VTK
9.4.20241221
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A 2D graphics item for rendering a tree and an associated heatmap. More...
#include <vtkTreeHeatmapItem.h>
Public Types | |
typedef vtkContextItem | Superclass |
Public Types inherited from vtkContextItem | |
typedef vtkAbstractContextItem | Superclass |
Public Types inherited from vtkAbstractContextItem | |
typedef vtkObject | Superclass |
Public Member Functions | |
virtual vtkTypeBool | IsA (const char *type) |
Return 1 if this class is the same type of (or a subclass of) the named class. | |
vtkTreeHeatmapItem * | NewInstance () const |
void | PrintSelf (ostream &os, vtkIndent indent) override |
Methods invoked by print to print information about the object including superclasses. | |
virtual void | SetTree (vtkTree *tree) |
Set the tree that this item draws. | |
vtkTree * | GetTree () |
Get the tree that this item draws. | |
virtual void | SetColumnTree (vtkTree *tree) |
Set a tree to be drawn for the columns of the heatmap. | |
vtkTree * | GetColumnTree () |
Get the tree that represents the columns of the heatmap (if one has been set). | |
virtual void | SetTable (vtkTable *table) |
Set the table that this item draws. | |
vtkTable * | GetTable () |
Get the table that this item draws. | |
void | ReorderTable () |
Reorder the rows in the table so they match the order of the leaf nodes in our tree. | |
void | ReverseTableRows () |
Reverse the order of the rows in our input table. | |
void | ReverseTableColumns () |
Reverse the order of the rows in our input table. | |
void | SetOrientation (int orientation) |
Set which way the tree / heatmap should face within the visualization. | |
int | GetOrientation () |
Get the current orientation. | |
void | GetBounds (double bounds[4]) |
Get the bounds of this item (xMin, xMax, yMin, Max) in pixel coordinates. | |
void | GetCenter (double center[2]) |
Get the center point of this item in pixel coordinates. | |
void | GetSize (double size[2]) |
Get the size of this item in pixel coordinates. | |
void | CollapseToNumberOfLeafNodes (unsigned int n) |
Collapse subtrees until there are only n leaf nodes left in the tree. | |
vtkTree * | GetPrunedTree () |
Deprecated. | |
void | SetTreeColorArray (const char *arrayName) |
Deprecated. | |
bool | Hit (const vtkContextMouseEvent &mouse) override |
Returns true if the transform is interactive, false otherwise. | |
bool | MouseDoubleClickEvent (const vtkContextMouseEvent &event) override |
Propagate any double click onto the dendrogram to check if any subtrees should be collapsed or expanded. | |
vtkDendrogramItem * | GetDendrogram () |
Get/Set the dendrogram contained by this item. | |
void | SetDendrogram (vtkDendrogramItem *dendrogram) |
Get/Set the dendrogram contained by this item. | |
vtkHeatmapItem * | GetHeatmap () |
Get/Set the heatmap contained by this item. | |
void | SetHeatmap (vtkHeatmapItem *heatmap) |
Get/Set the heatmap contained by this item. | |
float | GetTreeLineWidth () |
Get/Set how wide the edges of the trees should be. | |
void | SetTreeLineWidth (float width) |
Get/Set how wide the edges of the trees should be. | |
Public Member Functions inherited from vtkContextItem | |
virtual vtkTypeBool | IsA (const char *type) |
Return 1 if this class is the same type of (or a subclass of) the named class. | |
vtkContextItem * | NewInstance () const |
void | PrintSelf (ostream &os, vtkIndent indent) override |
Methods invoked by print to print information about the object including superclasses. | |
virtual void | SetTransform (vtkContextTransform *) |
Set the transform of the item. | |
virtual double | GetOpacity () |
Get the opacity of the item. | |
virtual void | SetOpacity (double) |
Set the opacity of the item. | |
Public Member Functions inherited from vtkAbstractContextItem | |
virtual vtkTypeBool | IsA (const char *type) |
Return 1 if this class is the same type of (or a subclass of) the named class. | |
vtkAbstractContextItem * | NewInstance () const |
void | PrintSelf (ostream &os, vtkIndent indent) override |
Methods invoked by print to print information about the object including superclasses. | |
virtual void | Update () |
Perform any updates to the item that may be necessary before rendering. | |
