *	GetFileExtensions ()
virtual const char *	GetDescriptiveName ()
virtual double	GetRescaleSlope ()
virtual double	GetRescaleIntercept ()
virtual void	SetRescaleRealValues (int)
virtual void	RescaleRealValuesOn ()
virtual void	RescaleRealValuesOff ()
virtual int	GetRescaleRealValues ()
virtual double *	GetDataRange ()
virtual void	GetDataRange (double range[2])
virtual void	SetTimeStep (int)
virtual int	GetTimeStep ()
Public Member Functions inherited from vtkImageReader2
vtkImageReader2 *	NewInstance () const
virtual void	SetHeaderSize (unsigned long size)
ifstream *	GetFile ()
virtual unsigned long *	GetDataIncrements ()
virtual void	GetDataIncrements (unsigned long data[4])
virtual int	OpenFile ()
virtual void	SeekFile (int i, int j, int k)
virtual char *	GetFileName ()
virtual void	SetFileNames (vtkStringArray *)
virtual vtkStringArray *	GetFileNames ()
virtual void	SetFilePrefix (const char *)
virtual char *	GetFilePrefix ()
virtual void	SetFilePattern (const char *)
virtual char *	GetFilePattern ()
virtual void	SetMemoryBuffer (void *)
virtual void *	GetMemoryBuffer ()
virtual void	SetMemoryBufferLength (vtkIdType buflen)
vtkIdType	GetMemoryBufferLength ()
virtual void	SetDataScalarType (int type)
virtual void	SetDataScalarTypeToFloat ()
virtual void	SetDataScalarTypeToDouble ()
virtual void	SetDataScalarTypeToInt ()
virtual void	SetDataScalarTypeToUnsignedInt ()
virtual void	SetDataScalarTypeToShort ()
virtual void	SetDataScalarTypeToUnsignedShort ()
virtual void	SetDataScalarTypeToChar ()
virtual void	SetDataScalarTypeToSignedChar ()
virtual void	SetDataScalarTypeToUnsignedChar ()
virtual int	GetDataScalarType ()
virtual void	SetNumberOfScalarComponents (int)
virtual int	GetNumberOfScalarComponents ()
virtual void	SetDataExtent (int, int, int, int, int, int)
virtual void	SetDataExtent (int[6])
virtual int *	GetDataExtent ()
virtual void	GetDataExtent (int &, int &, int &, int &, int &, int &)
virtual void	GetDataExtent (int[6])
virtual void	SetFileDimensionality (int)
int	GetFileDimensionality ()
virtual void	SetDataSpacing (double, double, double)
virtual void	SetDataSpacing (double[3])
virtual double *	GetDataSpacing ()
virtual void	GetDataSpacing (double &, double &, double &)
virtual void	GetDataSpacing (double[3])
virtual void	SetDataOrigin (double, double, double)
virtual void	SetDataOrigin (double[3])
virtual double *	GetDataOrigin ()
virtual void	GetDataOrigin (double &, double &, double &)
virtual void	GetDataOrigin (double[3])
unsigned long	GetHeaderSize ()
unsigned long	GetHeaderSize (unsigned long slice)
virtual void	SetDataByteOrderToBigEndian ()
virtual void	SetDataByteOrderToLittleEndian ()
virtual int	GetDataByteOrder ()
virtual void	SetDataByteOrder (int)
virtual const char *	GetDataByteOrderAsString ()
virtual void	SetFileNameSliceOffset (int)
virtual int	GetFileNameSliceOffset ()
virtual void	SetFileNameSliceSpacing (int)
virtual int	GetFileNameSliceSpacing ()
virtual void	SetSwapBytes (int)
virtual int	GetSwapBytes ()
virtual void	SwapBytesOn ()
virtual void	SwapBytesOff ()
virtual void	FileLowerLeftOn ()
virtual void	FileLowerLeftOff ()
virtual int	GetFileLowerLeft ()
virtual void	SetFileLowerLeft (int)
virtual void	ComputeInternalFileName (int slice)
virtual char *	GetInternalFileName ()
virtual int	CanReadFile (const char *vtkNotUsed(fname))
Public Member Functions inherited from vtkImageAlgorithm
vtkImageAlgorithm *	NewInstance () const
vtkImageData *	GetOutput ()
vtkImageData *	GetOutput (int)
virtual void	SetOutput (vtkDataObject *d)
virtual int	ProcessRequest (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
void	SetInputData (vtkDataObject *)
void	SetInputData (int, vtkDataObject *)
vtkDataObject *	GetInput (int port)
vtkDataObject *	GetInput ()
vtkImageData *	GetImageDataInput (int port)
virtual void	AddInputData (vtkDataObject *)
virtual void	AddInputData (int, vtkDataObject *)
Public Member Functions inherited from vtkAlgorithm
vtkAlgorithm *	NewInstance () const
int	HasExecutive ()
vtkExecutive *	GetExecutive ()
virtual void	SetExecutive (vtkExecutive *executive)
virtual int	ModifyRequest (vtkInformation *request, int when)
vtkInformation *	GetInputPortInformation (int port)
vtkInformation *	GetOutputPortInformation (int port)
int	GetNumberOfInputPorts ()
int	GetNumberOfOutputPorts ()
void	UpdateProgress (double amount)
vtkInformation *	GetInputArrayInformation (int idx)
void	RemoveAllInputs ()
vtkDataObject *	GetOutputDataObject (int port)
virtual void	RemoveInputConnection (int port, vtkAlgorithmOutput *input)
virtual void	RemoveInputConnection (int port, int idx)
virtual void	RemoveAllInputConnections (int port)
int	GetNumberOfInputConnections (int port)
int	GetTotalNumberOfInputConnections ()
vtkAlgorithmOutput *	GetInputConnection (int port, int index)
vtkAlgorithm *	GetInputAlgorithm (int port, int index, int &algPort)
vtkAlgorithm *	GetInputAlgorithm (int port, int index)
vtkExecutive *	GetInputExecutive (int port, int index)
vtkInformation *	GetInputInformation (int port, int index)
