A reader for MNI tag files. More...

#include <vtkMNITagPointReader.h>

Inheritance diagram for vtkMNITagPointReader:

Collaboration diagram for vtkMNITagPointReader:

Public Types
typedef vtkPolyDataAlgorithm	Superclass

Public Types inherited from vtkPolyDataAlgorithm
typedef vtkAlgorithm	Superclass

Public Types inherited from vtkAlgorithm
typedef vtkObject	Superclass

enum	DesiredOutputPrecision { SINGLE_PRECISION, DOUBLE_PRECISION, DEFAULT_PRECISION }

Public Types inherited from vtkObject
typedef vtkObjectBase	Superclass

Public Member Functions
virtual int	IsA (const char *type)

vtkMNITagPointReader *	NewInstance () const

virtual void	PrintSelf (ostream &os, vtkIndent indent)

virtual int	CanReadFile (const char *name)

virtual int	GetNumberOfVolumes ()

virtual vtkStringArray *	GetLabelText ()

virtual vtkDoubleArray *	GetWeights ()

virtual vtkIntArray *	GetStructureIds ()

virtual vtkIntArray *	GetPatientIds ()

virtual const char *	GetComments ()


virtual void	SetFileName (const char *)

virtual char *	GetFileName ()


virtual const char *	GetFileExtensions ()


virtual const char *	GetDescriptiveName ()


virtual vtkPoints *	GetPoints (int port)

virtual vtkPoints *	GetPoints ()

Public Member Functions inherited from vtkPolyDataAlgorithm
vtkPolyDataAlgorithm *	NewInstance () const

vtkDataObject *	GetInput ()

vtkDataObject *	GetInput (int port)

vtkPolyData *	GetPolyDataInput (int port)

vtkPolyData *	GetOutput ()

vtkPolyData *	GetOutput (int)

virtual void	SetOutput (vtkDataObject *d)

virtual int	ProcessRequest (vtkInformation , vtkInformationVector , vtkInformationVector )

void	SetInputData (vtkDataObject *)

void	SetInputData (int, vtkDataObject *)

void	AddInputData (vtkDataObject *)

void	AddInputData (int, vtkDataObject *)

Public Member Functions inherited from vtkAlgorithm
vtkAlgorithm *	NewInstance () const

int	HasExecutive ()

vtkExecutive *	GetExecutive ()

virtual void	SetExecutive (vtkExecutive *executive)

virtual int	ModifyRequest (vtkInformation *request, int when)

vtkInformation *	GetInputPortInformation (int port)

vtkInformation *	GetOutputPortInformation (int port)

int	GetNumberOfInputPorts ()

int	GetNumberOfOutputPorts ()

void	UpdateProgress (double amount)

vtkInformation *	GetInputArrayInformation (int idx)

void	RemoveAllInputs ()

vtkDataObject *	GetOutputDataObject (int port)

virtual void	RemoveInputConnection (int port, vtkAlgorithmOutput *input)

virtual void	RemoveInputConnection (int port, int idx)

virtual void	RemoveAllInputConnections (int port)

int	GetNumberOfInputConnections (int port)

int	GetTotalNumberOfInputConnections ()

vtkAlgorithmOutput *	GetInputConnection (int port, int index)

vtkAlgorithm *	GetInputAlgorithm (int port, int index, int &algPort)

vtkAlgorithm *	GetInputAlgorithm (int port, int index)

vtkExecutive *	GetInputExecutive (int port, int index)

vtkInformation *	GetInputInformation (int port, int index)

vtkInformation *	GetOutputInformation (int port)

virtual void	UpdateInformation ()

virtual void	UpdateDataObject ()

virtual void	PropagateUpdateExtent ()

virtual void	UpdateWholeExtent ()

void	ConvertTotalInputToPortConnection (int ind, int &port, int &conn)

int	SetUpdateExtentToWholeExtent (int port)

int	SetUpdateExtentToWholeExtent ()

void	SetUpdateExtent (int port, int extent[6])

int	ProcessRequest (vtkInformation request, vtkCollection inInfo, vtkInformationVector *outInfo)

virtual int	ComputePipelineMTime (vtkInformation request, vtkInformationVector inInfoVec, vtkInformationVector outInfoVec, int requestFromOutputPort, unsigned long *mtime)

virtual vtkInformation *	GetInformation ()

virtual void	SetInformation (vtkInformation *)

virtual void	Register (vtkObjectBase *o)