virtual bool | Paint (vtkContext2D *painter) |
Paint event for the item, called whenever the item needs to be drawn. | |
virtual bool | PaintChildren (vtkContext2D *painter) |
Paint the children of the item, should be called whenever the children need to be rendered. | |
virtual void | ReleaseGraphicsResources () |
Release graphics resources hold by the item. | |
vtkIdType | AddItem (vtkAbstractContextItem *item) |
Add child items to this item. | |
bool | RemoveItem (vtkAbstractContextItem *item) |
Remove child item from this item. | |
bool | RemoveItem (vtkIdType index) |
Remove child item from this item. | |
vtkAbstractContextItem * | GetItem (vtkIdType index) |
Get the item at the specified index. | |
vtkIdType | GetItemIndex (vtkAbstractContextItem *item) |
Get the index of the specified item in itemIndex. | |
vtkIdType | GetNumberOfItems () |
Get the number of child items. | |
void | ClearItems () |
Remove all child items from this item. | |
vtkIdType | Raise (vtkIdType index) |
Raises the child to the top of the item's stack. | |
virtual vtkIdType | StackAbove (vtkIdType index, vtkIdType under) |
Raises the child above the under sibling. | |
vtkIdType | Lower (vtkIdType index) |
Lowers the child to the bottom of the item's stack. | |
virtual vtkIdType | StackUnder (vtkIdType child, vtkIdType above) |
Lowers the child under the above sibling. | |
virtual bool | Hit (const vtkContextMouseEvent &mouse) |
Return true if the supplied x, y coordinate is inside the item. | |
virtual vtkAbstractContextItem * | GetPickedItem (const vtkContextMouseEvent &mouse) |
Return the item under the mouse. | |
virtual bool | MouseEnterEvent (const vtkContextMouseEvent &mouse) |
Mouse enter event. | |
virtual bool | MouseMoveEvent (const vtkContextMouseEvent &mouse) |
Mouse move event. | |
virtual bool | MouseLeaveEvent (const vtkContextMouseEvent &mouse) |
Mouse leave event. | |
virtual bool | MouseButtonPressEvent (const vtkContextMouseEvent &mouse) |
Mouse button down event Return true if the item holds the event, false if the event can be propagated to other items. | |
virtual bool | MouseButtonReleaseEvent (const vtkContextMouseEvent &mouse) |
Mouse button release event. | |
virtual bool | MouseDoubleClickEvent (const vtkContextMouseEvent &mouse) |
Mouse button double click event. | |
virtual bool | MouseWheelEvent (const vtkContextMouseEvent &mouse, int delta) |
Mouse wheel event, positive delta indicates forward movement of the wheel. | |
virtual bool | KeyPressEvent (const vtkContextKeyEvent &key) |
Key press event. | |
virtual bool | KeyReleaseEvent (const vtkContextKeyEvent &key) |
Key release event. | |
virtual void | SetScene (vtkContextScene *scene) |
Set the vtkContextScene for the item, always set for an item in a scene. | |
vtkContextScene * | GetScene () |
Get the vtkContextScene for the item, always set for an item in a scene. | |
virtual void | SetParent (vtkAbstractContextItem *parent) |
Set the parent item. | |
vtkAbstractContextItem * | GetParent () |
Get the parent item. | |
virtual vtkVector2f | MapToParent (const vtkVector2f &point) |
Maps the point to the parent coordinate system. | |
virtual vtkVector2f | MapFromParent (const vtkVector2f &point) |
Maps the point from the parent coordinate system. | |
virtual vtkVector2f | MapToScene (const vtkVector2f &point) |
Maps the point to the scene coordinate system. | |
virtual vtkVector2f | MapFromScene (const vtkVector2f &point) |
Maps the point from the scene coordinate system. | |
virtual bool | GetVisible () |
Get the visibility of the item (should it be drawn). | |
virtual void | SetVisible (bool) |
Set the visibility of the item (should it be drawn). | |
virtual bool | GetInteractive () |
Get if the item is interactive (should respond to mouse events). | |
virtual void | SetInteractive (bool) |
Set if the item is interactive (should respond to mouse events). | |
Public Member Functions inherited from vtkObject | |
vtkBaseTypeMacro (vtkObject, vtkObjectBase) | |
virtual void | DebugOn () |
Turn debugging output on. | |
virtual void | DebugOff () |
Turn debugging output off. | |
bool | GetDebug () |
Get the value of the debug flag. | |
void | SetDebug (bool debugFlag) |
Set the value of the debug flag. | |
virtual void | Modified () |
Update the modification time for this object. | |
virtual vtkMTimeType | GetMTime () |
Return this object's modified time. | |
void | PrintSelf (ostream &os, vtkIndent indent) override |
Methods invoked by print to print information about the object including superclasses. | |
void | RemoveObserver (unsigned long tag) |
void | RemoveObservers (unsigned long event) |
void | RemoveObservers (const char *event) |
void | RemoveAllObservers () |
vtkTypeBool | HasObserver (unsigned long event) |
vtkTypeBool | HasObserver (const char *event) |
vtkTypeBool | InvokeEvent (unsigned long event) |
vtkTypeBool | InvokeEvent (const char *event) |
std::string | GetObjectDescription () const override |
The object description printed in messages and PrintSelf output. | |
unsigned long | AddObserver (unsigned long event, vtkCommand *, float priority=0.0f) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. | |
unsigned long | AddObserver (const char *event, vtkCommand *, float priority=0.0f) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. | |
vtkCommand * | GetCommand (unsigned long tag) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. | |
void | RemoveObserver (vtkCommand *) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. | |
void | RemoveObservers (unsigned long event, vtkCommand *) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. | |
void | RemoveObservers (const char *event, vtkCommand *) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. | |
vtkTypeBool | HasObserver (unsigned long event, vtkCommand *) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. | |
vtkTypeBool | HasObserver (const char *event, vtkCommand *) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. | |
template<class U , class T > | |
unsigned long | AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f) |
Overloads to AddObserver that allow developers to add class member functions as callbacks for events. | |
template<class U , class T > | |
unsigned long | AddObserver (unsigned long event, U observer, void(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f) |
Overloads to AddObserver that allow developers to add class member functions as callbacks for events. | |
template<class U , class T > | |
unsigned long | AddObserver (unsigned long event, U observer, bool(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f) |
Allow user to set the AbortFlagOn() with the return value of the callback method. | |
vtkTypeBool | InvokeEvent (unsigned long event, void *callData) |
This method invokes an event and return whether the event was aborted or not. | |
vtkTypeBool | InvokeEvent (const char *event, void *callData) |
This method invokes an event and return whether the event was aborted or not. | |
virtual void | SetObjectName (const std::string &objectName) |
Set/get the name of this object for reporting purposes. | |
virtual std::string | GetObjectName () const |
Set/get the name of this object for reporting purposes. | |
Public Member Functions inherited from vtkObjectBase | |
const char * | GetClassName () const |
Return the class name as a string. | |
virtual std::string | GetObjectDescription () const |
The object description printed in messages and PrintSelf output. | |
virtual vtkTypeBool | IsA (const char *name) |
Return 1 if this class is the same type of (or a subclass of) the named class. | |
virtual vtkIdType | GetNumberOfGenerationsFromBase (const char *name) |
Given the name of a base class of this class type, return the distance of inheritance between this class type and the named class (how many generations of inheritance are there between this class and the named class). | |
virtual void | Delete () |
Delete a VTK object. | |
virtual void | FastDelete () |
Delete a reference to this object. | |
void | InitializeObjectBase () |
void | Print (ostream &os) |
Print an object to an ostream. | |
void | Register (vtkObjectBase *o) |
Increase the reference count (mark as used by another object). | |
virtual void | UnRegister (vtkObjectBase *o) |
Decrease the reference count (release by another object). | |
int | GetReferenceCount () |
Return the current reference count of this object. | |
void | SetReferenceCount (int) |
Sets the reference count. | |