vtkInformation *	GetOutputInformation (int port)
virtual void	UpdateInformation ()
virtual void	UpdateDataObject ()
virtual void	PropagateUpdateExtent ()
virtual void	UpdateWholeExtent ()
void	ConvertTotalInputToPortConnection (int ind, int &port, int &conn)
int	SetUpdateExtentToWholeExtent (int port)
int	SetUpdateExtentToWholeExtent ()
void	SetUpdateExtent (int port, int extent[6])
int	ProcessRequest (vtkInformation *request, vtkCollection *inInfo, vtkInformationVector *outInfo)
virtual int	ComputePipelineMTime (vtkInformation *request, vtkInformationVector **inInfoVec, vtkInformationVector *outInfoVec, int requestFromOutputPort, unsigned long *mtime)
virtual vtkInformation *	GetInformation ()
virtual void	SetInformation (vtkInformation *)
virtual void	Register (vtkObjectBase *o)
virtual void	UnRegister (vtkObjectBase *o)
virtual void	SetAbortExecute (int)
virtual int	GetAbortExecute ()
virtual void	AbortExecuteOn ()
virtual void	AbortExecuteOff ()
virtual void	SetProgress (double)
virtual double	GetProgress ()
void	SetProgressText (const char *ptext)
virtual char *	GetProgressText ()
virtual unsigned long	GetErrorCode ()
virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, const char *name)
virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, int fieldAttributeType)
virtual void	SetInputArrayToProcess (int idx, vtkInformation *info)
virtual void	SetInputArrayToProcess (int idx, int port, int connection, const char *fieldAssociation, const char *attributeTypeorName)
vtkDataObject *	GetInputDataObject (int port, int connection)
virtual void	SetInputConnection (int port, vtkAlgorithmOutput *input)
virtual void	SetInputConnection (vtkAlgorithmOutput *input)
virtual void	AddInputConnection (int port, vtkAlgorithmOutput *input)
virtual void	AddInputConnection (vtkAlgorithmOutput *input)
virtual void	SetInputDataObject (int port, vtkDataObject *data)
virtual void	SetInputDataObject (vtkDataObject *data)
virtual void	AddInputDataObject (int port, vtkDataObject *data)
virtual void	AddInputDataObject (vtkDataObject *data)
vtkAlgorithmOutput *	GetOutputPort (int index)
vtkAlgorithmOutput *	GetOutputPort ()
vtkAlgorithm *	GetInputAlgorithm ()
vtkExecutive *	GetInputExecutive ()
vtkInformation *	GetInputInformation ()
virtual void	Update (int port)
virtual void	Update ()
virtual void	SetReleaseDataFlag (int)
virtual int	GetReleaseDataFlag ()
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
int	UpdateExtentIsEmpty (vtkInformation *pinfo, vtkDataObject *output)
int	UpdateExtentIsEmpty (vtkInformation *pinfo, int extentType)
void	SetUpdateExtent (int port, int piece, int numPieces, int ghostLevel)
void	SetUpdateExtent (int piece, int numPieces, int ghostLevel)
void	SetUpdateExtent (int extent[6])
int *	GetUpdateExtent ()
int *	GetUpdateExtent (int port)
void	GetUpdateExtent (int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)
void	GetUpdateExtent (int port, int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)
void	GetUpdateExtent (int extent[6])
void	GetUpdateExtent (int port, int extent[6])
int	GetUpdatePiece ()
int	GetUpdatePiece (int port)
int	GetUpdateNumberOfPieces ()
int	GetUpdateNumberOfPieces (int port)
int	GetUpdateGhostLevel ()
int	GetUpdateGhostLevel (int port)
void	SetProgressObserver (vtkProgressObserver *)
virtual vtkProgressObserver *	GetProgressObserver ()
Public Member Functions inherited from vtkObject
vtkObject *	NewInstance () const
virtual void	DebugOn ()
virtual void	DebugOff ()
bool	GetDebug ()
void	SetDebug (bool debugFlag)
virtual void	Modified ()
virtual unsigned long	GetMTime ()
unsigned long	AddObserver (unsigned long event, vtkCommand *, float priority=0.0f)
unsigned long	AddObserver (const char *event, vtkCommand *, float priority=0.0f)
vtkCommand *	GetCommand (unsigned long tag)
void	RemoveObserver (vtkCommand *)
void	RemoveObservers (unsigned long event, vtkCommand *)
void	RemoveObservers (const char *event, vtkCommand *)
int	HasObserver (unsigned long event, vtkCommand *)
int	HasObserver (const char *event, vtkCommand *)
void	RemoveObserver (unsigned long tag)
void	RemoveObservers (unsigned long event)
void	RemoveObservers (const char *event)
void	RemoveAllObservers ()
int	HasObserver (unsigned long event)
int	HasObserver (const char *event)
template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f)
template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f)
template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, bool(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f)
int	InvokeEvent (unsigned long event, void *callData)
int	InvokeEvent (const char *event, void *callData)
int	InvokeEvent (unsigned long event)
int	InvokeEvent (const char *event)
Public Member Functions inherited from vtkObjectBase
const char *	GetClassName () const
virtual void	Delete ()
virtual void	FastDelete ()
void	Print (ostream &os)
void	SetReferenceCount (int)
void	PrintRevisions (ostream &)
virtual void	PrintHeader (ostream &os, vtkIndent indent)
virtual void	PrintTrailer (ostream &os, vtkIndent indent)
int	GetReferenceCount ()

