VTK  9.4.20241222
vtkPKdTree.h
Go to the documentation of this file.
1// SPDX-FileCopyrightText: Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
2// SPDX-FileCopyrightText: Copyright (c) Sandia Corporation
3// SPDX-License-Identifier: BSD-3-Clause
4
28#ifndef vtkPKdTree_h
29#define vtkPKdTree_h
30
31#include "vtkFiltersParallelModule.h" // For export macro
32#include "vtkKdTree.h"
33#include <string> // Instead of using char*
34#include <vector> // For automatic array memory management
35
36VTK_ABI_NAMESPACE_BEGIN
38class vtkCommunicator;
39class vtkSubGroup;
40class vtkIntArray;
41class vtkKdNode;
42
43class VTKFILTERSPARALLEL_EXPORT vtkPKdTree : public vtkKdTree
44{
45public:
46 vtkTypeMacro(vtkPKdTree, vtkKdTree);
47
48 void PrintSelf(ostream& os, vtkIndent indent) override;
49 void PrintTiming(ostream& os, vtkIndent indent) override;
50 void PrintTables(ostream& os, vtkIndent indent);
51
52 static vtkPKdTree* New();
53
60 void BuildLocator() override;
61
67 vtkIdType GetTotalNumberOfCells() { return this->TotalNumCells; }
68
78
88
90
94 vtkGetObjectMacro(Controller, vtkMultiProcessController);
96
98
107 vtkGetMacro(RegionAssignment, int);
109
110 static const int NoRegionAssignment;
111 static const int ContiguousAssignment;
112 static const int UserDefinedAssignment;
113 static const int RoundRobinAssignment;
114
120 int AssignRegions(int* map, int numRegions);
121
128
138
143 const int* GetRegionAssignmentMap() { return this->RegionAssignmentMap.data(); }
144
146
149 int GetRegionAssignmentMapLength() { return static_cast<int>(this->RegionAssignmentMap.size()); }
151
157 int GetRegionAssignmentList(int procId, vtkIntArray* list);
158
167 void GetAllProcessesBorderingOnPoint(float x, float y, float z, vtkIntArray* list);
168
172 int GetProcessAssignedToRegion(int regionId);
173
178 int HasData(int processId, int regionId);
179
184 int GetProcessCellCountForRegion(int processId, int regionId);
185
190 int GetTotalProcessesInRegion(int regionId);
191
197 int GetProcessListForRegion(int regionId, vtkIntArray* processes);
198
206 int GetProcessesCellCountForRegion(int regionId, int* count, int len);
207
212 int GetTotalRegionsForProcess(int processId);
213
218 int GetRegionListForProcess(int processId, vtkIntArray* regions);
219
227 int GetRegionsCellCountForProcess(int ProcessId, int* count, int len);
228
230
256 int ProcessId, int set, vtkIdList* inRegionCells, vtkIdList* onBoundaryCells);
258 int ProcessId, vtkDataSet* set, vtkIdList* inRegionCells, vtkIdList* onBoundaryCells);
260 int ProcessId, vtkIdList* inRegionCells, vtkIdList* onBoundaryCells);
262
271 const double directionOfProjection[3], vtkIntArray* orderedList);
272
280 int ViewOrderAllProcessesFromPosition(const double cameraPosition[3], vtkIntArray* orderedList);
281
290 int GetCellArrayGlobalRange(const char* name, float range[2]);
291 int GetPointArrayGlobalRange(const char* name, float range[2]);
292 int GetCellArrayGlobalRange(const char* name, double range[2]);
293 int GetPointArrayGlobalRange(const char* name, double range[2]);
294
295 int GetCellArrayGlobalRange(int arrayIndex, double range[2]);
296 int GetPointArrayGlobalRange(int arrayIndex, double range[2]);
297 int GetCellArrayGlobalRange(int arrayIndex, float range[2]);
298 int GetPointArrayGlobalRange(int arrayIndex, float range[2]);
299
300protected:
302 ~vtkPKdTree() override;
303
305 int MultiProcessBuildLocator(double* bounds);
306
307private:
308 int RegionAssignment;
309
310 vtkMultiProcessController* Controller;
311
312 vtkSubGroup* SubGroup;
313
314 void StrDupWithNew(const char* s, std::string& output);
315
316 int NumProcesses;