bool | GetIsInMemkind () const |
A local state flag that remembers whether this object lives in the normal or extended memory space. | |
virtual void | PrintHeader (ostream &os, vtkIndent indent) |
Methods invoked by print to print information about the object including superclasses. | |
virtual void | PrintTrailer (ostream &os, vtkIndent indent) |
Methods invoked by print to print information about the object including superclasses. | |
virtual bool | UsesGarbageCollector () const |
Indicate whether the class uses vtkGarbageCollector or not. | |
Static Public Member Functions | |
static vtkTreeHeatmapItem * | New () |
static vtkTypeBool | IsTypeOf (const char *type) |
static vtkTreeHeatmapItem * | SafeDownCast (vtkObjectBase *o) |
Static Public Member Functions inherited from vtkContextItem | |
static vtkTypeBool | IsTypeOf (const char *type) |
static vtkContextItem * | SafeDownCast (vtkObjectBase *o) |
Static Public Member Functions inherited from vtkAbstractContextItem | |
static vtkTypeBool | IsTypeOf (const char *type) |
static vtkAbstractContextItem * | SafeDownCast (vtkObjectBase *o) |
Static Public Member Functions inherited from vtkObject | |
static vtkObject * | New () |
Create an object with Debug turned off, modified time initialized to zero, and reference counting on. | |
static void | BreakOnError () |
This method is called when vtkErrorMacro executes. | |
static void | SetGlobalWarningDisplay (vtkTypeBool val) |
This is a global flag that controls whether any debug, warning or error messages are displayed. | |
static void | GlobalWarningDisplayOn () |
This is a global flag that controls whether any debug, warning or error messages are displayed. | |
static void | GlobalWarningDisplayOff () |
This is a global flag that controls whether any debug, warning or error messages are displayed. | |
static vtkTypeBool | GetGlobalWarningDisplay () |
This is a global flag that controls whether any debug, warning or error messages are displayed. | |
Static Public Member Functions inherited from vtkObjectBase | |
static vtkTypeBool | IsTypeOf (const char *name) |
Return 1 if this class type is the same type of (or a subclass of) the named class. | |
static vtkIdType | GetNumberOfGenerationsFromBaseType (const char *name) |
Given a the name of a base class of this class type, return the distance of inheritance between this class type and the named class (how many generations of inheritance are there between this class and the named class). | |
static vtkObjectBase * | New () |
Create an object with Debug turned off, modified time initialized to zero, and reference counting on. | |
static void | SetMemkindDirectory (const char *directoryname) |
The name of a directory, ideally mounted -o dax, to memory map an extended memory space within. | |
static bool | GetUsingMemkind () |
A global state flag that controls whether vtkObjects are constructed in the usual way (the default) or within the extended memory space. | |
Protected Member Functions | |
virtual vtkObjectBase * | NewInstanceInternal () const |
vtkTreeHeatmapItem () | |
~vtkTreeHeatmapItem () override | |
bool | Paint (vtkContext2D *painter) override |
Paints the tree & associated table as a heatmap. | |
void | CollapseHeatmapRows () |
Mark heatmap rows as hidden when a subtree is collapsed. | |
void | CollapseHeatmapColumns () |
Mark heatmap columns as hidden when a subtree is collapsed. | |
Protected Member Functions inherited from vtkContextItem | |
virtual vtkObjectBase * | NewInstanceInternal () const |
vtkContextItem ()=default | |
~vtkContextItem () override | |
Protected Member Functions inherited from vtkAbstractContextItem | |
virtual vtkObjectBase * | NewInstanceInternal () const |
vtkAbstractContextItem () | |
~vtkAbstractContextItem () override | |
virtual void | ReleaseGraphicsCache () |
Release cache entries created by this context item. | |
Protected Member Functions inherited from vtkObject | |
vtkObject () | |
~vtkObject () override | |
void | RegisterInternal (vtkObjectBase *, vtkTypeBool check) override |
void | UnRegisterInternal (vtkObjectBase *, vtkTypeBool check) override |
void | InternalGrabFocus (vtkCommand *mouseEvents, vtkCommand *keypressEvents=nullptr) |
These methods allow a command to exclusively grab all events. | |
