VTK  9.4.20250420
vtkHDFWriterImplementation.h
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1// SPDX-FileCopyrightText: Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
2// SPDX-License-Identifier: BSD-3-Clause
10#ifndef vtkHDFWriterImplementation_h
11#define vtkHDFWriterImplementation_h
12
13#include "vtkAbstractArray.h"
14#include "vtkCellArray.h"
15#include "vtkHDF5ScopedHandle.h"
16#include "vtkHDFUtilities.h"
17#include "vtkHDFWriter.h"
18
19#include <array>
20#include <string>
21
22VTK_ABI_NAMESPACE_BEGIN
23
25{
26public:
27 hid_t GetRoot() { return this->Root; }
28 hid_t GetFile() { return this->File; }
29 hid_t GetStepsGroup(hid_t currentGroup);
30
37 bool WriteHeader(hid_t group, const char* hdfType);
38
46 bool CreateFile(bool overwrite, const std::string& filename);
47
52 bool OpenFile();
53
59 void CloseFile();
60
66 bool OpenSubfile(const std::string& filename);
67
69
74 void SetSubFilesReady(bool status) { this->SubFilesReady = status; }
75 bool GetSubFilesReady() { return this->SubFilesReady; }
77
82
89 typedef struct
90 {
91 const char* hdfGroupName;
94
98 std::vector<PolyDataTopos> GetCellArraysForTopos(vtkPolyData* polydata);
99
100 // Creation utility functions
101
106 vtkHDF::ScopedH5DHandle CreateAndWriteHdfDataset(hid_t group, hid_t type, hid_t source_type,
107 const char* name, int rank, std::vector<hsize_t> dimensions, const void* data);
108
114 vtkHDF::ScopedH5SHandle CreateSimpleDataspace(int rank, const hsize_t dimensions[]);
115
120 vtkHDF::ScopedH5AHandle CreateScalarAttribute(hid_t group, const char* name, int value);
121
127 vtkHDF::ScopedH5SHandle CreateUnlimitedSimpleDataspace(hsize_t numCols);
128
133 vtkHDF::ScopedH5GHandle CreateHdfGroup(hid_t group, const char* name);
134
139 vtkHDF::ScopedH5GHandle CreateHdfGroupWithLinkOrder(hid_t group, const char* name);
140
145 bool CreateSoftLink(hid_t group, const char* groupName, const char* targetLink);
146
152 hid_t group, const char* filename, const char* source, const char* targetLink);
153
157 vtkHDF::ScopedH5GHandle OpenExistingGroup(hid_t group, const char* name);
158
162 vtkHDF::ScopedH5DHandle OpenDataset(hid_t group, const char* name);
163
167 std::string GetGroupName(hid_t group);
168
173 vtkHDF::ScopedH5DHandle CreateHdfDataset(
174 hid_t group, const char* name, hid_t type, hid_t dataspace);
175
181 vtkHDF::ScopedH5DHandle CreateHdfDataset(
182 hid_t group, const char* name, hid_t type, int rank, const hsize_t dimensions[]);
183
191 bool CreateVirtualDataset(hid_t group, const char* name, hid_t type, int numComp);
192
194
201 bool WriteSumSteps(hid_t group, const char* name);
202 bool WriteSumStepsPolyData(hid_t group, const char* name);
204
210 vtkHDF::ScopedH5DHandle CreateChunkedHdfDataset(hid_t group, const char* name, hid_t type,
211 hid_t dataspace, hsize_t numCols, hsize_t chunkSize[], int compressionLevel = 0);
212
217 vtkHDF::ScopedH5SHandle CreateDataspaceFromArray(vtkAbstractArray* dataArray);
218
223 vtkHDF::ScopedH5DHandle CreateDatasetFromDataArray(
224 hid_t group, const char* name, hid_t type, vtkAbstractArray* dataArray);
225
227
231 vtkHDF::ScopedH5DHandle CreateSingleValueDataset(hid_t group, const char* name, int value);
233
239 bool InitDynamicDataset(hid_t group, const char* name, hid_t type, hsize_t cols,
240 hsize_t chunkSize[], int compressionLevel = 0);
241
248 bool AddSingleValueToDataset(hid_t dataset, int value, bool offset, bool trim = false);
249
254 bool AddFieldDataSizeValueToDataset(hid_t dataset, int* value, int size, bool offset);
255
264 bool AddArrayToDataset(hid_t dataset, vtkAbstractArray* dataArray, int trim = 0);
265
271 bool AddOrCreateDataset(hid_t group, const char* name, hid_t type, vtkAbstractArray* dataArray);