317 int MyId;
318
319 // basic tables - each region is the responsibility of one process, but
320 // one process may be assigned many regions
321
322 std::vector<int> RegionAssignmentMap; // indexed by region ID
323 std::vector<std::vector<int>> ProcessAssignmentMap; // indexed by process ID
324 std::vector<int> NumRegionsAssigned; // indexed by process ID
325
326 int UpdateRegionAssignment();
327
328 // basic tables reflecting the data that was read from disk
329 // by each process
330
331 std::vector<char> DataLocationMap; // by process, by region
332
333 std::vector<int> NumProcessesInRegion; // indexed by region ID
334 std::vector<std::vector<int>> ProcessList; // indexed by region ID
335
336 std::vector<int> NumRegionsInProcess; // indexed by process ID
337 std::vector<std::vector<int>> ParallelRegionList; // indexed by process ID
338
339 std::vector<std::vector<vtkIdType>> CellCountList; // indexed by region ID
340
341 std::vector<double> CellDataMin; // global range for data arrays
342 std::vector<double> CellDataMax;
343 std::vector<double> PointDataMin;
344 std::vector<double> PointDataMax;
345 std::vector<std::string> CellDataName;
346 std::vector<std::string> PointDataName;
347 int NumCellArrays;
348 int NumPointArrays;
349
350 // distribution of indices for select operation
351
352 int BuildGlobalIndexLists(vtkIdType ncells);
353
354 std::vector<vtkIdType> StartVal;
355 std::vector<vtkIdType> EndVal;
356 std::vector<vtkIdType> NumCells;
357 vtkIdType TotalNumCells;
358
359 // local share of points to be partitioned, and local cache
360
361 int WhoHas(int pos);
362 int _whoHas(int L, int R, int pos);
363 float* GetLocalVal(int pos);
364 float* GetLocalValNext(int pos);
365 void SetLocalVal(int pos, float* val);
366 void ExchangeVals(int pos1, int pos2);
367 void ExchangeLocalVals(int pos1, int pos2);
368
369 // keep PtArray and PtArray2 as dynamically allocated since it's set as a return
370 // value from parent class method
371 float* PtArray;
372 float* PtArray2;
373 float* CurrentPtArray; // just pointer to other memory but never allocated
374 float* NextPtArray; // just pointer to other memory but never allocated
375 int PtArraySize;
376
377 std::vector<int> SelectBuffer;
378
379 // Parallel build of k-d tree
380
381 int AllCheckForFailure(int rc, const char* where, const char* how);
382 void AllCheckParameters();
383
385
389 bool VolumeBounds(double*);
390 int DivideRegion(vtkKdNode* kd, int L, int level, int tag);
391 int BreadthFirstDivide(double* bounds);
392 void enQueueNode(vtkKdNode* kd, int L, int level, int tag);
394
395 int Select(int dim, int L, int R);
396 void _select(int L, int R, int K, int dim);
397 void DoTransfer(int from, int to, int fromIndex, int toIndex, int count);
398
399 int* PartitionAboutMyValue(int L, int R, int K, int dim);
400 int* PartitionAboutOtherValue(int L, int R, float T, int dim);
401 int* PartitionSubArray(int L, int R, int K, int dim, int p1, int p2);
402
403 int CompleteTree();
404#ifdef YIELDS_INCONSISTENT_REGION_BOUNDARIES
405 void RetrieveData(vtkKdNode* kd, int* buf);
406#else
407 void ReduceData(vtkKdNode* kd, int* sources);
408 void BroadcastData(vtkKdNode* kd);
409#endif
410
411 void GetDataBounds(int L, int K, int R, float dataBounds[12]);
412 void GetLocalMinMax(int L, int R, int me, float* min, float* max);
413
414 static int FillOutTree(vtkKdNode* kd, int level);
415 static int ComputeDepth(vtkKdNode* kd);
416 static void PackData(vtkKdNode* kd, double* data);
417 static void UnpackData(vtkKdNode* kd, double* data);
418 static void CheckFixRegionBoundaries(vtkKdNode* tree);
419