void | InternalReleaseFocus () |
These methods allow a command to exclusively grab all events. | |
Protected Member Functions inherited from vtkObjectBase | |
vtkObjectBase () | |
virtual | ~vtkObjectBase () |
virtual void | RegisterInternal (vtkObjectBase *, vtkTypeBool check) |
virtual void | UnRegisterInternal (vtkObjectBase *, vtkTypeBool check) |
virtual void | ReportReferences (vtkGarbageCollector *) |
virtual void | ObjectFinalize () |
vtkObjectBase (const vtkObjectBase &) | |
void | operator= (const vtkObjectBase &) |
Protected Attributes | |
vtkSmartPointer< vtkDendrogramItem > | Dendrogram |
vtkSmartPointer< vtkDendrogramItem > | ColumnDendrogram |
vtkSmartPointer< vtkHeatmapItem > | Heatmap |
int | Orientation |
Protected Attributes inherited from vtkContextItem | |
double | Opacity = 1.0 |
vtkContextTransform * | Transform = nullptr |
Protected Attributes inherited from vtkAbstractContextItem | |
vtkContextScene * | Scene |
Point to the scene the item is on - can be null. | |
vtkAbstractContextItem * | Parent |
Point to the parent item - can be null. | |
vtkContextScenePrivate * | Children |
This structure provides a list of children, along with convenience functions to paint the children etc. | |
bool | Visible |
Store the visibility of the item (default is true). | |
bool | Interactive |
Store whether the item should respond to interactions (default is true). | |
Protected Attributes inherited from vtkObject | |
bool | Debug |
vtkTimeStamp | MTime |
vtkSubjectHelper * | SubjectHelper |
std::string | ObjectName |
Protected Attributes inherited from vtkObjectBase | |
std::atomic< int32_t > | ReferenceCount |
vtkWeakPointerBase ** | WeakPointers |
Additional Inherited Members | |
Static Protected Member Functions inherited from vtkObjectBase | |
static vtkMallocingFunction | GetCurrentMallocFunction () |
static vtkReallocingFunction | GetCurrentReallocFunction () |
static vtkFreeingFunction | GetCurrentFreeFunction () |
static vtkFreeingFunction | GetAlternateFreeFunction () |
A 2D graphics item for rendering a tree and an associated heatmap.
This item draws a tree and a heatmap as a part of a vtkContextScene. The input tree's vertex data must contain at least two arrays. The first required array is a vtkStringArray called "node name". This array corresponds to the first column of the input table. The second required array is a scalar array called "node weight". This array is used by vtkTreeLayoutStrategy to set any particular node's distance from the root of the tree.
The vtkNewickTreeReader automatically initializes both of these required arrays in its output tree.
.SEE ALSO vtkDendrogramItem vtkHeatmapItem vtkTree vtkTable vtkNewickTreeReader
Definition at line 44 of file vtkTreeHeatmapItem.h.
Definition at line 48 of file vtkTreeHeatmapItem.h.
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Return 1 if this class is the same type of (or a subclass of) the named class.
Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.
Reimplemented from vtkContextItem.
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Reimplemented from vtkContextItem.
vtkTreeHeatmapItem * vtkTreeHeatmapItem::NewInstance | ( | ) | const |
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Methods invoked by print to print information about the object including superclasses.
Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from vtkContextItem.
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Set the tree that this item draws.
Note that this tree's vertex data must contain a vtkStringArray called "node name". Additionally, this array must contain the same values as the first column of the input table. See SetTable for more information. The vtkNewickTreeReader automatically creates this required array for you.
vtkTree * vtkTreeHeatmapItem::GetTree | ( | ) |
Get the tree that this item draws.
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Set a tree to be drawn for the columns of the heatmap.
This tree's vertex data must contain a vtkStringArray called "node name" that corresponds to the names of the columns in the heatmap.
vtkTree * vtkTreeHeatmapItem::GetColumnTree | ( | ) |
Get the tree that represents the columns of the heatmap (if one has been set).
