VTK  9.3.20240422
vtkPStructuredGridConnectivity.h
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1// SPDX-FileCopyrightText: Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
2// SPDX-License-Identifier: BSD-3-Clause
22#ifndef vtkPStructuredGridConnectivity_h
23#define vtkPStructuredGridConnectivity_h
24
25// VTK include directives
26#include "vtkFiltersParallelGeometryModule.h" // For export macro
27#include "vtkMPICommunicator.h" // Needed for vtkMPICommunicator::Request
29
30// C++ include directives
31#include <vector> // For STL vector
32
33// Forward declarations
34VTK_ABI_NAMESPACE_BEGIN
38// class vtkMPICommunicator::Request;
39
40class VTKFILTERSPARALLELGEOMETRY_EXPORT vtkPStructuredGridConnectivity
42{
43public:
46 void PrintSelf(ostream& os, vtkIndent indent) override;
47
49
53 vtkGetObjectMacro(Controller, vtkMultiProcessController);
55
59 void SetNumberOfGrids(unsigned int N) override;
60
64 void RegisterGrid(int gridID, int extents[6], vtkUnsignedCharArray* nodesGhostArray,
65 vtkUnsignedCharArray* cellGhostArray, vtkPointData* pointData, vtkCellData* cellData,
66 vtkPoints* gridNodes) override;
67
72 int GetNumberOfLocalGrids() { return static_cast<int>(this->GridIds.size()); }
73
80 int GetGridRank(int gridID);
81
85 bool IsGridRemote(int gridID);
86
90 bool IsGridLocal(int gridID);
91
97 void Initialize();
98
104 void ComputeNeighbors() override;
105
110 void CreateGhostLayers(int N = 1) override;
111
112protected:
115
117 int Rank;
119
120 std::vector<int> GridRanks; // Corresponding rank for each grid
121 std::vector<int> GridIds; // List of GridIds, owned by this process
122
123 // Data structures to store the remote ghost data of each grid for each one
124 // of its neighbors. The first index is the global grid index. The second
125 // is the neighbor index.
126 std::vector<std::vector<vtkPoints*>> RemotePoints;
127 std::vector<std::vector<vtkPointData*>> RemotePointData;
128 std::vector<std::vector<vtkCellData*>> RemoteCellData;
129
130 // Data structures to store the send/receive buffer sizes and corresponding
131 // persistent buffers. The first index is the global grid index. The second
132 // index is the neighbor index for the given grid.
133 std::vector<std::vector<unsigned int>> SendBufferSizes;
134 std::vector<std::vector<unsigned int>> RcvBufferSizes;
135 std::vector<std::vector<unsigned char*>> SendBuffers;
136 std::vector<std::vector<unsigned char*>> RcvBuffers;
137
141
142 // Array of MPI requests
144
148 bool GridExtentsAreEqual(int rhs[6], int lhs[6]);
149
153 bool HasPointData(int gridIdx);
154
158 bool HasCellData(int gridIdx);
159
163 bool HasPoints(int gridIdx);
164
168 void InitializeMessageCounters();
169
174 void ClearRemoteData();
175
179 void ClearRawBuffers();
180
185 void RegisterRemoteGrid(int gridID, int extents[6], int process);
186
191 void TransferRemoteNeighborData(int gridIdx, int nei, const vtkStructuredNeighbor& Neighbor);
192
198 void TransferGhostDataFromNeighbors(int gridID) override;
199
204
210
215 void DeserializeBufferSizesForProcess(int* buffersizes, vtkIdType N, int processId);
216
221 void SerializeBufferSizes(int*& sizesbuf, vtkIdType& N);
222
228
235
241
246 void PostSends();
247
254
261
266
271 void SerializeGhostPoints(int gridIdx, int ext[6], vtkMultiProcessStream& bytestream);
272
277
282 void SerializeFieldData(int sourceExtent[6], int targetExtent[6], vtkFieldData* fieldData,
283 vtkMultiProcessStream& bytestream);
284
289 void SerializeGhostPointData(int gridIdx, int ext[6], vtkMultiProcessStream& bytestream);
290
295 void SerializeGhostCellData(int gridIdx, int ext[6], vtkMultiProcessStream& bytestream);
296
301 void DeserializeGhostPoints(int gridIdx, int nei, int ext[6], vtkMultiProcessStream& bytestream);
302
306 void DeserializeDataArray(vtkDataArray*& dataArray, int dataType, int numberOfTuples,
307 int numberOfComponents, vtkMultiProcessStream& bytestream);
308
313 void DeserializeFieldData(int ext[6], vtkFieldData* fieldData, vtkMultiProcessStream& bytestream);
314
320 int gridIdx, int nei, int ext[6], vtkMultiProcessStream& bytestream);
321
327 int gridIdx, int nei, int ext[6], vtkMultiProcessStream& bytestream);
328
336 int sndGridID, int rcvGrid, int sndext[6], unsigned char*& buffer, unsigned int& size);
337
342 void DeserializeGhostData(int gridID, int neiListID, int neiGridIdx, int rcvext[6],
343 unsigned char* buffer, unsigned int size);
344
350
355 void SerializeGridExtents(int*& sndbuffer, vtkIdType& N);
356
361 void DeserializeGridExtentForProcess(int* rcvbuffer, vtkIdType& N, int processId);
362
363private:
365 void operator=(const vtkPStructuredGridConnectivity&) = delete;
366};
367
368//=============================================================================
369// INLINE METHODS
370//=============================================================================
371
373{
374 for (int i = 0; i < 6; ++i)
375 {
376 if (rhs[i] != lhs[i])
377 {
378 return false;
379 }
380 }
381 return true;
382}
383
384//------------------------------------------------------------------------------
386{
387 // Sanity check
388 assert("pre: grid index is out-of-bounds!" && (gridIdx >= 0) &&
389 (gridIdx < static_cast<int>(this->NumberOfGrids)));
390
391 if ((this->GridPointData[gridIdx] != nullptr) &&
392 (this->GridPointData[gridIdx]->GetNumberOfArrays() > 0))
393 {
394 return true;
395 }
396 return false;
397}
398
399//------------------------------------------------------------------------------
401{
402 // Sanity check
403 assert("pre: grid index is out-of-bounds!" && (gridIdx >= 0) &&
404 (gridIdx < static_cast<int>(this->NumberOfGrids)));
405
406 if ((this->GridCellData[gridIdx] != nullptr) &&
407 (this->GridCellData[gridIdx]->GetNumberOfArrays() > 0))
408 {
409 return true;
410 }
411 return false;
412}
413
414//------------------------------------------------------------------------------
416{
417 // Sanity check
418 assert("pre: grid index is out-of-bounds!" && (gridIdx >= 0) &&
419 (gridIdx < static_cast<int>(this->NumberOfGrids)));
420
421 if (this->GridPoints[gridIdx] != nullptr)
422 {
423 return true;
424 }
425 return false;
426}
427
428//------------------------------------------------------------------------------
430{
432}
433
434//------------------------------------------------------------------------------
436{
437 this->SendBufferSizes.clear();
438 this->RcvBufferSizes.clear();
439
440 // STEP 0: Clear send buffers
441 for (unsigned int i = 0; i < this->SendBuffers.size(); ++i)
442 {
443 for (unsigned int j = 0; j < this->SendBuffers[i].size(); ++j)
444 {
445 delete[] this->SendBuffers[i][j];
446 } // END for all neighbors
447 this->SendBuffers[i].clear();
448 } // END for all grids
449 this->SendBuffers.clear();
450
451 // STEP 1: Clear rcv buffers
452 for (unsigned int i = 0; i < this->RcvBuffers.size(); ++i)
453 {
454 for (unsigned int j = 0; j < this->RcvBuffers[i].size(); ++j)
455 {
456 delete[] this->RcvBuffers[i][j];
457 } // END for all neighbors
458 this->RcvBuffers[i].clear();
459 } // END for all grids
460 this->RcvBuffers.clear();
461}
462
463//------------------------------------------------------------------------------
465{
466 // STEP 0: Clear remote points
467 for (unsigned int i = 0; i < this->RemotePoints.size(); ++i)
468 {
469 for (unsigned int j = 0; j < this->RemotePoints[i].size(); ++j)
470 {
471 if (this->RemotePoints[i][j] != nullptr)
472 {
473 this->RemotePoints[i][j]->Delete();
474 }
475 } // END for all j
476 this->RemotePoints[i].clear();
477 } // END for all i
478 this->RemotePoints.clear();
479
480 // STEP 1: Clear remote point data
481 for (unsigned int i = 0; i < this->RemotePointData.size(); ++i)
482 {
483 for (unsigned int j = 0; j < this->RemotePointData[i].size(); ++j)
484 {
485 if (this->RemotePointData[i][j] != nullptr)
486 {
487 this->RemotePointData[i][j]->Delete();
488 }
489 } // END for all j
490 this->RemotePointData[i].clear();
491 } // END for all i
492 this->RemotePointData.clear();
493
494 // STEP 2: Clear remote cell data
495 for (unsigned int i = 0; i < this->RemoteCellData.size(); ++i)
496 {
497 for (unsigned int j = 0; j < this->RemoteCellData[i].size(); ++j)
498 {
499 if (this->RemoteCellData[i][j] != nullptr)
500 {
501 this->RemoteCellData[i][j]->Delete();
502 }
503 } // END for all j
504 this->RemoteCellData[i].clear();
505 }
506 this->RemoteCellData.clear();
507}
508
509//------------------------------------------------------------------------------
511{
512 return (!this->IsGridLocal(gridID));
513}
514
515//------------------------------------------------------------------------------
517{
518 assert("pre: Instance has not been initialized!" && this->Initialized);
519 assert("pre: gridID is out-of-bounds" && (gridID >= 0) &&
520 (gridID < static_cast<int>(this->NumberOfGrids)));
521 assert(
522 "pre: GridRanks is not properly allocated" && this->NumberOfGrids == this->GridRanks.size());
523 return ((this->GridRanks[gridID] == this->Rank));
524}
525
526//------------------------------------------------------------------------------
528{
529 assert("pre: Instance has not been initialized!" && this->Initialized);
530 assert("pre: gridID out-of-bounds!" &&
531 (gridID >= 0 && gridID < static_cast<int>(this->NumberOfGrids)));
532 return (this->GridRanks[gridID]);
533}
534VTK_ABI_NAMESPACE_END
535#endif /* vtkPStructuredGridConnectivity_h */
std::vector< vtkCellData * > GridCellData
std::vector< vtkPointData * > GridPointData
std::vector< vtkPoints * > GridPoints
represent and manipulate cell attribute data
abstract superclass for arrays of numeric data
represent and manipulate fields of data
a simple class to control print indentation
Definition vtkIndent.h:108
Process communication using MPI.
Multiprocessing communication superclass.
stream used to pass data across processes using vtkMultiProcessController.
vtkPStructuredGridConnectivity inherits from vtkStructuredGridConnectivity and implements functionali...
int GetNumberOfLocalGrids()
Returns the number of local grids registers by the process that owns the current vtkPStructuredGridCo...
~vtkPStructuredGridConnectivity() override
std::vector< std::vector< unsigned int > > RcvBufferSizes
void TransferRemoteNeighborData(int gridIdx, int nei, const vtkStructuredNeighbor &Neighbor)
This method transfers all the remote neighbor data to the ghosted grid instance of the grid correspon...
void DeserializeDataArray(vtkDataArray *&dataArray, int dataType, int numberOfTuples, int numberOfComponents, vtkMultiProcessStream &bytestream)
Helper method to deserialize the data array from a bytestream.
virtual void SetController(vtkMultiProcessController *)
Set & Get the process controller.
bool GridExtentsAreEqual(int rhs[6], int lhs[6])
Returns true if the two extents are equal, otherwise false.
bool IsGridLocal(int gridID)
Returns true iff the grid corresponding to the given gridID is local.
void DeserializeGhostPointData(int gridIdx, int nei, int ext[6], vtkMultiProcessStream &bytestream)
Helper method to de-serialize the ghost point data received from a remote process.
void PrintSelf(ostream &os, vtkIndent indent) override
Methods invoked by print to print information about the object including superclasses.
void SetNumberOfGrids(unsigned int N) override
Sets the total number of domains distributed among processors.
static vtkPStructuredGridConnectivity * New()
void SerializeDataArray(vtkDataArray *dataArray, vtkMultiProcessStream &bytestream)
Serializes the data array into a bytestream.
void DeserializeFieldData(int ext[6], vtkFieldData *fieldData, vtkMultiProcessStream &bytestream)
Helper method to de-serialize field data.
void RegisterRemoteGrid(int gridID, int extents[6], int process)
Registers a remote grid with the given grid Id, structured extents and process.
void ClearRawBuffers()
Clears all raw send/rcv buffers.
void SerializeGhostCellData(int gridIdx, int ext[6], vtkMultiProcessStream &bytestream)
Helper method to serialize ghost cell data.
void ExchangeGhostDataPost()
Helper method for exchanging ghost data.
void DeserializeGhostPoints(int gridIdx, int nei, int ext[6], vtkMultiProcessStream &bytestream)
Helper method to de-serialize the ghost points received from a remote process.
bool HasPoints(int gridIdx)
Returns true iff the grid corresponding to the given ID has points.
std::vector< std::vector< unsigned char * > > SendBuffers
bool IsGridRemote(int gridID)
Returns true iff the grid is remote, otherwise false.
std::vector< std::vector< vtkPoints * > > RemotePoints
int GetGridRank(int gridID)
Returns the rank of the given gridID.
void ExchangeGhostData()
Exchanges ghost data of the grids owned by this process.
void CreateGhostLayers(int N=1) override
Creates ghost layers on the grids owned by this process using data from both local and remote block n...
void SerializeGhostPoints(int gridIdx, int ext[6], vtkMultiProcessStream &bytestream)
Helper method to serialize the ghost points to send to a remote process.
void PostSends()
Helper method to communicate ghost data.
void CommunicateGhostData()
Helper method for exchanging ghost data.
bool HasCellData(int gridIdx)
Returns true iff the grid corresponding to the given ID has cell data.
void DeserializeGhostCellData(int gridIdx, int nei, int ext[6], vtkMultiProcessStream &bytestream)
Helper method to de-serialize the ghost cell data received from a remote process.
void SerializeGhostData(int sndGridID, int rcvGrid, int sndext[6], unsigned char *&buffer, unsigned int &size)
Given a grid ID and the corresponding send extent, this method serializes the grid and data within th...
void TransferGhostDataFromNeighbors(int gridID) override
This method transfers the fields (point data and cell data) to the ghost extents from the neighboring...
void ExchangeGridExtents()
Exchanges the grid extents among all processes and fully populates the GridExtents vector.
void DeserializeBufferSizesForProcess(int *buffersizes, vtkIdType N, int processId)
Helper method to deserialize the buffer sizes coming from the given process.
void ClearRemoteData()
Clears all internal VTK data-structures that are used to store the remote ghost data.
void PackGhostData()
Helper method to pack all the ghost data into send buffers.
void ExchangeBufferSizes()
Helper method to exchange buffer sizes.Each process sends the send buffer size of each grid to each o...
void UnpackGhostData()
Helper method to unpack the raw ghost data from the receive buffers in to the VTK remote point data-s...
void SerializeGridExtents(int *&sndbuffer, vtkIdType &N)
Serializes the grid extents and information in a buffer to send over MPI The data is serialized as fo...
void RegisterGrid(int gridID, int extents[6], vtkUnsignedCharArray *nodesGhostArray, vtkUnsignedCharArray *cellGhostArray, vtkPointData *pointData, vtkCellData *cellData, vtkPoints *gridNodes) override
See vtkStructuredGridConnectivity::RegisterGrid.
void SerializeBufferSizes(int *&sizesbuf, vtkIdType &N)
Helper method to serialize the buffer sizes for the grids of this process to neighboring grids.
void DeserializeGhostData(int gridID, int neiListID, int neiGridIdx, int rcvext[6], unsigned char *buffer, unsigned int size)
Given the raw buffer consisting of ghost data, this method deserializes the object and returns the gr...
bool HasPointData(int gridIdx)
Returns true iff the grid corresponding to the given ID has point data.
std::vector< std::vector< unsigned int > > SendBufferSizes
void ExchangeGhostDataInit()
Helper method for exchanging ghost data.
std::vector< std::vector< vtkCellData * > > RemoteCellData
void SerializeFieldData(int sourceExtent[6], int targetExtent[6], vtkFieldData *fieldData, vtkMultiProcessStream &bytestream)
Helper method to serialize field data.
void ComputeNeighbors() override
Computes the neighboring topology of a distributed structured grid data-set.
void PostReceives()
Helper method to communicate ghost data.
void Initialize()
Initializes this instance of vtkPStructuredGridConnectivity, essentially, the acquires the local proc...
void DeserializeGridExtentForProcess(int *rcvbuffer, vtkIdType &N, int processId)
Deserializes the received grid extent information to the GridExtents internal data-structures.
void SerializeGhostPointData(int gridIdx, int ext[6], vtkMultiProcessStream &bytestream)
Helper method to serialize ghost point data.
void InitializeMessageCounters()
Sets all message counters to 0.
std::vector< std::vector< vtkPointData * > > RemotePointData
std::vector< std::vector< unsigned char * > > RcvBuffers
represent and manipulate point attribute data
represent and manipulate 3D points
Definition vtkPoints.h:139
vtkStructuredGridConnectivity is a concrete instance of vtkObject that implements functionality for c...
An internal, light-weight class used to store neighbor information.
dynamic, self-adjusting array of unsigned char
int vtkIdType
Definition vtkType.h:315