VTK  9.3.20240725
Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | Static Protected Member Functions | Protected Attributes | List of all members
vtkMINCImageReader Class Reference

A reader for MINC files. More...

#include <vtkMINCImageReader.h>

Inheritance diagram for vtkMINCImageReader:
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Collaboration diagram for vtkMINCImageReader:
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Public Types

typedef vtkImageReader2 Superclass
 
- Public Types inherited from vtkImageReader2
typedef vtkImageAlgorithm Superclass
 
- Public Types inherited from vtkImageAlgorithm
typedef vtkAlgorithm Superclass
 
- Public Types inherited from vtkAlgorithm
enum  DesiredOutputPrecision { SINGLE_PRECISION , DOUBLE_PRECISION , DEFAULT_PRECISION }
 Values used for setting the desired output precision for various algorithms. More...
 
typedef vtkObject Superclass
 

Public Member Functions

virtual vtkTypeBool IsA (const char *type)
 Return 1 if this class is the same type of (or a subclass of) the named class.
 
vtkMINCImageReaderNewInstance () const
 
void PrintSelf (ostream &os, vtkIndent indent) override
 Methods invoked by print to print information about the object including superclasses.
 
void SetFileName (VTK_FILEPATH const char *name) override
 Set the file name.
 
const char * GetFileExtensions () override
 Get the extension for this file format.
 
const char * GetDescriptiveName () override
 Get the name of this file format.
 
int CanReadFile (VTK_FILEPATH const char *name) override
 Test whether the specified file can be read.
 
virtual vtkMatrix4x4GetDirectionCosines ()
 Get a matrix that describes the orientation of the data.
 
virtual int GetNumberOfTimeSteps ()
 Get the number of time steps in the file.
 
virtual vtkMINCImageAttributesGetImageAttributes ()
 Get the image attributes, which contain patient information and other useful metadata.
 
virtual double GetRescaleSlope ()
 Get the slope and intercept for rescaling the scalar values to real data values.
 
virtual double GetRescaleIntercept ()
 Get the slope and intercept for rescaling the scalar values to real data values.
 
virtual void SetRescaleRealValues (vtkTypeBool)
 Rescale real data values to float.
 
virtual void RescaleRealValuesOn ()
 Rescale real data values to float.
 
virtual void RescaleRealValuesOff ()
 Rescale real data values to float.
 
virtual vtkTypeBool GetRescaleRealValues ()
 Rescale real data values to float.
 
virtual double * GetDataRange ()
 Get the scalar range of the output from the information in the file header.
 
virtual void GetDataRange (double range[2])
 Get the scalar range of the output from the information in the file header.
 
virtual void SetTimeStep (int)
 Set the time step to read.
 
virtual int GetTimeStep ()
 Set the time step to read.
 
- Public Member Functions inherited from vtkImageReader2
virtual vtkTypeBool IsA (const char *type)
 Return 1 if this class is the same type of (or a subclass of) the named class.
 
vtkImageReader2NewInstance () const
 
void PrintSelf (ostream &os, vtkIndent indent) override
 Methods invoked by print to print information about the object including superclasses.
 
virtual void SetMemoryBuffer (const void *)
 Specify the in memory image buffer.
 
virtual const void * GetMemoryBuffer ()
 
virtual void SetMemoryBufferLength (vtkIdType buflen)
 Specify the in memory image buffer length.
 
vtkIdType GetMemoryBufferLength ()
 
virtual void SetDataScalarType (int type)
 Set the data type of pixels in the file.
 
virtual void SetDataScalarTypeToFloat ()
 
virtual void SetDataScalarTypeToDouble ()
 
virtual void SetDataScalarTypeToInt ()
 
virtual void SetDataScalarTypeToUnsignedInt ()
 
virtual void SetDataScalarTypeToShort ()
 
virtual void SetDataScalarTypeToUnsignedShort ()
 
virtual void SetDataScalarTypeToChar ()
 
virtual void SetDataScalarTypeToSignedChar ()
 
virtual void SetDataScalarTypeToUnsignedChar ()
 
virtual void SetHeaderSize (unsigned long size)
 If there is a tail on the file, you want to explicitly set the header size.
 
istream * GetFile ()
 
virtual unsigned long * GetDataIncrements ()
 
virtual void GetDataIncrements (unsigned long data[4])
 
virtual int OpenFile ()
 
void CloseFile ()
 
virtual void SeekFile (int i, int j, int k)
 
virtual int CanReadFile (VTK_FILEPATH const char *vtkNotUsed(fname))
 Return non zero if the reader can read the given file name.
 
virtual const char * GetFileExtensions ()
 Get the file extensions for this format.
 
 vtkGetFilePathMacro (FileName)
 Specify file name for the image file.
 
virtual void SetFileNames (vtkStringArray *)
 Specify a list of file names.
 
virtual vtkStringArrayGetFileNames ()
 Specify a list of file names.
 
virtual void SetFilePrefix (VTK_FILEPATH const char *)
 Specify file prefix for the image file or files.
 
 vtkGetFilePathMacro (FilePrefix)
 Specify file prefix for the image file or files.
 
virtual void SetFilePattern (VTK_FILEPATH const char *)
 The snprintf-style format string used to build filename from FilePrefix and slice number.
 
 vtkGetFilePathMacro (FilePattern)
 The snprintf-style format string used to build filename from FilePrefix and slice number.
 
virtual int GetDataScalarType ()
 Get the file format.
 
virtual void SetNumberOfScalarComponents (int)
 Set/Get the number of scalar components.
 
virtual int GetNumberOfScalarComponents ()
 Set/Get the number of scalar components.
 
virtual void SetDataExtent (int, int, int, int, int, int)
 Get/Set the extent of the data on disk.
 
virtual void SetDataExtent (int[6])
 Get/Set the extent of the data on disk.
 
virtual int * GetDataExtent ()
 Get/Set the extent of the data on disk.
 
virtual void GetDataExtent (int &, int &, int &, int &, int &, int &)
 Get/Set the extent of the data on disk.
 
virtual void GetDataExtent (int[6])
 Get/Set the extent of the data on disk.
 
virtual void SetFileDimensionality (int)
 The number of dimensions stored in a file.
 
int GetFileDimensionality ()
 The number of dimensions stored in a file.
 
virtual void SetDataSpacing (double, double, double)
 Set/Get the spacing of the data in the file.
 
virtual void SetDataSpacing (double[3])
 Set/Get the spacing of the data in the file.
 
virtual double * GetDataSpacing ()
 Set/Get the spacing of the data in the file.
 