Static Public Member Functions
static int	IsTypeOf (const char *type)
static vtkMINCImageReader *	SafeDownCast (vtkObjectBase *o)
static vtkMINCImageReader *	New ()
Static Public Member Functions inherited from vtkImageReader2
static vtkImageReader2 *	New ()
static int	IsTypeOf (const char *type)
static vtkImageReader2 *	SafeDownCast (vtkObjectBase *o)
Static Public Member Functions inherited from vtkImageAlgorithm
static int	IsTypeOf (const char *type)
static vtkImageAlgorithm *	SafeDownCast (vtkObjectBase *o)
Static Public Member Functions inherited from vtkAlgorithm
static vtkAlgorithm *	New ()
static int	IsTypeOf (const char *type)
static vtkAlgorithm *	SafeDownCast (vtkObjectBase *o)
static vtkInformationIntegerKey *	INPUT_IS_OPTIONAL ()
static vtkInformationIntegerKey *	INPUT_IS_REPEATABLE ()
static vtkInformationInformationVectorKey *	INPUT_REQUIRED_FIELDS ()
static vtkInformationStringVectorKey *	INPUT_REQUIRED_DATA_TYPE ()
static vtkInformationInformationVectorKey *	INPUT_ARRAYS_TO_PROCESS ()
static vtkInformationIntegerKey *	INPUT_PORT ()
static vtkInformationIntegerKey *	INPUT_CONNECTION ()
static vtkInformationIntegerKey *	CAN_PRODUCE_SUB_EXTENT ()
static vtkInformationIntegerKey *	CAN_HANDLE_PIECE_REQUEST ()
static void	SetDefaultExecutivePrototype (vtkExecutive *proto)
Static Public Member Functions inherited from vtkObject
static int	IsTypeOf (const char *type)
static vtkObject *	SafeDownCast (vtkObjectBase *o)
static vtkObject *	New ()
static void	BreakOnError ()
static void	SetGlobalWarningDisplay (int val)
static void	GlobalWarningDisplayOn ()
static void	GlobalWarningDisplayOff ()
static int	GetGlobalWarningDisplay ()
Static Public Member Functions inherited from vtkObjectBase
static int	IsTypeOf (const char *name)
static vtkObjectBase *	New ()

Protected Member Functions
virtual vtkObjectBase *	NewInstanceInternal () const
	vtkMINCImageReader ()
	~vtkMINCImageReader ()
virtual int	OpenNetCDFFile (const char *filename, int &ncid)
virtual int	CloseNetCDFFile (int ncid)
virtual int	IndexFromDimensionName (const char *dimName)
virtual int	ReadMINCFileAttributes ()
virtual void	FindRangeAndRescaleValues ()
virtual void	ExecuteInformation ()
virtual void	ExecuteDataWithInformation (vtkDataObject *out, vtkInformation *outInfo)
Protected Member Functions inherited from vtkImageReader2
virtual int	RequestInformation (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector)
virtual void	ComputeDataIncrements ()
	vtkImageReader2 ()
	~vtkImageReader2 ()
Protected Member Functions inherited from vtkImageAlgorithm
	vtkImageAlgorithm ()
	~vtkImageAlgorithm ()
virtual int	RequestUpdateExtent (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
virtual void	CopyInputArrayAttributesToOutput (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector)
virtual int	RequestData (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector)
virtual void	ExecuteData (vtkDataObject *output)
virtual void	Execute ()
virtual void	AllocateOutputData (vtkImageData *out, vtkInformation *outInfo, int *uExtent)
virtual vtkImageData *	AllocateOutputData (vtkDataObject *out, vtkInformation *outInfo)
virtual void	CopyAttributeData (vtkImageData *in, vtkImageData *out, vtkInformationVector **inputVector)
virtual int	FillOutputPortInformation (int port, vtkInformation *info)
virtual int	FillInputPortInformation (int port, vtkInformation *info)
Protected Member Functions inherited from vtkAlgorithm
	vtkAlgorithm ()
	~vtkAlgorithm ()
virtual void	SetNumberOfInputPorts (int n)
virtual void	SetNumberOfOutputPorts (int n)
int	InputPortIndexInRange (int index, const char *action)
int	OutputPortIndexInRange (int index, const char *action)
int	GetInputArrayAssociation (int idx, vtkInformationVector **inputVector)
virtual vtkExecutive *	CreateDefaultExecutive ()
virtual void	ReportReferences (vtkGarbageCollector *)
virtual void	SetNumberOfInputConnections (int port, int n)
int	GetInputArrayAssociation (int idx, int connection, vtkInformationVector **inputVector)
int	GetInputArrayAssociation (int idx, vtkDataObject *input)
vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector)
vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input)
vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input, int &association)
vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector)
vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input)
vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input, int &association)
vtkInformation *	GetInputArrayFieldInformation (int idx, vtkInformationVector **inputVector)
virtual void	SetNthInputConnection (int port, int index, vtkAlgorithmOutput *input)
void	SetInputDataInternal (int port, vtkDataObject *input)
void	AddInputDataInternal (int port, vtkDataObject *input)
virtual void	SetErrorCode (unsigned long)
Protected Member Functions inherited from vtkObject
	vtkObject ()
virtual	~vtkObject ()
virtual void	RegisterInternal (vtkObjectBase *, int check)
virtual void	UnRegisterInternal (vtkObjectBase *, int check)
void	InternalGrabFocus (vtkCommand *mouseEvents, vtkCommand *keypressEvents=NULL)
void	InternalReleaseFocus ()
Protected Member Functions inherited from vtkObjectBase
	vtkObjectBase ()
virtual	~vtkObjectBase ()
virtual void	CollectRevisions (ostream &)
	vtkObjectBase (const vtkObjectBase &)
void	operator= (const vtkObjectBase &)

Static Protected Member Functions
static int	ConvertMINCTypeToVTKType (int minctype, int mincsigned)
Static Protected Member Functions inherited from vtkAlgorithm
static vtkInformationIntegerKey *	PORT_REQUIREMENTS_FILLED ()

Protected Attributes
int	MINCImageType
int	MINCImageTypeSigned
double	ValidRange [2]
double	ImageRange [2]
double	DataRange [2]
int	NumberOfTimeSteps
int	TimeStep
vtkMatrix4x4 *	DirectionCosines
double	RescaleSlope
double	RescaleIntercept
int	RescaleRealValues
vtkMINCImageAttributes *	ImageAttributes
int	FileNameHasChanged
Protected Attributes inherited from vtkImageReader2
vtkStringArray *	FileNames
char *	InternalFileName
char *	FileName
char *	FilePrefix
char *	FilePattern
int	NumberOfScalarComponents
int	FileLowerLeft
void *	MemoryBuffer
vtkIdType	MemoryBufferLength
ifstream *	File
unsigned long	DataIncrements [4]
int	DataExtent [6]
int	SwapBytes
int	FileDimensionality
unsigned long	HeaderSize
int	DataScalarType
unsigned long	ManualHeaderSize
double	DataSpacing [3]
double	DataOrigin [3]
int	FileNameSliceOffset
int	FileNameSliceSpacing
Protected Attributes inherited from vtkAlgorithm
vtkInformation *	Information
double	Progress
char *	ProgressText
vtkProgressObserver *	ProgressObserver
unsigned long	ErrorCode
Protected Attributes inherited from vtkObject
bool	Debug
vtkTimeStamp	MTime
vtkSubjectHelper *	SubjectHelper
Protected Attributes inherited from vtkObjectBase
vtkAtomicInt32	ReferenceCount
vtkWeakPointerBase **	WeakPointers

Additional Inherited Members
Public Attributes inherited from vtkAlgorithm
int	AbortExecute
Static Protected Attributes inherited from vtkAlgorithm
static vtkExecutive *	DefaultExecutivePrototype

Detailed Description

A reader for MINC files.

MINC is a NetCDF-based medical image file format that was developed at the Montreal Neurological Institute in 1992. This class will read a MINC file into VTK, rearranging the data to match the VTK x, y, and z dimensions, and optionally rescaling real-valued data to VTK_FLOAT if RescaleRealValuesOn() is set. If RescaleRealValues is off, then the data will be stored in its original data type and the GetRescaleSlope(), GetRescaleIntercept() method can be used to retrieve global rescaling parameters. If the original file had a time dimension, the SetTimeStep() method can be used to specify a time step to read. All of the original header information can be accessed though the GetImageAttributes() method.

See also

vtkMINCImageWriter vtkMINCImageAttributes

Thanks:

Thanks to David Gobbi for writing this class and Atamai Inc. for contributing it to VTK.

Tests:

vtkMINCImageReader (Tests)

Definition at line 87 of file vtkMINCImageReader.h.

Member Typedef Documentation

typedef vtkImageReader2 vtkMINCImageReader::Superclass

Definition at line 90 of file vtkMINCImageReader.h.

Constructor & Destructor Documentation

vtkMINCImageReader::vtkMINCImageReader ( )

protected

vtkMINCImageReader::~vtkMINCImageReader ( )

protected

Member Function Documentation

static int vtkMINCImageReader::IsTypeOf ( const char *  type )

static

virtual int vtkMINCImageReader::IsA ( const char *  name )

virtual

Return 1 if this class is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkImageReader2.

static vtkMINCImageReader* vtkMINCImageReader::SafeDownCast ( vtkObjectBase *  o )

static

virtual vtkObjectBase* vtkMINCImageReader::NewInstanceInternal ( ) const

protectedvirtual

Reimplemented from vtkImageReader2.

vtkMINCImageReader* vtkMINCImageReader::NewInstance

(

)

const

static vtkMINCImageReader* vtkMINCImageReader::New ( )

static

virtual void vtkMINCImageReader::PrintSelf ( ostream &  os, vtkIndent  indent  )

virtual

Methods invoked by print to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkImageReader2.

virtual void vtkMINCImageReader::SetFileName ( const char *  name )

virtual

Set the file name.

Reimplemented from vtkImageReader2.

virtual const char* vtkMINCImageReader::GetFileExtensions ( )

inlinevirtual

Get the entension for this file format.

Reimplemented from vtkImageReader2.

Definition at line 100 of file vtkMINCImageReader.h.

virtual const char* vtkMINCImageReader::GetDescriptiveName ( )

inlinevirtual

Get the name of this file format.

Reimplemented from vtkImageReader2.

Definition at line 106 of file vtkMINCImageReader.h.

virtual int vtkMINCImageReader::CanReadFile ( const char *  name )

virtual

Test whether the specified file can be read.

virtual vtkMatrix4x4* vtkMINCImageReader::GetDirectionCosines ( )

virtual

Get a matrix that describes the orientation of the data. The three columns of the matrix are the direction cosines for the x, y and z dimensions respectively.

virtual double vtkMINCImageReader::GetRescaleSlope ( )

virtual

Get the slope and intercept for rescaling the scalar values to real data values. To convert scalar values to real values, use the equation y = x*RescaleSlope + RescaleIntercept.

virtual double vtkMINCImageReader::GetRescaleIntercept ( )

virtual

Get the slope and intercept for rescaling the scalar values to real data values. To convert scalar values to real values, use the equation y = x*RescaleSlope + RescaleIntercept.

virtual void vtkMINCImageReader::SetRescaleRealValues ( int  )

virtual

Rescale real data values to float. If this is done, the RescaleSlope and RescaleIntercept will be set to 1 and 0 respectively. This is off by default.

virtual void vtkMINCImageReader::RescaleRealValuesOn ( )

virtual

Rescale real data values to float. If this is done, the RescaleSlope and RescaleIntercept will be set to 1 and 0 respectively. This is off by default.

virtual void vtkMINCImageReader::RescaleRealValuesOff ( )

virtual

Rescale real data values to float. If this is done, the RescaleSlope and RescaleIntercept will be set to 1 and 0 respectively. This is off by default.

virtual int vtkMINCImageReader::GetRescaleRealValues ( )

virtual

Rescale real data values to float. If this is done, the RescaleSlope and RescaleIntercept will be set to 1 and 0 respectively. This is off by default.

virtual double* vtkMINCImageReader::GetDataRange ( )

virtual

Get the scalar range of the output from the information in the file header. This is more efficient that computing the scalar range, but in some cases the MINC file stores an incorrect valid_range and the DataRange will be incorrect.

virtual void vtkMINCImageReader::GetDataRange ( double  range[2] )

inlinevirtual

Get the scalar range of the output from the information in the file header. This is more efficient that computing the scalar range, but in some cases the MINC file stores an incorrect valid_range and the DataRange will be incorrect.

Definition at line 141 of file vtkMINCImageReader.h.

virtual int vtkMINCImageReader::GetNumberOfTimeSteps ( )

virtual

Get the number of time steps in the file.

virtual void vtkMINCImageReader::SetTimeStep ( int  )

virtual

Set the time step to read.

virtual int vtkMINCImageReader::GetTimeStep ( )

virtual

Set the time step to read.

virtual vtkMINCImageAttributes* vtkMINCImageReader::GetImageAttributes ( )

virtual

Get the image attributes, which contain patient information and other useful metadata.

virtual int vtkMINCImageReader::OpenNetCDFFile ( const char *  filename, int &  ncid  )

protectedvirtual

virtual int vtkMINCImageReader::CloseNetCDFFile ( int  ncid )

protectedvirtual

virtual int vtkMINCImageReader::IndexFromDimensionName ( const char *  dimName )

protectedvirtual

virtual int vtkMINCImageReader::ReadMINCFileAttributes ( )

protectedvirtual

virtual void vtkMINCImageReader::FindRangeAndRescaleValues ( )

protectedvirtual

static int vtkMINCImageReader::ConvertMINCTypeToVTKType ( int  minctype, int  mincsigned  )

staticprotected

virtual void vtkMINCImageReader::ExecuteInformation ( )

protectedvirtual

Reimplemented from vtkImageReader2.

virtual void vtkMINCImageReader::ExecuteDataWithInformation ( vtkDataObject *  output, vtkInformation *  outInfo  )

protectedvirtual

This is a convenience method that is implemented in many subclasses instead of RequestData. It is called by RequestData.

Reimplemented from vtkImageReader2.

Member Data Documentation

int vtkMINCImageReader::MINCImageType

protected

Definition at line 163 of file vtkMINCImageReader.h.

int vtkMINCImageReader::MINCImageTypeSigned

protected

Definition at line 164 of file vtkMINCImageReader.h.

double vtkMINCImageReader::ValidRange[2]

protected

Definition at line 166 of file vtkMINCImageReader.h.

double vtkMINCImageReader::ImageRange[2]

protected

Definition at line 167 of file vtkMINCImageReader.h.

double vtkMINCImageReader::DataRange[2]

protected

Definition at line 168 of file vtkMINCImageReader.h.

int vtkMINCImageReader::NumberOfTimeSteps

protected

Definition at line 170 of file vtkMINCImageReader.h.

int vtkMINCImageReader::TimeStep

protected

Definition at line 171 of file vtkMINCImageReader.h.

vtkMatrix4x4* vtkMINCImageReader::DirectionCosines

protected

Definition at line 172 of file vtkMINCImageReader.h.

double vtkMINCImageReader::RescaleSlope

protected

Definition at line 173 of file vtkMINCImageReader.h.

double vtkMINCImageReader::RescaleIntercept

protected

Definition at line 174 of file vtkMINCImageReader.h.

int vtkMINCImageReader::RescaleRealValues

protected

Definition at line 175 of file vtkMINCImageReader.h.

vtkMINCImageAttributes* vtkMINCImageReader::ImageAttributes

protected

Definition at line 176 of file vtkMINCImageReader.h.

int vtkMINCImageReader::FileNameHasChanged

protected

Definition at line 178 of file vtkMINCImageReader.h.

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The documentation for this class was generated from the following file:

• dox/IO/MINC/vtkMINCImageReader.h