420 // list management
421
422 int AllocateDoubleBuffer();
423 void FreeDoubleBuffer();
424 void SwitchDoubleBuffer();
425 void AllocateSelectBuffer();
426 void FreeSelectBuffer();
427
428 void InitializeGlobalIndexLists();
429 void AllocateAndZeroGlobalIndexLists();
430 void FreeGlobalIndexLists();
431 void InitializeRegionAssignmentLists();
432 void AllocateAndZeroRegionAssignmentLists();
433 void FreeRegionAssignmentLists();
434 void InitializeProcessDataLists();
435 void AllocateAndZeroProcessDataLists();
436 void FreeProcessDataLists();
437 void InitializeFieldArrayMinMax();
438 void AllocateAndZeroFieldArrayMinMax();
439 void FreeFieldArrayMinMax();
440
441 void ReleaseTables();
442
443 // Assigning regions to processors
444
445 void AddProcessRegions(int procId, vtkKdNode* kd);
446 void BuildRegionListsForProcesses();
447
448 // Gather process/region data totals
449
450 bool CollectLocalRegionProcessData(std::vector<int>&); // returns false for failure
451 int BuildRegionProcessTables();
452 int BuildFieldArrayMinMax();
453 void AddEntry(int* list, int len, int id);
454#ifdef VTK_USE_64BIT_IDS
455 void AddEntry(vtkIdType* list, int len, vtkIdType id);
456#endif
457 static int BinarySearch(vtkIdType* list, int len, vtkIdType which);
458
459 static int FindNextLocalArrayIndex(
460 const char* n, const std::vector<std::string>& names, int len, int start = 0);
461
462 vtkPKdTree(const vtkPKdTree&) = delete;
463 void operator=(const vtkPKdTree&) = delete;
464};
465
466VTK_ABI_NAMESPACE_END
467#endif
Used to send/receive messages in a multiprocess environment.
abstract class to specify dataset behavior
Definition vtkDataSet.h:165
list of point or cell ids
Definition vtkIdList.h:133
a simple class to control print indentation
Definition vtkIndent.h:108
dynamic, self-adjusting array of int
This class represents a single spatial region in an 3D axis aligned binary spatial partitioning.
Definition vtkKdNode.h:32
a Kd-tree spatial decomposition of a set of points
Definition vtkKdTree.h:117
int DivideRegion(vtkKdNode *kd, float *c1, int *ids, int nlevels)
static int Select(int dim, float *c1, int *ids, int nvals, double &coord)
void operator=(const vtkKdTree &)=delete
Multiprocessing communication superclass.
Build a k-d tree decomposition of a list of points.
Definition vtkPKdTree.h:44
int ViewOrderAllProcessesFromPosition(const double cameraPosition[3], vtkIntArray *orderedList)
Return a list of all processes in order from front to back given a camera position.
vtkIdType GetTotalNumberOfCells()
Get the total number of cells distributed across the data files read by all processes.
Definition vtkPKdTree.h:67
void PrintTiming(ostream &os, vtkIndent indent) override
Print timing of k-d tree build.
int GetCellArrayGlobalRange(const char *name, float range[2])
An added feature of vtkPKdTree is that it will calculate the the global range of field arrays across ...
int GetPointArrayGlobalRange(const char *name, float range[2])
void BuildLocator() override
Build the spatial decomposition.
int CreateProcessCellCountData()
Create tables of counts of cells per process per region.
static const int ContiguousAssignment
Definition vtkPKdTree.h:111
int GetPointArrayGlobalRange(int arrayIndex, double range[2])
int GetTotalProcessesInRegion(int regionId)
Returns the total number of processes that have data falling within this spatial region.
int GetRegionsCellCountForProcess(int ProcessId, int *count, int len)
Writes to the supplied integer array the number of cells this process has for each region.
int GetRegionAssignmentMapLength()
/ Returns the number of regions in the region assignment map.
Definition vtkPKdTree.h:149
int AssignRegionsContiguous()
Let the PKdTree class assign a process to each region by assigning contiguous sets of spatial regions...
int MultiProcessBuildLocator(double *bounds)
int GetRegionListForProcess(int processId, vtkIntArray *regions)
Adds the region IDs for which this process has data to the supplied vtkIntArray.
void SetController(vtkMultiProcessController *c)
Set/Get the communicator object.
int GetCellArrayGlobalRange(int arrayIndex, float range[2])
int GetRegionAssignmentList(int procId, vtkIntArray *list)
Writes the list of region IDs assigned to the specified process.
static vtkPKdTree * New()
int GetPointArrayGlobalRange(const char *name, double range[2])
vtkIdType GetCellListsForProcessRegions(int ProcessId, vtkDataSet *set, vtkIdList *inRegionCells, vtkIdList *onBoundaryCells)
After regions have been assigned to processes, I may want to know which cells I have that are in the ...
int ViewOrderAllProcessesInDirection(const double directionOfProjection[3], vtkIntArray *orderedList)
Return a list of all processes in order from front to back given a vector direction of projection.
int AssignRegions(int *map, int numRegions)
Assign spatial regions to processes via a user defined map.
void PrintTables(ostream &os, vtkIndent indent)
int HasData(int processId, int regionId)
Returns 1 if the process has data for the given region, 0 otherwise.
int GetProcessCellCountForRegion(int processId, int regionId)
Returns the number of cells the specified process has in the specified region.
int GetTotalRegionsForProcess(int processId)
Returns the total number of spatial regions that a given process has data for.
int GetProcessesCellCountForRegion(int regionId, int *count, int len)
Writes the number of cells each process has for the region to the supplied list of length len.
int GetPointArrayGlobalRange(int arrayIndex, float range[2])
void SingleProcessBuildLocator()
int GetCellArrayGlobalRange(const char *name, double range[2])
static const int UserDefinedAssignment
Definition vtkPKdTree.h:112
~vtkPKdTree() override
static const int RoundRobinAssignment
Definition vtkPKdTree.h:113
vtkIdType GetCellListsForProcessRegions(int ProcessId, vtkIdList *inRegionCells, vtkIdList *onBoundaryCells)
After regions have been assigned to processes, I may want to know which cells I have that are in the ...
static const int NoRegionAssignment
Definition vtkPKdTree.h:110
const int * GetRegionAssignmentMap()
Returns the region assignment map where index is the region and value is the processes id for that re...
Definition vtkPKdTree.h:143
int GetProcessAssignedToRegion(int regionId)
Returns the ID of the process assigned to the region.
void GetAllProcessesBorderingOnPoint(float x, float y, float z, vtkIntArray *list)
The k-d tree spatial regions have been assigned to processes.
int GetCellArrayGlobalRange(int arrayIndex, double range[2])
int AssignRegionsRoundRobin()
Let the PKdTree class assign a process to each region in a round robin fashion.
int CreateGlobalDataArrayBounds()
A convenience function which compiles the global bounds of the data arrays across processes.
int GetProcessListForRegion(int regionId, vtkIntArray *processes)
Adds the list of processes having data for the given region to the supplied list, returns the number ...
vtkIdType GetCellListsForProcessRegions(int ProcessId, int set, vtkIdList *inRegionCells, vtkIdList *onBoundaryCells)
After regions have been assigned to processes, I may want to know which cells I have that are in the ...
void PrintSelf(ostream &os, vtkIndent indent) override
Methods invoked by print to print information about the object including superclasses.
scalable collective communication for a subset of members of a parallel VTK application
Definition vtkSubGroup.h:38
int vtkIdType
Definition vtkType.h:315
#define max(a, b)