virtual void GetDataSpacing (double &, double &, double &)
 Set/Get the spacing of the data in the file.
 
virtual void GetDataSpacing (double[3])
 Set/Get the spacing of the data in the file.
 
virtual void SetDataOrigin (double, double, double)
 Set/Get the origin of the data (location of first pixel in the file).
 
virtual void SetDataOrigin (double[3])
 Set/Get the origin of the data (location of first pixel in the file).
 
virtual double * GetDataOrigin ()
 Set/Get the origin of the data (location of first pixel in the file).
 
virtual void GetDataOrigin (double &, double &, double &)
 Set/Get the origin of the data (location of first pixel in the file).
 
virtual void GetDataOrigin (double[3])
 Set/Get the origin of the data (location of first pixel in the file).
 
virtual void SetDataDirection (double data[])
 Set/Get the direction of the data (9 elements: 3x3 matrix).
 
virtual double * GetDataDirection ()
 Set/Get the direction of the data (9 elements: 3x3 matrix).
 
virtual void GetDataDirection (double data[9])
 Set/Get the direction of the data (9 elements: 3x3 matrix).
 
unsigned long GetHeaderSize ()
 Get the size of the header computed by this object.
 
unsigned long GetHeaderSize (unsigned long slice)
 Get the size of the header computed by this object.
 
virtual void SetDataByteOrderToBigEndian ()
 These methods should be used instead of the SwapBytes methods.
 
virtual void SetDataByteOrderToLittleEndian ()
 These methods should be used instead of the SwapBytes methods.
 
virtual int GetDataByteOrder ()
 These methods should be used instead of the SwapBytes methods.
 
virtual void SetDataByteOrder (int)
 These methods should be used instead of the SwapBytes methods.
 
virtual const char * GetDataByteOrderAsString ()
 These methods should be used instead of the SwapBytes methods.
 
virtual void SetFileNameSliceOffset (int)
 When reading files which start at an unusual index, this can be added to the slice number when generating the file name (default = 0)
 
virtual int GetFileNameSliceOffset ()
 When reading files which start at an unusual index, this can be added to the slice number when generating the file name (default = 0)
 
virtual void SetFileNameSliceSpacing (int)
 When reading files which have regular, but non contiguous slices (eg filename.1,filename.3,filename.5) a spacing can be specified to skip missing files (default = 1)
 
virtual int GetFileNameSliceSpacing ()
 When reading files which have regular, but non contiguous slices (eg filename.1,filename.3,filename.5) a spacing can be specified to skip missing files (default = 1)
 
virtual void SetSwapBytes (vtkTypeBool)
 Set/Get the byte swapping to explicitly swap the bytes of a file.
 
virtual vtkTypeBool GetSwapBytes ()
 Set/Get the byte swapping to explicitly swap the bytes of a file.
 
virtual void SwapBytesOn ()
 Set/Get the byte swapping to explicitly swap the bytes of a file.
 
virtual void SwapBytesOff ()
 Set/Get the byte swapping to explicitly swap the bytes of a file.
 
virtual void FileLowerLeftOn ()
 Set/Get whether the data comes from the file starting in the lower left corner or upper left corner.
 
virtual void FileLowerLeftOff ()
 Set/Get whether the data comes from the file starting in the lower left corner or upper left corner.
 
virtual vtkTypeBool GetFileLowerLeft ()
 Set/Get whether the data comes from the file starting in the lower left corner or upper left corner.
 
virtual void SetFileLowerLeft (vtkTypeBool)
 Set/Get whether the data comes from the file starting in the lower left corner or upper left corner.
 
virtual void ComputeInternalFileName (int slice)
 Set/Get the internal file name.
 
 vtkGetFilePathMacro (InternalFileName)
 Set/Get the internal file name.
 
- Public Member Functions inherited from vtkImageAlgorithm
virtual vtkTypeBool IsA (const char *type)
 Return 1 if this class is the same type of (or a subclass of) the named class.
 
vtkImageAlgorithmNewInstance () const
 
void PrintSelf (ostream &os, vtkIndent indent) override
 Methods invoked by print to print information about the object including superclasses.
 
vtkTypeBool ProcessRequest (vtkInformation *, vtkInformationVector **, vtkInformationVector *) override
 Process a request from the executive.
 
vtkImageDataGetOutput ()
 Get the output data object for a port on this algorithm.
 
vtkImageDataGetOutput (int)
 Get the output data object for a port on this algorithm.
 
virtual void SetOutput (vtkDataObject *d)
 Get the output data object for a port on this algorithm.
 
void SetInputData (vtkDataObject *)
 Assign a data object as input.
 
void SetInputData (int, vtkDataObject *)
 Assign a data object as input.
 
vtkDataObjectGetInput (int port)
 Get a data object for one of the input port connections.
 
vtkDataObjectGetInput ()
 Get a data object for one of the input port connections.
 
vtkImageDataGetImageDataInput (int port)
 Get a data object for one of the input port connections.
 
virtual void AddInputData (vtkDataObject *)
 Assign a data object as input.
 
virtual void AddInputData (int, vtkDataObject *)
 Assign a data object as input.
 
- Public Member Functions inherited from vtkAlgorithm
virtual vtkTypeBool IsA (const char *type)
 Return 1 if this class is the same type of (or a subclass of) the named class.
 
vtkAlgorithmNewInstance () const
 
void PrintSelf (ostream &os, vtkIndent indent) override
 Methods invoked by print to print information about the object including superclasses.
 
vtkTypeBool HasExecutive ()
 Check whether this algorithm has an assigned executive.
 
vtkExecutiveGetExecutive ()
 Get this algorithm's executive.
 
virtual void SetExecutive (vtkExecutive *executive)
 Set this algorithm's executive.
 
virtual vtkTypeBool ProcessRequest (vtkInformation *request, vtkInformationVector **inInfo, vtkInformationVector *outInfo)
 Upstream/Downstream requests form the generalized interface through which executives invoke a algorithm's functionality.
 
vtkTypeBool ProcessRequest (vtkInformation *request, vtkCollection *inInfo, vtkInformationVector *outInfo)
 Version of ProcessRequest() that is wrapped.
 
virtual int ComputePipelineMTime (vtkInformation *request, vtkInformationVector **inInfoVec, vtkInformationVector *outInfoVec, int requestFromOutputPort, vtkMTimeType *mtime)
 A special version of ProcessRequest meant specifically for the pipeline modified time request.
 
virtual int ModifyRequest (vtkInformation *request, int when)
 This method gives the algorithm a chance to modify the contents of a request before or after (specified in the when argument) it is forwarded.
 