272
281 hid_t group, const char* name, int value, bool offset = false, bool trim = false);
282
291 hid_t group, const char* name, int* value, int size, bool offset = false);
292
295
296private:
297 vtkHDFWriter* Writer;
298 vtkHDF::ScopedH5FHandle File;
299 vtkHDF::ScopedH5GHandle Root;
300 vtkHDF::ScopedH5GHandle StepsGroup;
301 std::vector<vtkHDF::ScopedH5FHandle> Subfiles;
302 std::vector<std::string> SubfileNames;
303 bool SubFilesReady = false;
304
305 const std::array<std::string, 4> PrimitiveNames = { { "Vertices", "Lines", "Polygons",
306 "Strips" } };
307
312 hsize_t GetNumberOfCellsSubfile(const std::string& basePath, std::size_t subfileId, hsize_t part,
313 bool isPolyData, const std::string& groupName);
314
320 char GetPrimitive(hid_t group);
321
329 hsize_t GetSubfileNumberOf(const std::string& base, const std::string& qualifier,
330 std::size_t subfileId, hsize_t part, char primitive = 0xff);
331
332 std::string GetBasePath(const std::string& fullPath);
333
337 bool DatasetAndGroupExist(const std::string& dataset, hid_t group);
338
344 bool GetSubFilesDatasetSize(const char* datasetPath, const char* groupName, hsize_t& totalSize);
345
346 // Possible indexing mode of VTKHDF datasets. See `GetDatasetIndexationMode`
347 enum class IndexingMode
348 {
349 Points,
350 Cells,
351 Connectivity,
352 MetaData,
353 Undefined
354 };
355
363 IndexingMode GetDatasetIndexationMode(const std::string& path);
364};
365
366VTK_ABI_NAMESPACE_END
367#endif
368// VTK-HeaderTest-Exclude: vtkHDFWriterImplementation.h
Abstract superclass for all arrays.
object to represent cell connectivity
vtkHDF::ScopedH5DHandle CreateSingleValueDataset(hid_t group, const char *name, int value)
Creates a dataset and write a value to it.
bool AddOrCreateDataset(hid_t group, const char *name, hid_t type, vtkAbstractArray *dataArray)
Append the given array to the dataset with the given name, creating it if it does not exist yet.
bool GetSubFilesReady()
Inform the implementation that all the data has been written in subfiles, and that the virtual datase...
vtkHDF::ScopedH5AHandle CreateScalarAttribute(hid_t group, const char *name, int value)
Create a scalar integer attribute in the given group.
vtkHDF::ScopedH5GHandle CreateHdfGroup(hid_t group, const char *name)
Create a group in the given group from a dataspace.
vtkHDF::ScopedH5DHandle CreateAndWriteHdfDataset(hid_t group, hid_t type, hid_t source_type, const char *name, int rank, std::vector< hsize_t > dimensions, const void *data)
Create a dataset in the given group with the given parameters and write data to it Returned scoped ha...
hid_t GetStepsGroup(hid_t currentGroup)
vtkHDF::ScopedH5DHandle CreateDatasetFromDataArray(hid_t group, const char *name, hid_t type, vtkAbstractArray *dataArray)
Creates a dataset in the given group from a dataArray and write data to it Returned scoped handle may...
bool WriteSumSteps(hid_t group, const char *name)
For temporal multi-piece meta-files, write the dataset name in group group, which must be the "steps"...
bool CreateFile(bool overwrite, const std::string &filename)
Create the file from the filename and create the root VTKHDF group.
vtkHDF::ScopedH5GHandle CreateHdfGroupWithLinkOrder(hid_t group, const char *name)
Create a group that keeps track of link creation order Returned scoped handle may be invalid.
bool AddOrCreateSingleValueDataset(hid_t group, const char *name, int value, bool offset=false, bool trim=false)
Append a single integer value to the dataset with name name in group group.
vtkHDF::ScopedH5DHandle OpenDataset(hid_t group, const char *name)
Open and return an existing dataset using its group id and dataset name.
vtkHDF::ScopedH5GHandle OpenExistingGroup(hid_t group, const char *name)
Open and return an existing group thanks to id and a relative or absolute path to this group.
bool OpenFile()
Open existing VTKHDF file and set Root and File members.
vtkHDF::ScopedH5DHandle CreateHdfDataset(hid_t group, const char *name, hid_t type, int rank, const hsize_t dimensions[])
Create a dataset in the given group It internally creates a dataspace from a rank and dimensions Retu...
vtkHDF::ScopedH5SHandle CreateDataspaceFromArray(vtkAbstractArray *dataArray)
Creates a dataspace to the exact array dimensions Returned scoped handle may be invalid.
bool AddOrCreateFieldDataSizeValueDataset(hid_t group, const char *name, int *value, int size, bool offset=false)
Append a 2D integer value to the dataset with name FieldDataSize.
Implementation(vtkHDFWriter *writer)
bool InitDynamicDataset(hid_t group, const char *name, hid_t type, hsize_t cols, hsize_t chunkSize[], int compressionLevel=0)
Create a chunked dataset with an empty extendable dataspace using chunking and set the desired level ...
bool CreateExternalLink(hid_t group, const char *filename, const char *source, const char *targetLink)
Create an external link to the real group containing the block dataset.
bool AddFieldDataSizeValueToDataset(hid_t dataset, int *value, int size, bool offset)
Add a 2D value of integer type to an existing dataspace which represents the FieldDataSize.
bool AddArrayToDataset(hid_t dataset, vtkAbstractArray *dataArray, int trim=0)
Append a full data array at the end of an existing infinite dataspace.
bool CreateSoftLink(hid_t group, const char *groupName, const char *targetLink)
Create a soft link to the real group containing the block dataset.
vtkHDF::ScopedH5DHandle CreateChunkedHdfDataset(hid_t group, const char *name, hid_t type, hid_t dataspace, hsize_t numCols, hsize_t chunkSize[], int compressionLevel=0)
Create a chunked dataset in the given group from a dataspace.
bool AddSingleValueToDataset(hid_t dataset, int value, bool offset, bool trim=false)
Add a single value of integer type to an existing dataspace.
void CloseFile()
Close currently handled file, open using CreateFile or OpenFile.
vtkHDF::ScopedH5SHandle CreateUnlimitedSimpleDataspace(hsize_t numCols)
Create an unlimited HDF dataspace with a dimension of 0 * numCols.
std::vector< PolyDataTopos > GetCellArraysForTopos(vtkPolyData *polydata)
Get the cell array for the POLY_DATA_TOPOS.
bool CreateStepsGroup(hid_t group)
Create the steps group in the given group.
bool WriteHeader(hid_t group, const char *hdfType)
Write version and type attributes to the root group A root must be open for the operation to succeed ...
std::string GetGroupName(hid_t group)
Return the name of a group given its id.
void SetSubFilesReady(bool status)
Inform the implementation that all the data has been written in subfiles, and that the virtual datase...
vtkHDF::ScopedH5SHandle CreateSimpleDataspace(int rank, const hsize_t dimensions[])
Create a HDF dataspace It is simple (not scalar or null) which means that it is an array of elements ...
vtkHDF::ScopedH5DHandle CreateHdfDataset(hid_t group, const char *name, hid_t type, hid_t dataspace)
Create a dataset in the given group from a dataspace Returned scoped handle may be invalid.
bool CreateVirtualDataset(hid_t group, const char *name, hid_t type, int numComp)
Create a virtual dataset from all the subfiles that have been added.
bool OpenSubfile(const std::string &filename)
Open subfile where data has already been written, and needs to be referenced by the main file using v...
bool WriteSumStepsPolyData(hid_t group, const char *name)
For temporal multi-piece meta-files, write the dataset name in group group, which must be the "steps"...
Writes input dataset to a VTKHDF file.
concrete dataset represents vertices, lines, polygons, and triangle strips
Stores a group name and the corresponding cell array.
boost::graph_traits< vtkGraph * >::vertex_descriptor source(boost::graph_traits< vtkGraph * >::edge_descriptor e, vtkGraph *)
@ Cells
A cell specified by degrees of freedom held in arrays.
int64_t hid_t