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Set the table that this item draws.
The first column of the table must contain the names of the rows. These names, in turn, must correspond with the nodes names in the input tree. See SetTree for more information.
vtkTable * vtkTreeHeatmapItem::GetTable | ( | ) |
Get the table that this item draws.
vtkDendrogramItem * vtkTreeHeatmapItem::GetDendrogram | ( | ) |
Get/Set the dendrogram contained by this item.
void vtkTreeHeatmapItem::SetDendrogram | ( | vtkDendrogramItem * | dendrogram | ) |
Get/Set the dendrogram contained by this item.
vtkHeatmapItem * vtkTreeHeatmapItem::GetHeatmap | ( | ) |
Get/Set the heatmap contained by this item.
void vtkTreeHeatmapItem::SetHeatmap | ( | vtkHeatmapItem * | heatmap | ) |
Get/Set the heatmap contained by this item.
void vtkTreeHeatmapItem::ReorderTable | ( | ) |
Reorder the rows in the table so they match the order of the leaf nodes in our tree.
void vtkTreeHeatmapItem::ReverseTableRows | ( | ) |
Reverse the order of the rows in our input table.
This is used to simplify the table layout for DOWN_TO_UP and RIGHT_TO_LEFT orientations.
void vtkTreeHeatmapItem::ReverseTableColumns | ( | ) |
Reverse the order of the rows in our input table.
This is used to simplify the table layout for DOWN_TO_UP and UP_TO_DOWN orientations.
void vtkTreeHeatmapItem::SetOrientation | ( | int | orientation | ) |
Set which way the tree / heatmap should face within the visualization.
The default is for both components to be drawn left to right.
int vtkTreeHeatmapItem::GetOrientation | ( | ) |
Get the current orientation.
void vtkTreeHeatmapItem::GetBounds | ( | double | bounds[4] | ) |
Get the bounds of this item (xMin, xMax, yMin, Max) in pixel coordinates.
void vtkTreeHeatmapItem::GetCenter | ( | double | center[2] | ) |
Get the center point of this item in pixel coordinates.
void vtkTreeHeatmapItem::GetSize | ( | double | size[2] | ) |
Get the size of this item in pixel coordinates.
void vtkTreeHeatmapItem::CollapseToNumberOfLeafNodes | ( | unsigned int | n | ) |
Collapse subtrees until there are only n leaf nodes left in the tree.
The leaf nodes that remain are those that are closest to the root. Any subtrees that were collapsed prior to this function being called may be re-expanded. Use this function instead of this->GetDendrogram->CollapseToNumberOfLeafNodes(), as this function also handles the hiding of heatmap rows that correspond to newly collapsed subtrees.
float vtkTreeHeatmapItem::GetTreeLineWidth | ( | ) |
Get/Set how wide the edges of the trees should be.
Default is one pixel.
void vtkTreeHeatmapItem::SetTreeLineWidth | ( | float | width | ) |
Get/Set how wide the edges of the trees should be.
Default is one pixel.
vtkTree * vtkTreeHeatmapItem::GetPrunedTree | ( | ) |
Deprecated.
Use this->GetDendrogram()->GetPrunedTree() instead.
void vtkTreeHeatmapItem::SetTreeColorArray | ( | const char * | arrayName | ) |
Deprecated.
Use this->GetDendrogram()->SetColorArray(const char *arrayName) instead.
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Returns true if the transform is interactive, false otherwise.
Reimplemented from vtkAbstractContextItem.
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Propagate any double click onto the dendrogram to check if any subtrees should be collapsed or expanded.
Reimplemented from vtkAbstractContextItem.
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Paints the tree & associated table as a heatmap.
Reimplemented from vtkAbstractContextItem.
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Mark heatmap rows as hidden when a subtree is collapsed.
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Mark heatmap columns as hidden when a subtree is collapsed.
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Definition at line 212 of file vtkTreeHeatmapItem.h.
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Definition at line 213 of file vtkTreeHeatmapItem.h.
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Definition at line 214 of file vtkTreeHeatmapItem.h.
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Definition at line 215 of file vtkTreeHeatmapItem.h.