vtkInformationGetInputPortInformation (int port)
 Get the information object associated with an input port.
 
vtkInformationGetOutputPortInformation (int port)
 Get the information object associated with an output port.
 
int GetNumberOfInputPorts ()
 Get the number of input ports used by the algorithm.
 
int GetNumberOfOutputPorts ()
 Get the number of output ports provided by the algorithm.
 
void SetAbortExecuteAndUpdateTime ()
 Set AbortExecute Flag and update LastAbortTime.
 
void UpdateProgress (double amount)
 Update the progress of the process object.
 
bool CheckAbort ()
 Checks to see if this filter should abort.
 
virtual void SetInputArrayToProcess (int idx, int port, int connection, const char *fieldAssociation, const char *attributeTypeorName)
 String based versions of SetInputArrayToProcess().
 
vtkInformationGetInputArrayInformation (int idx)
 Get the info object for the specified input array to this algorithm.
 
void RemoveAllInputs ()
 Remove all the input data.
 
vtkDataObjectGetOutputDataObject (int port)
 Get the data object that will contain the algorithm output for the given port.
 
vtkDataObjectGetInputDataObject (int port, int connection)
 Get the data object that will contain the algorithm input for the given port and given connection.
 
virtual void RemoveInputConnection (int port, vtkAlgorithmOutput *input)
 Remove a connection from the given input port index.
 
virtual void RemoveInputConnection (int port, int idx)
 Remove a connection given by index idx.
 
virtual void RemoveAllInputConnections (int port)
 Removes all input connections.
 
virtual void SetInputDataObject (int port, vtkDataObject *data)
 Sets the data-object as an input on the given port index.
 
virtual void SetInputDataObject (vtkDataObject *data)
 
virtual void AddInputDataObject (int port, vtkDataObject *data)
 Add the data-object as an input to this given port.
 
virtual void AddInputDataObject (vtkDataObject *data)
 
vtkAlgorithmOutputGetOutputPort (int index)
 Get a proxy object corresponding to the given output port of this algorithm.
 
vtkAlgorithmOutputGetOutputPort ()
 
int GetNumberOfInputConnections (int port)
 Get the number of inputs currently connected to a port.
 
int GetTotalNumberOfInputConnections ()
 Get the total number of inputs for this algorithm.
 
vtkAlgorithmOutputGetInputConnection (int port, int index)
 Get the algorithm output port connected to an input port.
 
vtkAlgorithmGetInputAlgorithm (int port, int index, int &algPort)
 Returns the algorithm and the output port index of that algorithm connected to a port-index pair.
 
vtkAlgorithmGetInputAlgorithm (int port, int index)
 Returns the algorithm connected to a port-index pair.
 
vtkAlgorithmGetInputAlgorithm ()
 Equivalent to GetInputAlgorithm(0, 0).
 
vtkExecutiveGetInputExecutive (int port, int index)
 Returns the executive associated with a particular input connection.
 
vtkExecutiveGetInputExecutive ()
 Equivalent to GetInputExecutive(0, 0)
 
vtkInformationGetInputInformation (int port, int index)
 Return the information object that is associated with a particular input connection.
 
vtkInformationGetInputInformation ()
 Equivalent to GetInputInformation(0, 0)
 
vtkInformationGetOutputInformation (int port)
 Return the information object that is associated with a particular output port.
 
virtual vtkTypeBool Update (int port, vtkInformationVector *requests)
 This method enables the passing of data requests to the algorithm to be used during execution (in addition to bringing a particular port up-to-date).
 
virtual vtkTypeBool Update (vtkInformation *requests)
 Convenience method to update an algorithm after passing requests to its first output port.
 
virtual int UpdatePiece (int piece, int numPieces, int ghostLevels, const int extents[6]=nullptr)
 Convenience method to update an algorithm after passing requests to its first output port.
 
virtual VTK_UNBLOCKTHREADS int UpdateExtent (const int extents[6])
 Convenience method to update an algorithm after passing requests to its first output port.
 
virtual VTK_UNBLOCKTHREADS int UpdateTimeStep (double time, int piece=-1, int numPieces=1, int ghostLevels=0, const int extents[6]=nullptr)
 Convenience method to update an algorithm after passing requests to its first output port.
 
virtual VTK_UNBLOCKTHREADS void UpdateInformation ()
 Bring the algorithm's information up-to-date.
 
virtual void UpdateDataObject ()
 Create output object(s).
 
virtual void PropagateUpdateExtent ()
 Propagate meta-data upstream.
 
virtual VTK_UNBLOCKTHREADS void UpdateWholeExtent ()
 Bring this algorithm's outputs up-to-date.
 
void ConvertTotalInputToPortConnection (int ind, int &port, int &conn)
 Convenience routine to convert from a linear ordering of input connections to a port/connection pair.
 
void RemoveNoPriorTemporalAccessInformationKey ()
 Removes any information key vtkStreamingDemandDrivenPipeline::NO_PRIOR_TEMPORAL_ACCESS() to all output ports of this vtkAlgorithm.
 
virtual vtkInformationGetInformation ()
 Set/Get the information object associated with this algorithm.
 
virtual void SetInformation (vtkInformation *)
 Set/Get the information object associated with this algorithm.
 
bool UsesGarbageCollector () const override
 Participate in garbage collection.
 
virtual void SetAbortExecute (vtkTypeBool)
 Set/Get the AbortExecute flag for the process object.
 
virtual vtkTypeBool GetAbortExecute ()
 Set/Get the AbortExecute flag for the process object.
 
virtual void AbortExecuteOn ()
 Set/Get the AbortExecute flag for the process object.
 
virtual void AbortExecuteOff ()
 Set/Get the AbortExecute flag for the process object.
 
virtual double GetProgress ()
 Get the execution progress of a process object.
 
void SetContainerAlgorithm (vtkAlgorithm *containerAlg)
 Set/get a Container algorithm for this algorithm.
 
vtkAlgorithmGetContainerAlgorithm ()
 Set/get a Container algorithm for this algorithm.
 
virtual void SetAbortOutput (bool)
 Set/Get an internal variable used to communicate between the algorithm and executive.
 
virtual bool GetAbortOutput ()
 Set/Get an internal variable used to communicate between the algorithm and executive.
 
void SetProgressShiftScale (double shift, double scale)
 Specify the shift and scale values to use to apply to the progress amount when UpdateProgress is called.
 
virtual double GetProgressShift ()
 Specify the shift and scale values to use to apply to the progress amount when UpdateProgress is called.
 