virtual void	UnRegister (vtkObjectBase *o)

virtual void	SetAbortExecute (int)

virtual int	GetAbortExecute ()

virtual void	AbortExecuteOn ()

virtual void	AbortExecuteOff ()

virtual void	SetProgress (double)

virtual double	GetProgress ()

void	SetProgressText (const char *ptext)

virtual char *	GetProgressText ()

virtual unsigned long	GetErrorCode ()

virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, const char *name)

virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, int fieldAttributeType)

virtual void	SetInputArrayToProcess (int idx, vtkInformation *info)

virtual void	SetInputArrayToProcess (int idx, int port, int connection, const char fieldAssociation, const char attributeTypeorName)

vtkDataObject *	GetInputDataObject (int port, int connection)

virtual void	SetInputConnection (int port, vtkAlgorithmOutput *input)

virtual void	SetInputConnection (vtkAlgorithmOutput *input)

virtual void	AddInputConnection (int port, vtkAlgorithmOutput *input)

virtual void	AddInputConnection (vtkAlgorithmOutput *input)

virtual void	SetInputDataObject (int port, vtkDataObject *data)

virtual void	SetInputDataObject (vtkDataObject *data)

virtual void	AddInputDataObject (int port, vtkDataObject *data)

virtual void	AddInputDataObject (vtkDataObject *data)

vtkAlgorithmOutput *	GetOutputPort (int index)

vtkAlgorithmOutput *	GetOutputPort ()

vtkAlgorithm *	GetInputAlgorithm ()

vtkExecutive *	GetInputExecutive ()

vtkInformation *	GetInputInformation ()

virtual void	Update (int port)

virtual void	Update ()

virtual void	SetReleaseDataFlag (int)

virtual int	GetReleaseDataFlag ()

void	ReleaseDataFlagOn ()

void	ReleaseDataFlagOff ()

int	UpdateExtentIsEmpty (vtkInformation pinfo, vtkDataObject output)

int	UpdateExtentIsEmpty (vtkInformation *pinfo, int extentType)

void	SetUpdateExtent (int port, int piece, int numPieces, int ghostLevel)

void	SetUpdateExtent (int piece, int numPieces, int ghostLevel)

void	SetUpdateExtent (int extent[6])

int *	GetUpdateExtent ()

int *	GetUpdateExtent (int port)

void	GetUpdateExtent (int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)

void	GetUpdateExtent (int port, int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)

void	GetUpdateExtent (int extent[6])

void	GetUpdateExtent (int port, int extent[6])

int	GetUpdatePiece ()

int	GetUpdatePiece (int port)

int	GetUpdateNumberOfPieces ()

int	GetUpdateNumberOfPieces (int port)

int	GetUpdateGhostLevel ()

int	GetUpdateGhostLevel (int port)

void	SetProgressObserver (vtkProgressObserver *)

virtual vtkProgressObserver *	GetProgressObserver ()

Public Member Functions inherited from vtkObject
vtkObject *	NewInstance () const

virtual void	DebugOn ()

virtual void	DebugOff ()

bool	GetDebug ()

void	SetDebug (bool debugFlag)

virtual void	Modified ()

virtual unsigned long	GetMTime ()

unsigned long	AddObserver (unsigned long event, vtkCommand *, float priority=0.0f)

unsigned long	AddObserver (const char event, vtkCommand , float priority=0.0f)

vtkCommand *	GetCommand (unsigned long tag)

void	RemoveObserver (vtkCommand *)

void	RemoveObservers (unsigned long event, vtkCommand *)

void	RemoveObservers (const char event, vtkCommand )

int	HasObserver (unsigned long event, vtkCommand *)

int	HasObserver (const char event, vtkCommand )

void	RemoveObserver (unsigned long tag)

void	RemoveObservers (unsigned long event)

void	RemoveObservers (const char *event)

void	RemoveAllObservers ()

int	HasObserver (unsigned long event)

int	HasObserver (const char *event)

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f)

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, bool(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)

int	InvokeEvent (unsigned long event, void *callData)

int	InvokeEvent (const char event, void callData)

int	InvokeEvent (unsigned long event)

int	InvokeEvent (const char *event)

Public Member Functions inherited from vtkObjectBase
const char *	GetClassName () const

virtual void	Delete ()

virtual void	FastDelete ()

void	Print (ostream &os)

void	SetReferenceCount (int)

void	PrintRevisions (ostream &)

virtual void	PrintHeader (ostream &os, vtkIndent indent)

virtual void	PrintTrailer (ostream &os, vtkIndent indent)

int	GetReferenceCount ()

Static Public Member Functions
static int	IsTypeOf (const char *type)

static vtkMNITagPointReader *	SafeDownCast (vtkObjectBase *o)

static vtkMNITagPointReader *	New ()

Static Public Member Functions inherited from vtkPolyDataAlgorithm
static vtkPolyDataAlgorithm *	New ()

static int	IsTypeOf (const char *type)

static vtkPolyDataAlgorithm *	SafeDownCast (vtkObjectBase *o)

Static Public Member Functions inherited from vtkAlgorithm
static vtkAlgorithm *	New ()

static int	IsTypeOf (const char *type)

static vtkAlgorithm *	SafeDownCast (vtkObjectBase *o)

static vtkInformationIntegerKey *	INPUT_IS_OPTIONAL ()

static vtkInformationIntegerKey *	INPUT_IS_REPEATABLE ()

static vtkInformationInformationVectorKey *	INPUT_REQUIRED_FIELDS ()

static vtkInformationStringVectorKey *	INPUT_REQUIRED_DATA_TYPE ()

static vtkInformationInformationVectorKey *	INPUT_ARRAYS_TO_PROCESS ()

static vtkInformationIntegerKey *	INPUT_PORT ()

static vtkInformationIntegerKey *	INPUT_CONNECTION ()

static vtkInformationIntegerKey *	CAN_PRODUCE_SUB_EXTENT ()

static vtkInformationIntegerKey *	CAN_HANDLE_PIECE_REQUEST ()

static void	SetDefaultExecutivePrototype (vtkExecutive *proto)

Static Public Member Functions inherited from vtkObject
static int	IsTypeOf (const char *type)

static vtkObject *	SafeDownCast (vtkObjectBase *o)

static vtkObject *	New ()

static void	BreakOnError ()

static void	SetGlobalWarningDisplay (int val)

static void	GlobalWarningDisplayOn ()

static void	GlobalWarningDisplayOff ()

static int	GetGlobalWarningDisplay ()

Static Public Member Functions inherited from vtkObjectBase
static int	IsTypeOf (const char *name)

static vtkObjectBase *	New ()

Protected Member Functions
virtual vtkObjectBase *	NewInstanceInternal () const

	vtkMNITagPointReader ()

	~vtkMNITagPointReader ()

int	ReadLine (istream &infile, std::string &linetext, std::string::iterator &pos)

int	ReadLineAfterComments (istream &infile, std::string &linetext, std::string::iterator &pos)

int	SkipWhitespace (istream &infile, std::string &linetext, std::string::iterator &pos, int nl)

int	ParseLeftHandSide (istream &infile, std::string &linetext, std::string::iterator &pos, std::string &identifier)

int	ParseStringValue (istream &infile, std::string &linetext, std::string::iterator &pos, std::string &data)

int	ParseIntValues (istream &infile, std::string &linetext, std::string::iterator &pos, int *values, int count)

int	ParseFloatValues (istream &infile, std::string &linetext, std::string::iterator &pos, double *values, int count)

virtual int	ReadFile (vtkPolyData output1, vtkPolyData output2)

virtual int	RequestData (vtkInformation request, vtkInformationVector inInfo, vtkInformationVector outInfo)

Protected Member Functions inherited from vtkPolyDataAlgorithm
	vtkPolyDataAlgorithm ()

	~vtkPolyDataAlgorithm ()

virtual int	RequestInformation (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector)

virtual int	FillOutputPortInformation (int port, vtkInformation *info)

virtual int	FillInputPortInformation (int port, vtkInformation *info)

virtual int	RequestUpdateExtent (vtkInformation , vtkInformationVector , vtkInformationVector )

Protected Member Functions inherited from vtkAlgorithm
	vtkAlgorithm ()

	~vtkAlgorithm ()

virtual void	SetNumberOfInputPorts (int n)

virtual void	SetNumberOfOutputPorts (int n)

int	InputPortIndexInRange (int index, const char *action)

int	OutputPortIndexInRange (int index, const char *action)

int	GetInputArrayAssociation (int idx, vtkInformationVector **inputVector)

virtual vtkExecutive *	CreateDefaultExecutive ()

virtual void	ReportReferences (vtkGarbageCollector *)

virtual void	SetNumberOfInputConnections (int port, int n)

int	GetInputArrayAssociation (int idx, int connection, vtkInformationVector **inputVector)

int	GetInputArrayAssociation (int idx, vtkDataObject *input)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)

vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)

vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input, int &association)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input, int &association)

vtkInformation *	GetInputArrayFieldInformation (int idx, vtkInformationVector **inputVector)

virtual void	SetNthInputConnection (int port, int index, vtkAlgorithmOutput *input)

void	SetInputDataInternal (int port, vtkDataObject *input)

void	AddInputDataInternal (int port, vtkDataObject *input)

virtual void	SetErrorCode (unsigned long)

Protected Member Functions inherited from vtkObject
	vtkObject ()

virtual	~vtkObject ()

virtual void	RegisterInternal (vtkObjectBase *, int check)

virtual void	UnRegisterInternal (vtkObjectBase *, int check)

void	InternalGrabFocus (vtkCommand mouseEvents, vtkCommand keypressEvents=NULL)

void	InternalReleaseFocus ()

Protected Member Functions inherited from vtkObjectBase
	vtkObjectBase ()

virtual	~vtkObjectBase ()

virtual void	CollectRevisions (ostream &)

	vtkObjectBase (const vtkObjectBase &)

void	operator= (const vtkObjectBase &)

Protected Attributes
char *	FileName

int	NumberOfVolumes

int	LineNumber

char *	Comments

Protected Attributes inherited from vtkAlgorithm
vtkInformation *	Information

double	Progress

char *	ProgressText

vtkProgressObserver *	ProgressObserver

unsigned long	ErrorCode

Protected Attributes inherited from vtkObject
bool	Debug

vtkTimeStamp	MTime

vtkSubjectHelper *	SubjectHelper

Protected Attributes inherited from vtkObjectBase
vtkAtomicInt32	ReferenceCount

vtkWeakPointerBase **	WeakPointers

Additional Inherited Members
Public Attributes inherited from vtkAlgorithm
int	AbortExecute

Static Protected Member Functions inherited from vtkAlgorithm
static vtkInformationIntegerKey *	PORT_REQUIREMENTS_FILLED ()

Static Protected Attributes inherited from vtkAlgorithm
static vtkExecutive *	DefaultExecutivePrototype

Detailed Description

A reader for MNI tag files.

The MNI .tag file format is used to store labeled points, it can store either one or two point sets. All point sets must have the same number of points and they will share the same labels. This file format was developed at the McConnell Brain Imaging Centre at the Montreal Neurological Institute and is used by their software. The labels are stored as a vtkStringArray in the PointData of the output dataset, which is a vtkPolyData.

See also: vtkMINCImageReader vtkMNIObjectReader vtkMNITransformReader

Thanks:: Thanks to David Gobbi for contributing this class.

Tests:: vtkMNITagPointReader (Tests)

Definition at line 80 of file vtkMNITagPointReader.h.

Member Typedef Documentation

typedef vtkPolyDataAlgorithm vtkMNITagPointReader::Superclass

Definition at line 83 of file vtkMNITagPointReader.h.

Constructor & Destructor Documentation

vtkMNITagPointReader::vtkMNITagPointReader ( )

protected

vtkMNITagPointReader::~vtkMNITagPointReader ( )

protected

Member Function Documentation

static int vtkMNITagPointReader::IsTypeOf ( const char * type )

static

virtual int vtkMNITagPointReader::IsA ( const char * name )

virtual

Return 1 if this class is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkPolyDataAlgorithm.

static vtkMNITagPointReader* vtkMNITagPointReader::SafeDownCast ( vtkObjectBase * o )

static

virtual vtkObjectBase* vtkMNITagPointReader::NewInstanceInternal ( ) const

protectedvirtual

Reimplemented from vtkPolyDataAlgorithm.

vtkMNITagPointReader* vtkMNITagPointReader::NewInstance ( ) const

static vtkMNITagPointReader* vtkMNITagPointReader::New ( )

static

virtual void vtkMNITagPointReader::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

virtual

Methods invoked by print to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkPolyDataAlgorithm.

virtual void vtkMNITagPointReader::SetFileName ( const char * )

virtual

Set the file name.

virtual char* vtkMNITagPointReader::GetFileName ( )

virtual

Set the file name.

virtual const char* vtkMNITagPointReader::GetFileExtensions ( )

inlinevirtual

Get the entension for this file format.

Definition at line 96 of file vtkMNITagPointReader.h.

virtual const char* vtkMNITagPointReader::GetDescriptiveName ( )

inlinevirtual

Get the name of this file format.

Definition at line 102 of file vtkMNITagPointReader.h.

virtual int vtkMNITagPointReader::CanReadFile ( const char * name )

virtual

Test whether the specified file can be read.

virtual int vtkMNITagPointReader::GetNumberOfVolumes ( )

virtual

Get the number of volumes specified by the file, which will be equal to one or two. There will be an output point set for each volume, so really, this parameter just tells you the number of outputs to expect from this reader.

virtual vtkPoints* vtkMNITagPointReader::GetPoints ( int port )

virtual

Get the points. These are also provided in the first and second output ports of the reader. This method will return NULL if there is no data.

virtual vtkPoints* vtkMNITagPointReader::GetPoints ( )

inlinevirtual

Get the points. These are also provided in the first and second output ports of the reader. This method will return NULL if there is no data.

Definition at line 120 of file vtkMNITagPointReader.h.

virtual vtkStringArray* vtkMNITagPointReader::GetLabelText ( )

virtual

Get the labels. These same labels are provided in the output point sets, as the PointData data array named "LabelText". This will return NULL if there were no labels in the file.

virtual vtkDoubleArray* vtkMNITagPointReader::GetWeights ( )

virtual

Get the weights. These are also provided in the output point sets, as the PointData data array named "Weights". This will return NULL if there were no weights in the file.

virtual vtkIntArray* vtkMNITagPointReader::GetStructureIds ( )

virtual

Get the structure ids. These are also provided in the output point sets, as the PointData data array named "StructureIds". This will return NULL if there were no ids in the file.

virtual vtkIntArray* vtkMNITagPointReader::GetPatientIds ( )

virtual

Get the patient ids. These are also provided in the output point sets, as the PointData data array named "PatientIds". This will return NULL if there were no ids in the file.

virtual const char* vtkMNITagPointReader::GetComments ( )

virtual

Get any comments that are included in the file.

int vtkMNITagPointReader::ReadLine	(	istream &	infile,
		std::string &	linetext,
		std::string::iterator &	pos
	)

protected

int vtkMNITagPointReader::ReadLineAfterComments	(	istream &	infile,
		std::string &	linetext,
		std::string::iterator &	pos
	)

protected

int vtkMNITagPointReader::SkipWhitespace	(	istream &	infile,
		std::string &	linetext,
		std::string::iterator &	pos,
		int	nl
	)

protected

int vtkMNITagPointReader::ParseLeftHandSide	(	istream &	infile,
		std::string &	linetext,
		std::string::iterator &	pos,
		std::string &	identifier
	)

protected

int vtkMNITagPointReader::ParseStringValue	(	istream &	infile,
		std::string &	linetext,
		std::string::iterator &	pos,
		std::string &	data
	)

protected

int vtkMNITagPointReader::ParseIntValues	(	istream &	infile,
		std::string &	linetext,
		std::string::iterator &	pos,
		int *	values,
		int	count
	)

protected

int vtkMNITagPointReader::ParseFloatValues	(	istream &	infile,
		std::string &	linetext,
		std::string::iterator &	pos,
		double *	values,
		int	count
	)

protected

virtual int vtkMNITagPointReader::ReadFile	(	vtkPolyData *	output1,
		vtkPolyData *	output2
	)

protectedvirtual

virtual int vtkMNITagPointReader::RequestData	(	vtkInformation *	request,
		vtkInformationVector **	inputVector,
		vtkInformationVector *	outputVector
	)

protectedvirtual

This is called by the superclass. This is the method you should override.

Reimplemented from vtkPolyDataAlgorithm.

Member Data Documentation

char* vtkMNITagPointReader::FileName

protected

Definition at line 150 of file vtkMNITagPointReader.h.

int vtkMNITagPointReader::NumberOfVolumes

protected

Definition at line 151 of file vtkMNITagPointReader.h.

int vtkMNITagPointReader::LineNumber

protected

Definition at line 153 of file vtkMNITagPointReader.h.

char* vtkMNITagPointReader::Comments

protected

Definition at line 154 of file vtkMNITagPointReader.h.

The documentation for this class was generated from the following file:

/home/boeckb/code/depot/group-kitware/vtk/build-release/Utilities/Doxygen/dox/IO/MINC/vtkMNITagPointReader.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation