VTK  9.5.20251126
vtkHDFReader.h
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1// SPDX-FileCopyrightText: Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
2// SPDX-License-Identifier: BSD-3-Clause
51
52#ifndef vtkHDFReader_h
53#define vtkHDFReader_h
54
55#include "vtkDataAssembly.h" // For vtkDataAssembly
57#include "vtkIOHDFModule.h" // For export macro
58#include "vtkSmartPointer.h" // For vtkSmartPointer
59
60#include <array> // For storing the time range
61#include <memory> // For std::unique_ptr
62#include <vector> // For storing list of values
63
64VTK_ABI_NAMESPACE_BEGIN
67class vtkCellData;
68class vtkCommand;
71class vtkDataSet;
74class vtkImageData;
75class vtkInformation;
81class vtkPointData;
82class vtkPolyData;
85
90
91class VTKIOHDF_EXPORT vtkHDFReader : public vtkDataObjectAlgorithm
92{
93public:
94 static vtkHDFReader* New();
96 void PrintSelf(ostream& os, vtkIndent indent) override;
97
99
105
107
116
124 virtual int CanReadFile(VTK_FILEPATH const char* name);
125
127
133
135
143
145
151
153
157 const char* GetPointArrayName(int index);
158 const char* GetCellArrayName(int index);
160
162
172 vtkGetMacro(Step, vtkIdType);
173 vtkSetMacro(Step, vtkIdType);
174 vtkGetMacro(TimeValue, double);
175 const std::array<double, 2>& GetTimeRange() const { return this->TimeRange; }
177
179
188 vtkGetMacro(UseCache, bool);
189 vtkSetMacro(UseCache, bool);
190 vtkBooleanMacro(UseCache, bool);
192
194
212 VTK_DEPRECATED_IN_9_5_0("Use vtkMergeBlocks or vtkAppendDataSets instead.")
213 vtkGetMacro(MergeParts, bool);
214 VTK_DEPRECATED_IN_9_5_0("Use vtkMergeBlocks vtkAppendDataSets instead.")
215 vtkSetMacro(MergeParts, bool);
216 VTK_DEPRECATED_IN_9_5_0("Use vtkMergeBlocks vtkAppendDataSets instead.")
217 virtual void MergePartsOn();
218 VTK_DEPRECATED_IN_9_5_0("Use vtkMergeBlocks vtkAppendDataSets instead.")
219 virtual void MergePartsOff();
221
223
229 vtkSetMacro(MaximumLevelsToReadByDefaultForAMR, unsigned int);
230 vtkGetMacro(MaximumLevelsToReadByDefaultForAMR, unsigned int);
232
234
238 void SetAttributeOriginalIdName(vtkIdType attribute, const std::string& name);
240
245
246protected:
248 ~vtkHDFReader() override;
249
253 int CanReadFileVersion(int major, int minor);
254
256
261 int Read(vtkInformation* outInfo, vtkImageData* data);
268 int ReadRecursively(vtkInformation* outInfo, vtkMultiBlockDataSet* data, const std::string& path);
270
276 int Read(const std::vector<vtkIdType>& numberOfPoints,
277 const std::vector<vtkIdType>& numberOfCells,
278 const std::vector<vtkIdType>& numberOfConnectivityIds, vtkIdType partOffset,
279 vtkIdType startingPointOffset, vtkIdType startingCellOffset,
280 vtkIdType startingConnectctivityIdOffset, int filePiece, vtkUnstructuredGrid* pieceData);
281
286
291 vtkObject* caller, unsigned long eid, void* clientdata, void* calldata);
292
294
299 vtkInformationVector* outputVector) override;
301 vtkInformationVector* outputVector) override;
303 vtkInformationVector* outputVector) override;
305
310
315
319 char* FileName;
320
325
331
338
343
345
350 double TimeValue = 0.0;
351 std::array<double, 2> TimeRange;
353
358 // VTK_DEPRECATED_IN_9_5_0( )
359 bool MergeParts = false;
360
362
363 bool UseCache = false;
364 struct DataCache;
365 std::shared_ptr<DataCache> Cache;
366
367private:
368 vtkHDFReader(const vtkHDFReader&) = delete;
369 void operator=(const vtkHDFReader&) = delete;
370
371 class Implementation;
372 Implementation* Impl;
373
378 bool ReadData(vtkInformation* outInfo, vtkDataObject* data);
379
385 int Read(const std::vector<vtkIdType>& numberOfTrees, const std::vector<vtkIdType>& numberOfCells,
386 const std::vector<vtkIdType>& numberOfDepths, const std::vector<vtkIdType>& descriptorSizes,
387 const vtkHDFUtilities::TemporalHyperTreeGridOffsets& htgTemporalOffsets, int filePiece,
388 vtkHyperTreeGrid* pieceData);
389
393 void SetHasTemporalData(bool useTemporalData);
394
398 void GenerateAssembly();
399
404 bool RetrieveStepsFromAssembly();
405
410 bool RetrieveDataArraysFromAssembly();
411
419 bool AddOriginalIds(vtkDataSetAttributes* attributes, vtkIdType size, const std::string& name);
420
427 void CleanOriginalIds(vtkPartitionedDataSet* output);
428
429 bool MeshGeometryChangedFromPreviousTimeStep = true;
430
432
433 std::map<vtkIdType, std::string> AttributesOriginalIdName{
434 { vtkDataObject::POINT, "__pointsOriginalIds__" },
435 { vtkDataObject::CELL, "__cellOriginalIds__" }, { vtkDataObject::FIELD, "__fieldOriginalIds__" }
436 };
437
438 bool HasTemporalData = false;
439 std::string CompositeCachePath; // Identifier for the current composite piece
440};
441
442VTK_ABI_NAMESPACE_END
443#endif
Abstract superclass for all arrays.
supports function callbacks
represent and manipulate cell attribute data
superclass for callback/observer methods
Definition vtkCommand.h:384
Store on/off settings for data arrays, etc.
hierarchical representation to use with vtkPartitionedDataSetCollection
vtkDataObjectMeshCache is a class to store and reuse the mesh of a vtkDataSet, while forwarding data ...
general representation of visualization data
represent and manipulate attribute data in a dataset
abstract class to specify dataset behavior
Definition vtkDataSet.h:166
Implementation for the vtkHDFReader.
int GetNumberOfPointArrays()
Get the number of point or cell arrays available in the input.
int GetNumberOfCellArrays()
Get the number of point or cell arrays available in the input.
const char * GetCellArrayName(int index)
Get the name of the point or cell array with the given index in the input.
vtkIdType Step
Temporal data properties.
vtkSmartPointer< vtkResourceStream > Stream
The input stream.
virtual vtkDataArraySelection * GetFieldDataArraySelection()
Get the data array selection tables used to configure which data arrays are loaded by the reader.
vtkDataSet * GetOutputAsDataSet(int index)
Get the output as a vtkDataSet pointer.
std::shared_ptr< DataCache > Cache
virtual int CanReadFile(const char *name)
Test whether the file (type) with the given name can be read by this reader.
virtual vtkDataArraySelection * GetCellDataArraySelection()
Get the data array selection tables used to configure which data arrays are loaded by the reader.
int CanReadFileVersion(int major, int minor)
Test if the reader can read a file with the given version number.
int Read(vtkInformation *outInfo, vtkImageData *data)
Reads the 'data' requested in 'outInfo' (through extents or pieces) for a specialized data type.
const std::array< double, 2 > & GetTimeRange() const
Getters and setters for temporal data.
vtkSetFilePathMacro(FileName)
Get/Set the name of the input file.
int RequestInformation(vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override
Standard functions to specify the type, information and read the data from the file.
int RequestDataObject(vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override
Standard functions to specify the type, information and read the data from the file.
virtual void MergePartsOn()
/!
vtkMTimeType GetMTime() override
Overridden to take into account mtime from the internal vtkResourceStream.
int RequestData(vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override
Standard functions to specify the type, information and read the data from the file.
static vtkHDFReader * New()
virtual void MergePartsOff()
/!
vtkGetFilePathMacro(FileName)
Get/Set the name of the input file.
static void SelectionModifiedCallback(vtkObject *caller, unsigned long eid, void *clientdata, void *calldata)
Modify this object when an array selection is changed.
bool MergeParts
/!
int AddFieldArrays(vtkDataObject *data)
Read the field arrays from the file and add them to the dataset.
std::array< double, 2 > TimeRange
Assembly used for PartitionedDataSetCollection.
vtkResourceStream * GetStream()
Specify stream to read from When both Stream and Filename are set, stream is used.
unsigned int MaximumLevelsToReadByDefaultForAMR
void SetAttributeOriginalIdName(vtkIdType attribute, const std::string &name)
Get or Set the Original id name of an attribute (POINT, CELL, FIELD...)
vtkIdType NumberOfSteps
Assembly used for PartitionedDataSetCollection.
double TimeValue
Assembly used for PartitionedDataSetCollection.
const char * GetPointArrayName(int index)
Get the name of the point or cell array with the given index in the input.
char * FileName
The input file's name.
int ReadRecursively(vtkInformation *outInfo, vtkMultiBlockDataSet *data, const std::string &path)
Reads the 'data' requested in 'outInfo' (through extents or pieces) for a specialized data type.
int SetupInformation(vtkInformation *outInfo)
Setup the information pass in parameter based on current vtkHDF file loaded.
virtual vtkDataArraySelection * GetPointDataArraySelection()
Get the data array selection tables used to configure which data arrays are loaded by the reader.
bool GetHasTemporalData()
Getters and setters for temporal data.
vtkDataArraySelection * DataArraySelection[3]
The array selections.
vtkCallbackCommand * SelectionObserver
The observer to modify this object when the array selections are modified.
std::string GetAttributeOriginalIdName(vtkIdType attribute)
Get or Set the Original id name of an attribute (POINT, CELL, FIELD...)
void SetStream(vtkResourceStream *stream)
Specify stream to read from When both Stream and Filename are set, stream is used.
vtkSmartPointer< vtkDataAssembly > Assembly
Assembly used for PartitionedDataSetCollection.
void PrintPieceInformation(vtkInformation *outInfo)
Print update number of pieces, piece number and ghost levels.
vtkDataSet * GetOutputAsDataSet()
Get the output as a vtkDataSet pointer.
void PrintSelf(ostream &os, vtkIndent indent) override
Methods invoked by print to print information about the object including superclasses.
A dataset containing a grid of vtkHyperTree instances arranged as a rectilinear grid.
topologically and geometrically regular array of data
a simple class to control print indentation
Definition vtkIndent.h:108
Store zero or more vtkInformation instances.
Store vtkAlgorithm input/output information.
Composite dataset that organizes datasets into blocks.
Allocate and hold a VTK object.
Definition vtkNew.h:167
a multi-resolution dataset based on vtkCartesianGrid allowing overlaps
Composite dataset that groups datasets as a collection.
composite dataset to encapsulates a dataset consisting of partitions.
represent and manipulate point attribute data
concrete dataset represents vertices, lines, polygons, and triangle strips
Abstract class used for custom streams.
Hold a reference to a vtkObjectBase instance.
dataset represents arbitrary combinations of all possible cell types
Common utility variables and functions for reader and writer of vtkHDF.
#define VTK_DEPRECATED_IN_9_5_0(reason)
int vtkIdType
Definition vtkType.h:367
vtkTypeUInt32 vtkMTimeType
Definition vtkType.h:322
#define VTK_FILEPATH