virtual double GetProgressScale ()
 Specify the shift and scale values to use to apply to the progress amount when UpdateProgress is called.
 
void SetProgressText (const char *ptext)
 Set the current text message associated with the progress state.
 
virtual char * GetProgressText ()
 Set the current text message associated with the progress state.
 
virtual unsigned long GetErrorCode ()
 The error code contains a possible error that occurred while reading or writing the file.
 
virtual void SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, const char *name)
 Set the input data arrays that this algorithm will process.
 
virtual void SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, int fieldAttributeType)
 Set the input data arrays that this algorithm will process.
 
virtual void SetInputArrayToProcess (int idx, vtkInformation *info)
 Set the input data arrays that this algorithm will process.
 
virtual void SetInputConnection (int port, vtkAlgorithmOutput *input)
 Set the connection for the given input port index.
 
virtual void SetInputConnection (vtkAlgorithmOutput *input)
 Set the connection for the given input port index.
 
virtual void AddInputConnection (int port, vtkAlgorithmOutput *input)
 Add a connection to the given input port index.
 
virtual void AddInputConnection (vtkAlgorithmOutput *input)
 Add a connection to the given input port index.
 
virtual VTK_UNBLOCKTHREADS void Update (int port)
 Bring this algorithm's outputs up-to-date.
 
virtual VTK_UNBLOCKTHREADS void Update ()
 Bring this algorithm's outputs up-to-date.
 
virtual void SetReleaseDataFlag (vtkTypeBool)
 Turn release data flag on or off for all output ports.
 
virtual vtkTypeBool GetReleaseDataFlag ()
 Turn release data flag on or off for all output ports.
 
void ReleaseDataFlagOn ()
 Turn release data flag on or off for all output ports.
 
void ReleaseDataFlagOff ()
 Turn release data flag on or off for all output ports.
 
int UpdateExtentIsEmpty (vtkInformation *pinfo, vtkDataObject *output)
 This detects when the UpdateExtent will generate no data This condition is satisfied when the UpdateExtent has zero volume (0,-1,...) or the UpdateNumberOfPieces is 0.
 
int UpdateExtentIsEmpty (vtkInformation *pinfo, int extentType)
 This detects when the UpdateExtent will generate no data This condition is satisfied when the UpdateExtent has zero volume (0,-1,...) or the UpdateNumberOfPieces is 0.
 
int * GetUpdateExtent ()
 These functions return the update extent for output ports that use 3D extents.
 
int * GetUpdateExtent (int port)
 These functions return the update extent for output ports that use 3D extents.
 
void GetUpdateExtent (int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)
 These functions return the update extent for output ports that use 3D extents.
 
void GetUpdateExtent (int port, int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)
 These functions return the update extent for output ports that use 3D extents.
 
void GetUpdateExtent (int extent[6])
 These functions return the update extent for output ports that use 3D extents.
 
void GetUpdateExtent (int port, int extent[6])
 These functions return the update extent for output ports that use 3D extents.
 
int GetUpdatePiece ()
 These functions return the update extent for output ports that use piece extents.
 
int GetUpdatePiece (int port)
 These functions return the update extent for output ports that use piece extents.
 
int GetUpdateNumberOfPieces ()
 These functions return the update extent for output ports that use piece extents.
 
int GetUpdateNumberOfPieces (int port)
 These functions return the update extent for output ports that use piece extents.
 
int GetUpdateGhostLevel ()
 These functions return the update extent for output ports that use piece extents.
 
int GetUpdateGhostLevel (int port)
 These functions return the update extent for output ports that use piece extents.
 
void SetProgressObserver (vtkProgressObserver *)
 If an ProgressObserver is set, the algorithm will report progress through it rather than directly.
 
virtual vtkProgressObserverGetProgressObserver ()
 If an ProgressObserver is set, the algorithm will report progress through it rather than directly.
 
void SetNoPriorTemporalAccessInformationKey (int key)
 Set to all output ports of this algorithm the information key vtkStreamingDemandDrivenPipeline::NO_PRIOR_TEMPORAL_ACCESS().
 
void SetNoPriorTemporalAccessInformationKey ()
 Set to all output ports of this algorithm the information key vtkStreamingDemandDrivenPipeline::NO_PRIOR_TEMPORAL_ACCESS().
 
- Public Member Functions inherited from vtkObject
 vtkBaseTypeMacro (vtkObject, vtkObjectBase)
 
virtual void DebugOn ()
 Turn debugging output on.
 
virtual void DebugOff ()
 Turn debugging output off.
 
bool GetDebug ()
 Get the value of the debug flag.
 
void SetDebug (bool debugFlag)
 Set the value of the debug flag.
 
virtual void Modified ()
 Update the modification time for this object.
 
virtual vtkMTimeType GetMTime ()
 Return this object's modified time.
 
void PrintSelf (ostream &os, vtkIndent indent) override
 Methods invoked by print to print information about the object including superclasses.
 
void RemoveObserver (unsigned long tag)
 
void RemoveObservers (unsigned long event)
 
void RemoveObservers (const char *event)
 
void RemoveAllObservers ()
 
vtkTypeBool HasObserver (unsigned long event)
 
vtkTypeBool HasObserver (const char *event)
 
vtkTypeBool InvokeEvent (unsigned long event)
 
vtkTypeBool InvokeEvent (const char *event)
 
std::string GetObjectDescription () const override
 The object description printed in messages and PrintSelf output.
 
unsigned long AddObserver (unsigned long event, vtkCommand *, float priority=0.0f)
 Allow people to add/remove/invoke observers (callbacks) to any VTK object.
 
unsigned long AddObserver (const char *event, vtkCommand *, float priority=0.0f)
 Allow people to add/remove/invoke observers (callbacks) to any VTK object.
 
vtkCommandGetCommand (unsigned long tag)
 Allow people to add/remove/invoke observers (callbacks) to any VTK object.
 
void RemoveObserver (vtkCommand *)
 Allow people to add/remove/invoke observers (callbacks) to any VTK object.
 
void RemoveObservers (unsigned long event, vtkCommand *)
 Allow people to add/remove/invoke observers (callbacks) to any VTK object.
 
void RemoveObservers (const char *event, vtkCommand *)
 Allow people to add/remove/invoke observers (callbacks) to any VTK object.
 
vtkTypeBool HasObserver (unsigned long event, vtkCommand *)
 Allow people to add/remove/invoke observers (callbacks) to any VTK object.
 
vtkTypeBool HasObserver (const char *event, vtkCommand *)
 Allow people to add/remove/invoke observers (callbacks) to any VTK object.
 
template<class U , class T >
unsigned long AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f)
 Overloads to AddObserver that allow developers to add class member functions as callbacks for events.
 
template<class U , class T >
unsigned long AddObserver (unsigned long event, U observer, void(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f)
 Overloads to AddObserver that allow developers to add class member functions as callbacks for events.
 
template<class U , class T >
unsigned long AddObserver (unsigned long event, U observer, bool(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f)
 Allow user to set the AbortFlagOn() with the return value of the callback method.
 
vtkTypeBool InvokeEvent (unsigned long event, void *callData)
 This method invokes an event and return whether the event was aborted or not.
 
vtkTypeBool InvokeEvent (const char *event, void *callData)
 This method invokes an event and return whether the event was aborted or not.
 
virtual void SetObjectName (const std::string &objectName)
 Set/get the name of this object for reporting purposes.
 
virtual std::string GetObjectName () const
 Set/get the name of this object for reporting purposes.
 
- Public Member Functions inherited from vtkObjectBase
const char * GetClassName () const
 Return the class name as a string.
 
virtual std::string GetObjectDescription () const
 The object description printed in messages and PrintSelf output.
 
virtual vtkTypeBool IsA (const char *name)
 Return 1 if this class is the same type of (or a subclass of) the named class.
 
virtual vtkIdType GetNumberOfGenerationsFromBase (const char *name)
 Given the name of a base class of this class type, return the distance of inheritance between this class type and the named class (how many generations of inheritance are there between this class and the named class).
 
virtual void Delete ()
 Delete a VTK object.
 
virtual void FastDelete ()
 Delete a reference to this object.
 
void InitializeObjectBase ()
 
void Print (ostream &os)
 Print an object to an ostream.
 
void Register (vtkObjectBase *o)
 Increase the reference count (mark as used by another object).
 
virtual void UnRegister (vtkObjectBase *o)
 Decrease the reference count (release by another object).
 
int GetReferenceCount ()
 Return the current reference count of this object.
 
void SetReferenceCount (int)
 Sets the reference count.
 
bool GetIsInMemkind () const
 A local state flag that remembers whether this object lives in the normal or extended memory space.
 
virtual void PrintHeader (ostream &os, vtkIndent indent)
 Methods invoked by print to print information about the object including superclasses.
 
virtual void PrintTrailer (ostream &os, vtkIndent indent)
 Methods invoked by print to print information about the object including superclasses.
 

Static Public Member Functions

static vtkTypeBool IsTypeOf (const char *type)
 
static vtkMINCImageReaderSafeDownCast (vtkObjectBase *o)
 
static vtkMINCImageReaderNew ()
 
- Static Public Member Functions inherited from vtkImageReader2
static vtkImageReader2New ()
 
static vtkTypeBool IsTypeOf (const char *type)
 
static vtkImageReader2SafeDownCast (vtkObjectBase *o)
 
- Static Public Member Functions inherited from vtkImageAlgorithm
static vtkTypeBool IsTypeOf (const char *type)
 
static vtkImageAlgorithmSafeDownCast (vtkObjectBase *o)
 
- Static Public Member Functions inherited from vtkAlgorithm
static vtkAlgorithmNew ()
 
static vtkTypeBool IsTypeOf (const char *type)
 
static vtkAlgorithmSafeDownCast (vtkObjectBase *o)
 
static vtkInformationIntegerKeyINPUT_IS_OPTIONAL ()
 Keys used to specify input port requirements.
 
static vtkInformationIntegerKeyINPUT_IS_REPEATABLE ()
 
static vtkInformationInformationVectorKeyINPUT_REQUIRED_FIELDS ()
 
static vtkInformationStringVectorKeyINPUT_REQUIRED_DATA_TYPE ()
 
static vtkInformationInformationVectorKeyINPUT_ARRAYS_TO_PROCESS ()
 
static vtkInformationIntegerKeyINPUT_PORT ()
 
static vtkInformationIntegerKeyINPUT_CONNECTION ()
 
static vtkInformationIntegerKeyCAN_PRODUCE_SUB_EXTENT ()
 This key tells the executive that a particular output port is capable of producing an arbitrary subextent of the whole extent.
 
static vtkInformationIntegerKeyCAN_HANDLE_PIECE_REQUEST ()
 Key that tells the pipeline that a particular algorithm can or cannot handle piece request.
 
static vtkInformationIntegerKeyABORTED ()
 
static void SetDefaultExecutivePrototype (vtkExecutive *proto)
 If the DefaultExecutivePrototype is set, a copy of it is created in CreateDefaultExecutive() using NewInstance().
 
- Static Public Member Functions inherited from vtkObject
static vtkObjectNew ()
 Create an object with Debug turned off, modified time initialized to zero, and reference counting on.
 
static void BreakOnError ()
 This method is called when vtkErrorMacro executes.
 
static void SetGlobalWarningDisplay (vtkTypeBool val)
 This is a global flag that controls whether any debug, warning or error messages are displayed.
 
static void GlobalWarningDisplayOn ()
 This is a global flag that controls whether any debug, warning or error messages are displayed.
 
static void GlobalWarningDisplayOff ()
 This is a global flag that controls whether any debug, warning or error messages are displayed.
 
static vtkTypeBool GetGlobalWarningDisplay ()
 This is a global flag that controls whether any debug, warning or error messages are displayed.
 
- Static Public Member Functions inherited from vtkObjectBase
static vtkTypeBool IsTypeOf (const char *name)
 Return 1 if this class type is the same type of (or a subclass of) the named class.
 
static vtkIdType GetNumberOfGenerationsFromBaseType (const char *name)
 Given a the name of a base class of this class type, return the distance of inheritance between this class type and the named class (how many generations of inheritance are there between this class and the named class).
 
static vtkObjectBaseNew ()
 Create an object with Debug turned off, modified time initialized to zero, and reference counting on.
 
static void SetMemkindDirectory (const char *directoryname)
 The name of a directory, ideally mounted -o dax, to memory map an extended memory space within.
 
static bool GetUsingMemkind ()
 A global state flag that controls whether vtkObjects are constructed in the usual way (the default) or within the extended memory space.
 

Protected Member Functions

virtual vtkObjectBaseNewInstanceInternal () const
 
 vtkMINCImageReader ()
 
 ~vtkMINCImageReader () override
 
virtual int OpenNetCDFFile (const char *filename, int &ncid)
 
virtual int CloseNetCDFFile (int ncid)
 
virtual int IndexFromDimensionName (const char *dimName)
 
virtual int ReadMINCFileAttributes ()
 
virtual void FindRangeAndRescaleValues ()
 
void ExecuteInformation () override
 
void ExecuteDataWithInformation (vtkDataObject *out, vtkInformation *outInfo) override
 This is a convenience method that is implemented in many subclasses instead of RequestData.
 
- Protected Member Functions inherited from vtkImageReader2
virtual vtkObjectBaseNewInstanceInternal () const
 
int RequestInformation (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override
 Subclasses can reimplement this method to collect information from their inputs and set information for their outputs.
 
virtual void ExecuteInformation ()
 
void ExecuteDataWithInformation (vtkDataObject *data, vtkInformation *outInfo) override
 This is a convenience method that is implemented in many subclasses instead of RequestData.
 
virtual void ComputeDataIncrements ()
 
- Protected Member Functions inherited from vtkImageAlgorithm
virtual vtkObjectBaseNewInstanceInternal () const
 
 vtkImageAlgorithm ()
 
 ~vtkImageAlgorithm () override
 
virtual int RequestInformation (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector)
 Subclasses can reimplement this method to collect information from their inputs and set information for their outputs.
 
virtual int RequestUpdateExtent (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
 Subclasses can reimplement this method to translate the update extent requests from each output port into update extent requests for the input connections.
 
virtual int RequestUpdateTime (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
 
virtual void CopyInputArrayAttributesToOutput (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector)
 Convenience method to copy the scalar type and number of components from the input data to the output data.
 
virtual int RequestData (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector)
 This is called in response to a REQUEST_DATA request from the executive.
 
virtual void ExecuteDataWithInformation (vtkDataObject *output, vtkInformation *outInfo)
 This is a convenience method that is implemented in many subclasses instead of RequestData.
 
virtual void CopyAttributeData (vtkImageData *in, vtkImageData *out, vtkInformationVector **inputVector)
 Copy the other point and cell data.
 
virtual void ExecuteData (vtkDataObject *output)
 This method is the old style execute method, provided for the sake of backwards compatibility with older filters and readers.
 
virtual void Execute ()
 This method is the old style execute method, provided for the sake of backwards compatibility with older filters and readers.
 
virtual void AllocateOutputData (vtkImageData *out, vtkInformation *outInfo, int *uExtent)
 Allocate the output data.
 
virtual vtkImageDataAllocateOutputData (vtkDataObject *out, vtkInformation *outInfo)
 Allocate the output data.
 
int FillOutputPortInformation (int port, vtkInformation *info) override
 These method should be reimplemented by subclasses that have more than a single input or single output.
 
int FillInputPortInformation (int port, vtkInformation *info) override
 These method should be reimplemented by subclasses that have more than a single input or single output.
 
- Protected Member Functions inherited from vtkAlgorithm
virtual vtkObjectBaseNewInstanceInternal () const
 
 vtkAlgorithm ()
 
 ~vtkAlgorithm () override
 
bool CheckUpstreamAbort ()
 Checks to see if an upstream filter has been aborted.
 
virtual int FillInputPortInformation (int port, vtkInformation *info)
 Fill the input port information objects for this algorithm.
 
virtual int FillOutputPortInformation (int port, vtkInformation *info)
 Fill the output port information objects for this algorithm.
 
virtual void SetNumberOfInputPorts (int n)
 Set the number of input ports used by the algorithm.
 
virtual void SetNumberOfOutputPorts (int n)
 Set the number of output ports provided by the algorithm.
 
int InputPortIndexInRange (int index, const char *action)
 
int OutputPortIndexInRange (int index, const char *action)
 
int GetInputArrayAssociation (int idx, vtkInformationVector **inputVector)
 Get the association of the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass.
 
vtkInformationGetInputArrayFieldInformation (int idx, vtkInformationVector **inputVector)
 This method takes in an index (as specified in SetInputArrayToProcess) and a pipeline information vector.
 
virtual vtkExecutiveCreateDefaultExecutive ()
 Create a default executive.
 
void ReportReferences (vtkGarbageCollector *) override
 
virtual void SetNthInputConnection (int port, int index, vtkAlgorithmOutput *input)
 Replace the Nth connection on the given input port.
 
virtual void SetNumberOfInputConnections (int port, int n)
 Set the number of input connections on the given input port.
 
void SetInputDataInternal (int port, vtkDataObject *input)
 These methods are used by subclasses to implement methods to set data objects directly as input.
 
void AddInputDataInternal (int port, vtkDataObject *input)
 
int GetInputArrayAssociation (int idx, int connection, vtkInformationVector **inputVector)
 Filters that have multiple connections on one port can use this signature.
 
int GetInputArrayAssociation (int idx, vtkDataObject *input)
 Filters that have multiple connections on one port can use this signature.
 
vtkDataArrayGetInputArrayToProcess (int idx, vtkInformationVector **inputVector)
 Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass.
 
vtkDataArrayGetInputArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
 Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass.
 
vtkDataArrayGetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
 Filters that have multiple connections on one port can use this signature.
 
vtkDataArrayGetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
 Filters that have multiple connections on one port can use this signature.
 
vtkDataArrayGetInputArrayToProcess (int idx, vtkDataObject *input)
 Filters that have multiple connections on one port can use this signature.
 
vtkDataArrayGetInputArrayToProcess (int idx, vtkDataObject *input, int &association)
 Filters that have multiple connections on one port can use this signature.
 
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector)
 Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass.
 
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
 Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass.
 
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
 Filters that have multiple connections on one port can use this signature.
 
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
 Filters that have multiple connections on one port can use this signature.
 
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, vtkDataObject *input)
 Filters that have multiple connections on one port can use this signature.
 
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, vtkDataObject *input, int &association)
 Filters that have multiple connections on one port can use this signature.
 
virtual void SetErrorCode (unsigned long)
 The error code contains a possible error that occurred while reading or writing the file.
 
- Protected Member Functions inherited from vtkObject
 vtkObject ()
 
 ~vtkObject () override
 
void RegisterInternal (vtkObjectBase *, vtkTypeBool check) override
 
void UnRegisterInternal (vtkObjectBase *, vtkTypeBool check) override
 
void InternalGrabFocus (vtkCommand *mouseEvents, vtkCommand *keypressEvents=nullptr)
 These methods allow a command to exclusively grab all events.
 
void InternalReleaseFocus ()
 These methods allow a command to exclusively grab all events.
 
- Protected Member Functions inherited from vtkObjectBase
 vtkObjectBase ()
 
virtual ~vtkObjectBase ()
 
virtual void RegisterInternal (vtkObjectBase *, vtkTypeBool check)
 
virtual void UnRegisterInternal (vtkObjectBase *, vtkTypeBool check)
 
virtual void ReportReferences (vtkGarbageCollector *)
 
virtual void ObjectFinalize ()
 
 vtkObjectBase (const vtkObjectBase &)
 
void operator= (const vtkObjectBase &)
 

Static Protected Member Functions

static int ConvertMINCTypeToVTKType (int minctype, int mincsigned)
 
- Static Protected Member Functions inherited from vtkAlgorithm
static vtkInformationIntegerKeyPORT_REQUIREMENTS_FILLED ()
 
- Static Protected Member Functions inherited from vtkObjectBase
static vtkMallocingFunction GetCurrentMallocFunction ()
 
static vtkReallocingFunction GetCurrentReallocFunction ()
 
static vtkFreeingFunction GetCurrentFreeFunction ()
 
static vtkFreeingFunction GetAlternateFreeFunction ()
 

Protected Attributes

int MINCImageType
 
int MINCImageTypeSigned
 
double ValidRange [2]
 
double ImageRange [2]
 
double DataRange [2]
 
int NumberOfTimeSteps
 
int TimeStep
 
vtkMatrix4x4DirectionCosines
 
double RescaleSlope
 
double RescaleIntercept
 
vtkTypeBool RescaleRealValues
 
vtkMINCImageAttributesImageAttributes
 
int FileNameHasChanged
 
- Protected Attributes inherited from vtkImageReader2
vtkStringArrayFileNames
 
char * InternalFileName
 
char * FileName
 
char * FilePrefix
 
char * FilePattern
 
int NumberOfScalarComponents
 
vtkTypeBool FileLowerLeft
 
const void * MemoryBuffer
 
vtkIdType MemoryBufferLength
 
istream * File
 
unsigned long DataIncrements [4]
 
int DataExtent [6]
 
vtkTypeBool SwapBytes
 
int FileDimensionality
 
unsigned long HeaderSize
 
int DataScalarType
 
unsigned long ManualHeaderSize
 
double DataSpacing [3]
 
double DataOrigin [3]
 
double DataDirection [9]
 
int FileNameSliceOffset
 
int FileNameSliceSpacing
 
- Protected Attributes inherited from vtkAlgorithm
vtkTimeStamp LastAbortCheckTime
 
vtkInformationInformation
 
double Progress
 
char * ProgressText
 
vtkProgressObserverProgressObserver
 
unsigned long ErrorCode
 The error code contains a possible error that occurred while reading or writing the file.
 
- Protected Attributes inherited from vtkObject
bool Debug
 
vtkTimeStamp MTime
 
vtkSubjectHelper * SubjectHelper
 
std::string ObjectName
 
- Protected Attributes inherited from vtkObjectBase
std::atomic< int32_t > ReferenceCount
 
vtkWeakPointerBase ** WeakPointers
 

Additional Inherited Members

- Public Attributes inherited from vtkAlgorithm
std::atomic< vtkTypeBoolAbortExecute
 
- Static Protected Attributes inherited from vtkAlgorithm
static vtkTimeStamp LastAbortTime
 
static vtkExecutiveDefaultExecutivePrototype
 

Detailed Description

A reader for MINC files.

MINC is a NetCDF-based medical image file format that was developed at the Montreal Neurological Institute in 1992. This class will read a MINC file into VTK, rearranging the data to match the VTK x, y, and z dimensions, and optionally rescaling real-valued data to VTK_FLOAT if RescaleRealValuesOn() is set. If RescaleRealValues is off, then the data will be stored in its original data type and the GetRescaleSlope(), GetRescaleIntercept() method can be used to retrieve global rescaling parameters. If the original file had a time dimension, the SetTimeStep() method can be used to specify a time step to read. All of the original header information can be accessed though the GetImageAttributes() method.

See also
vtkMINCImageWriter vtkMINCImageAttributes
Thanks:
Thanks to David Gobbi for writing this class and Atamai Inc. for contributing it to VTK.
Tests:
vtkMINCImageReader (Tests)

Definition at line 45 of file vtkMINCImageReader.h.

Member Typedef Documentation

◆ Superclass

Definition at line 48 of file vtkMINCImageReader.h.

Constructor & Destructor Documentation

◆ vtkMINCImageReader()

vtkMINCImageReader::vtkMINCImageReader ( )
protected

◆ ~vtkMINCImageReader()

vtkMINCImageReader::~vtkMINCImageReader ( )
overrideprotected

Member Function Documentation

◆ IsTypeOf()

static vtkTypeBool vtkMINCImageReader::IsTypeOf ( const char *  type)
static

◆ IsA()

virtual vtkTypeBool vtkMINCImageReader::IsA ( const char *  name)
virtual

Return 1 if this class is the same type of (or a subclass of) the named class.

Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkImageReader2.

◆ SafeDownCast()

static vtkMINCImageReader * vtkMINCImageReader::SafeDownCast ( vtkObjectBase o)
static

◆ NewInstanceInternal()

virtual vtkObjectBase * vtkMINCImageReader::NewInstanceInternal ( ) const
protectedvirtual

Reimplemented from vtkImageReader2.

◆ NewInstance()

vtkMINCImageReader * vtkMINCImageReader::NewInstance ( ) const

◆ New()

static vtkMINCImageReader * vtkMINCImageReader::New ( )
static

◆ PrintSelf()

void vtkMINCImageReader::PrintSelf ( ostream &  os,
vtkIndent  indent 
)
overridevirtual

Methods invoked by print to print information about the object including superclasses.

Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkImageReader2.

◆ SetFileName()

void vtkMINCImageReader::SetFileName ( VTK_FILEPATH const char *  name)
overridevirtual

Set the file name.

Reimplemented from vtkImageReader2.

◆ GetFileExtensions()

const char * vtkMINCImageReader::GetFileExtensions ( )
inlineoverridevirtual

Get the extension for this file format.

Reimplemented from vtkImageReader2.

Definition at line 61 of file vtkMINCImageReader.h.

◆ GetDescriptiveName()

const char * vtkMINCImageReader::GetDescriptiveName ( )
inlineoverridevirtual

Get the name of this file format.

Reimplemented from vtkImageReader2.

Definition at line 66 of file vtkMINCImageReader.h.

◆ CanReadFile()

int vtkMINCImageReader::CanReadFile ( VTK_FILEPATH const char *  name)
override

Test whether the specified file can be read.

◆ GetDirectionCosines()

virtual vtkMatrix4x4 * vtkMINCImageReader::GetDirectionCosines ( )
virtual

Get a matrix that describes the orientation of the data.

The three columns of the matrix are the direction cosines for the x, y and z dimensions respectively.

◆ GetRescaleSlope()

virtual double vtkMINCImageReader::GetRescaleSlope ( )
virtual

Get the slope and intercept for rescaling the scalar values to real data values.

To convert scalar values to real values, use the equation y = x*RescaleSlope + RescaleIntercept.

◆ GetRescaleIntercept()

virtual double vtkMINCImageReader::GetRescaleIntercept ( )
virtual

Get the slope and intercept for rescaling the scalar values to real data values.

To convert scalar values to real values, use the equation y = x*RescaleSlope + RescaleIntercept.

◆ SetRescaleRealValues()

virtual void vtkMINCImageReader::SetRescaleRealValues ( vtkTypeBool  )
virtual

Rescale real data values to float.

If this is done, the RescaleSlope and RescaleIntercept will be set to 1 and 0 respectively. This is off by default.

◆ RescaleRealValuesOn()

virtual void vtkMINCImageReader::RescaleRealValuesOn ( )
virtual

Rescale real data values to float.

If this is done, the RescaleSlope and RescaleIntercept will be set to 1 and 0 respectively. This is off by default.

◆ RescaleRealValuesOff()

virtual void vtkMINCImageReader::RescaleRealValuesOff ( )
virtual

Rescale real data values to float.

If this is done, the RescaleSlope and RescaleIntercept will be set to 1 and 0 respectively. This is off by default.

◆ GetRescaleRealValues()

virtual vtkTypeBool vtkMINCImageReader::GetRescaleRealValues ( )
virtual

Rescale real data values to float.

If this is done, the RescaleSlope and RescaleIntercept will be set to 1 and 0 respectively. This is off by default.

◆ GetDataRange() [1/2]

virtual double * vtkMINCImageReader::GetDataRange ( )
virtual

Get the scalar range of the output from the information in the file header.

This is more efficient that computing the scalar range, but in some cases the MINC file stores an incorrect valid_range and the DataRange will be incorrect.

◆ GetDataRange() [2/2]

virtual void vtkMINCImageReader::GetDataRange ( double  range[2])
inlinevirtual

Get the scalar range of the output from the information in the file header.

This is more efficient that computing the scalar range, but in some cases the MINC file stores an incorrect valid_range and the DataRange will be incorrect.

Definition at line 109 of file vtkMINCImageReader.h.

◆ GetNumberOfTimeSteps()

virtual int vtkMINCImageReader::GetNumberOfTimeSteps ( )
virtual

Get the number of time steps in the file.

◆ SetTimeStep()

virtual void vtkMINCImageReader::SetTimeStep ( int  )
virtual

Set the time step to read.

◆ GetTimeStep()

virtual int vtkMINCImageReader::GetTimeStep ( )
virtual

Set the time step to read.

◆ GetImageAttributes()

virtual vtkMINCImageAttributes * vtkMINCImageReader::GetImageAttributes ( )
virtual

Get the image attributes, which contain patient information and other useful metadata.

◆ OpenNetCDFFile()

virtual int vtkMINCImageReader::OpenNetCDFFile ( const char *  filename,
int &  ncid 
)
protectedvirtual

◆ CloseNetCDFFile()

virtual int vtkMINCImageReader::CloseNetCDFFile ( int  ncid)
protectedvirtual

◆ IndexFromDimensionName()

virtual int vtkMINCImageReader::IndexFromDimensionName ( const char *  dimName)
protectedvirtual

◆ ReadMINCFileAttributes()

virtual int vtkMINCImageReader::ReadMINCFileAttributes ( )
protectedvirtual

◆ FindRangeAndRescaleValues()

virtual void vtkMINCImageReader::FindRangeAndRescaleValues ( )
protectedvirtual

◆ ConvertMINCTypeToVTKType()

static int vtkMINCImageReader::ConvertMINCTypeToVTKType ( int  minctype,
int  mincsigned 
)
staticprotected

◆ ExecuteInformation()

void vtkMINCImageReader::ExecuteInformation ( )
overrideprotectedvirtual

Reimplemented from vtkImageReader2.

◆ ExecuteDataWithInformation()

void vtkMINCImageReader::ExecuteDataWithInformation ( vtkDataObject output,
vtkInformation outInfo 
)
overrideprotectedvirtual

This is a convenience method that is implemented in many subclasses instead of RequestData.

It is called by RequestData.

Reimplemented from vtkImageReader2.

Member Data Documentation

◆ MINCImageType

int vtkMINCImageReader::MINCImageType
protected

Definition at line 140 of file vtkMINCImageReader.h.

◆ MINCImageTypeSigned

int vtkMINCImageReader::MINCImageTypeSigned
protected

Definition at line 141 of file vtkMINCImageReader.h.

◆ ValidRange

double vtkMINCImageReader::ValidRange[2]
protected

Definition at line 143 of file vtkMINCImageReader.h.

◆ ImageRange

double vtkMINCImageReader::ImageRange[2]
protected

Definition at line 144 of file vtkMINCImageReader.h.

◆ DataRange

double vtkMINCImageReader::DataRange[2]
protected

Definition at line 145 of file vtkMINCImageReader.h.

◆ NumberOfTimeSteps

int vtkMINCImageReader::NumberOfTimeSteps
protected

Definition at line 147 of file vtkMINCImageReader.h.

◆ TimeStep

int vtkMINCImageReader::TimeStep
protected

Definition at line 148 of file vtkMINCImageReader.h.

◆ DirectionCosines

vtkMatrix4x4* vtkMINCImageReader::DirectionCosines
protected

Definition at line 149 of file vtkMINCImageReader.h.

◆ RescaleSlope

double vtkMINCImageReader::RescaleSlope
protected

Definition at line 150 of file vtkMINCImageReader.h.

◆ RescaleIntercept

double vtkMINCImageReader::RescaleIntercept
protected

Definition at line 151 of file vtkMINCImageReader.h.

◆ RescaleRealValues

vtkTypeBool vtkMINCImageReader::RescaleRealValues
protected

Definition at line 152 of file vtkMINCImageReader.h.

◆ ImageAttributes

vtkMINCImageAttributes* vtkMINCImageReader::ImageAttributes
protected

Definition at line 153 of file vtkMINCImageReader.h.

◆ FileNameHasChanged

int vtkMINCImageReader::FileNameHasChanged
protected

Definition at line 155 of file vtkMINCImageReader.h.


The documentation for this class was generated from the following file: