vtkNetCDFReader Class Reference

A superclass for reading netCDF files. More...

#include <vtkNetCDFReader.h>

Inheritance diagram for vtkNetCDFReader:

Collaboration diagram for vtkNetCDFReader:

Public Types
typedef vtkDataObjectAlgorithm	Superclass
Public Types inherited from vtkDataObjectAlgorithm
typedef vtkAlgorithm	Superclass
Public Types inherited from vtkAlgorithm
enum	DesiredOutputPrecision { SINGLE_PRECISION , DOUBLE_PRECISION , DEFAULT_PRECISION }
	Values used for setting the desired output precision for various algorithms. More...
typedef vtkObject	Superclass

Public Member Functions
virtual vtkTypeBool	IsA (const char *type)
	Return 1 if this class is the same type of (or a subclass of) the named class.
vtkNetCDFReader *	NewInstance () const
void	PrintSelf (ostream &os, vtkIndent indent) override
	Methods invoked by print to print information about the object including superclasses.
virtual void	SetFileName (VTK_FILEPATH const char *filename)
	vtkGetFilePathMacro (FileName)
int	UpdateMetaData ()
	Update the meta data from the current file.
virtual vtkStringArray *	GetAllVariableArrayNames ()
	Convenience method to get a list of variable arrays.
virtual void	SetDimensions (const char *dimensions)
	Loads the grid with the given dimensions.
bool	ComputeArraySelection ()
	Enables arrays in VariableArraySelection depending on Dimensions.
std::string	QueryArrayUnits (const char *ArrayName)
	Get units attached to a particular array in the netcdf file.
virtual void	SetAccessor (vtkNetCDFAccessor *)
virtual vtkNetCDFAccessor *	GetAccessor ()
virtual int	GetNumberOfVariableArrays ()
	Variable array selection.
virtual const char *	GetVariableArrayName (int index)
	Variable array selection.
virtual int	GetVariableArrayStatus (const char *name)
	Variable array selection.
virtual void	SetVariableArrayStatus (const char *name, int status)
	Variable array selection.
virtual vtkStringArray *	GetVariableDimensions ()
	Returns an array with string encodings for the dimensions used in each of the variables.
virtual vtkStringArray *	GetAllDimensions ()
	Returns an array with string encodings for the dimension combinations used in the variables.
virtual vtkTypeBool	GetReplaceFillValueWithNan ()
	If on, any float or double variable read that has a _FillValue attribute will have that fill value replaced with a not-a-number (NaN) value.
virtual void	SetReplaceFillValueWithNan (vtkTypeBool)
	If on, any float or double variable read that has a _FillValue attribute will have that fill value replaced with a not-a-number (NaN) value.
virtual void	ReplaceFillValueWithNanOn ()
	If on, any float or double variable read that has a _FillValue attribute will have that fill value replaced with a not-a-number (NaN) value.
virtual void	ReplaceFillValueWithNanOff ()
	If on, any float or double variable read that has a _FillValue attribute will have that fill value replaced with a not-a-number (NaN) value.
virtual char *	GetTimeUnits ()
	Access to the time dimensions units.
virtual char *	GetCalendar ()
	Access to the time dimensions units.
Public Member Functions inherited from vtkDataObjectAlgorithm
virtual vtkTypeBool	IsA (const char *type)
	Return 1 if this class is the same type of (or a subclass of) the named class.
vtkDataObjectAlgorithm *	NewInstance () const
void	PrintSelf (ostream &os, vtkIndent indent) override
	Methods invoked by print to print information about the object including superclasses.
vtkTypeBool	ProcessRequest (vtkInformation *, vtkInformationVector **, vtkInformationVector *) override
	see vtkAlgorithm for details
vtkDataObject *	GetInput ()
vtkDataObject *	GetInput (int port)
vtkDataObject *	GetOutput ()
	Get the output data object for a port on this algorithm.
vtkDataObject *	GetOutput (int)
	Get the output data object for a port on this algorithm.
virtual void	SetOutput (vtkDataObject *d)
	Get the output data object for a port on this algorithm.
void	SetInputData (vtkDataObject *)
	Assign a data object as input.
void	SetInputData (int, vtkDataObject *)
	Assign a data object as input.
void	AddInputData (vtkDataObject *)
	Assign a data object as input.
void	AddInputData (int, vtkDataObject *)
	Assign a data object as input.
Public Member Functions inherited from vtkAlgorithm
virtual vtkTypeBool	IsA (const char *type)
	Return 1 if this class is the same type of (or a subclass of) the named class.
vtkAlgorithm *	NewInstance () const
void	PrintSelf (ostream &os, vtkIndent indent) override
	Methods invoked by print to print information about the object including superclasses.
vtkTypeBool	HasExecutive ()
	Check whether this algorithm has an assigned executive.
vtkExecutive *	GetExecutive ()
	Get this algorithm's executive.
virtual void	SetExecutive (vtkExecutive *executive)
	Set this algorithm's executive.
virtual vtkTypeBool	ProcessRequest (vtkInformation *request, vtkInformationVector **inInfo, vtkInformationVector *outInfo)
	Upstream/Downstream requests form the generalized interface through which executives invoke a algorithm's functionality.
vtkTypeBool	ProcessRequest (vtkInformation *request, vtkCollection *inInfo, vtkInformationVector *outInfo)
	Version of ProcessRequest() that is wrapped.
virtual int	ComputePipelineMTime (vtkInformation *request, vtkInformationVector **inInfoVec, vtkInformationVector *outInfoVec, int requestFromOutputPort, vtkMTimeType *mtime)
	A special version of ProcessRequest meant specifically for the pipeline modified time request.
virtual int	ModifyRequest (vtkInformation *request, int when)
	This method gives the algorithm a chance to modify the contents of a request before or after (specified in the when argument) it is forwarded.
vtkInformation *	GetInputPortInformation (int port)
	Get the information object associated with an input port.
vtkInformation *	GetOutputPortInformation (int port)
	Get the information object associated with an output port.
int	GetNumberOfInputPorts ()
	Get the number of input ports used by the algorithm.
int	GetNumberOfOutputPorts ()
	Get the number of output ports provided by the algorithm.
void	SetAbortExecuteAndUpdateTime ()
	Set AbortExecute Flag and update LastAbortTime.
void	UpdateProgress (double amount)
	Update the progress of the process object.
bool	CheckAbort ()
	Checks to see if this filter should abort.
vtkInformation *	GetInputArrayInformation (int idx)
	Get the info object for the specified input array to this algorithm.
void	RemoveAllInputs ()
	Remove all the input data.
vtkDataObject *	GetOutputDataObject (int port)
	Get the data object that will contain the algorithm output for the given port.
vtkDataObject *	GetInputDataObject (int port, int connection)
	Get the data object that will contain the algorithm input for the given port and given connection.
virtual void	RemoveInputConnection (int port, vtkAlgorithmOutput *input)
	Remove a connection from the given input port index.
virtual void	RemoveInputConnection (int port, int idx)
	Remove a connection given by index idx.
virtual void	RemoveAllInputConnections (int port)
	Removes all input connections.
virtual void	SetInputDataObject (int port, vtkDataObject *data)
	Sets the data-object as an input on the given port index.
virtual void	SetInputDataObject (vtkDataObject *data)
virtual void	AddInputDataObject (int port, vtkDataObject *data)
	Add the data-object as an input to this given port.
virtual void	AddInputDataObject (vtkDataObject *data)
vtkAlgorithmOutput *	GetOutputPort (int index)
	Get a proxy object corresponding to the given output port of this algorithm.
vtkAlgorithmOutput *	GetOutputPort ()
int	GetNumberOfInputConnections (int port)
	Get the number of inputs currently connected to a port.
int	GetTotalNumberOfInputConnections ()
	Get the total number of inputs for this algorithm.
vtkAlgorithmOutput *	GetInputConnection (int port, int index)
	Get the algorithm output port connected to an input port.
vtkAlgorithm *	GetInputAlgorithm (int port, int index, int &algPort)
	Returns the algorithm and the output port index of that algorithm connected to a port-index pair.
vtkAlgorithm *	GetInputAlgorithm (int port, int index)
	Returns the algorithm connected to a port-index pair.
vtkAlgorithm *	GetInputAlgorithm ()
	Equivalent to GetInputAlgorithm(0, 0).
vtkExecutive *	GetInputExecutive (int port, int index)
	Returns the executive associated with a particular input connection.
vtkExecutive *	GetInputExecutive ()
	Equivalent to GetInputExecutive(0, 0)
vtkInformation *	GetInputInformation (int port, int index)
	Return the information object that is associated with a particular input connection.
vtkInformation *	GetInputInformation ()
	Equivalent to GetInputInformation(0, 0)
vtkInformation *	GetOutputInformation (int port)
	Return the information object that is associated with a particular output port.
virtual vtkTypeBool	Update (int port, vtkInformationVector *requests)
	This method enables the passing of data requests to the algorithm to be used during execution (in addition to bringing a particular port up-to-date).
virtual vtkTypeBool	Update (vtkInformation *requests)
	Convenience method to update an algorithm after passing requests to its first output port.
virtual int	UpdatePiece (int piece, int numPieces, int ghostLevels, const int extents[6]=nullptr)
	Convenience method to update an algorithm after passing requests to its first output port.
virtual VTK_UNBLOCKTHREADS int	UpdateExtent (const int extents[6])
	Convenience method to update an algorithm after passing requests to its first output port.
virtual VTK_UNBLOCKTHREADS int	UpdateTimeStep (double time, int piece=-1, int numPieces=1, int ghostLevels=0, const int extents[6]=nullptr)
	Convenience method to update an algorithm after passing requests to its first output port.
virtual VTK_UNBLOCKTHREADS void	UpdateInformation ()
	Bring the algorithm's information up-to-date.
virtual void	UpdateDataObject ()
	Create output object(s).
virtual void	PropagateUpdateExtent ()
	Propagate meta-data upstream.
virtual VTK_UNBLOCKTHREADS void	UpdateWholeExtent ()
	Bring this algorithm's outputs up-to-date.
void	ConvertTotalInputToPortConnection (int ind, int &port, int &conn)
	Convenience routine to convert from a linear ordering of input connections to a port/connection pair.
void	RemoveNoPriorTemporalAccessInformationKey ()
	Removes any information key vtkStreamingDemandDrivenPipeline::NO_PRIOR_TEMPORAL_ACCESS() to all output ports of this vtkAlgorithm.
virtual vtkInformation *	GetInformation ()
	Set/Get the information object associated with this algorithm.
virtual void	SetInformation (vtkInformation *)
	Set/Get the information object associated with this algorithm.
bool	UsesGarbageCollector () const override
	Participate in garbage collection.
virtual void	SetAbortExecute (vtkTypeBool)
	Set/Get the AbortExecute flag for the process object.
virtual vtkTypeBool	GetAbortExecute ()
	Set/Get the AbortExecute flag for the process object.
virtual void	AbortExecuteOn ()
	Set/Get the AbortExecute flag for the process object.
virtual void	AbortExecuteOff ()
	Set/Get the AbortExecute flag for the process object.
virtual double	GetProgress ()
	Get the execution progress of a process object.
void	SetContainerAlgorithm (vtkAlgorithm *containerAlg)
	Set/get a Container algorithm for this algorithm.
vtkAlgorithm *	GetContainerAlgorithm ()
	Set/get a Container algorithm for this algorithm.
virtual void	SetAbortOutput (bool)
	Set/Get an internal variable used to communicate between the algorithm and executive.
virtual bool	GetAbortOutput ()
	Set/Get an internal variable used to communicate between the algorithm and executive.
void	SetProgressShiftScale (double shift, double scale)
	Specify the shift and scale values to use to apply to the progress amount when UpdateProgress is called.
virtual double	GetProgressShift ()
	Specify the shift and scale values to use to apply to the progress amount when UpdateProgress is called.
virtual double	GetProgressScale ()
	Specify the shift and scale values to use to apply to the progress amount when UpdateProgress is called.
void	SetProgressText (const char *ptext)
	Set the current text message associated with the progress state.
virtual char *	GetProgressText ()
	Set the current text message associated with the progress state.
virtual unsigned long	GetErrorCode ()
	The error code contains a possible error that occurred while reading or writing the file.
void	SetInputArrayToProcess (const char *name, int fieldAssociation)
	Set the input data arrays that this algorithm will process.
virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, const char *name)
	Set the input data arrays that this algorithm will process.
virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, int fieldAttributeType)
	Set the input data arrays that this algorithm will process.
virtual void	SetInputArrayToProcess (int idx, vtkInformation *info)
	Set the input data arrays that this algorithm will process.
virtual void	SetInputArrayToProcess (int idx, int port, int connection, const char *fieldAssociation, const char *attributeTypeorName)
	Set the input data arrays that this algorithm will process.
virtual void	SetInputConnection (int port, vtkAlgorithmOutput *input)
	Set the connection for the given input port index.
virtual void	SetInputConnection (vtkAlgorithmOutput *input)
	Set the connection for the given input port index.
virtual void	AddInputConnection (int port, vtkAlgorithmOutput *input)
	Add a connection to the given input port index.
virtual void	AddInputConnection (vtkAlgorithmOutput *input)
	Add a connection to the given input port index.
virtual VTK_UNBLOCKTHREADS void	Update (int port)
	Bring this algorithm's outputs up-to-date.
virtual VTK_UNBLOCKTHREADS void	Update ()
	Bring this algorithm's outputs up-to-date.
virtual void	SetReleaseDataFlag (vtkTypeBool)
	Turn release data flag on or off for all output ports.
virtual vtkTypeBool	GetReleaseDataFlag ()
	Turn release data flag on or off for all output ports.
void	ReleaseDataFlagOn ()
	Turn release data flag on or off for all output ports.
void	ReleaseDataFlagOff ()
	Turn release data flag on or off for all output ports.
int	UpdateExtentIsEmpty (vtkInformation *pinfo, vtkDataObject *output)
	This detects when the UpdateExtent will generate no data This condition is satisfied when the UpdateExtent has zero volume (0,-1,...) or the UpdateNumberOfPieces is 0.
int	UpdateExtentIsEmpty (vtkInformation *pinfo, int extentType)
	This detects when the UpdateExtent will generate no data This condition is satisfied when the UpdateExtent has zero volume (0,-1,...) or the UpdateNumberOfPieces is 0.
int *	GetUpdateExtent ()
	These functions return the update extent for output ports that use 3D extents.
int *	GetUpdateExtent (int port)
	These functions return the update extent for output ports that use 3D extents.
void	GetUpdateExtent (int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)
	These functions return the update extent for output ports that use 3D extents.
void	GetUpdateExtent (int port, int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)
	These functions return the update extent for output ports that use 3D extents.
void	GetUpdateExtent (int extent[6])
	These functions return the update extent for output ports that use 3D extents.
void	GetUpdateExtent (int port, int extent[6])
	These functions return the update extent for output ports that use 3D extents.
int	GetUpdatePiece ()
	These functions return the update extent for output ports that use piece extents.
int	GetUpdatePiece (int port)
	These functions return the update extent for output ports that use piece extents.
int	GetUpdateNumberOfPieces ()
	These functions return the update extent for output ports that use piece extents.
int	GetUpdateNumberOfPieces (int port)
	These functions return the update extent for output ports that use piece extents.
int	GetUpdateGhostLevel ()
	These functions return the update extent for output ports that use piece extents.
int	GetUpdateGhostLevel (int port)
	These functions return the update extent for output ports that use piece extents.
void	SetProgressObserver (vtkProgressObserver *)
	If an ProgressObserver is set, the algorithm will report progress through it rather than directly.
virtual vtkProgressObserver *	GetProgressObserver ()
	If an ProgressObserver is set, the algorithm will report progress through it rather than directly.
void	SetNoPriorTemporalAccessInformationKey (int key)
	Set to all output ports of this algorithm the information key vtkStreamingDemandDrivenPipeline::NO_PRIOR_TEMPORAL_ACCESS().
void	SetNoPriorTemporalAccessInformationKey ()
	Set to all output ports of this algorithm the information key vtkStreamingDemandDrivenPipeline::NO_PRIOR_TEMPORAL_ACCESS().
Public Member Functions inherited from vtkObject
	vtkBaseTypeMacro (vtkObject, vtkObjectBase)
virtual void	DebugOn ()
	Turn debugging output on.
virtual void	DebugOff ()
	Turn debugging output off.
bool	GetDebug ()
	Get the value of the debug flag.
void	SetDebug (bool debugFlag)
	Set the value of the debug flag.
virtual void	Modified ()
	Update the modification time for this object.
virtual vtkMTimeType	GetMTime ()
	Return this object's modified time.
void	PrintSelf (ostream &os, vtkIndent indent) override
	Methods invoked by print to print information about the object including superclasses.
void	RemoveObserver (unsigned long tag)
void	RemoveObservers (unsigned long event)
void	RemoveObservers (const char *event)
void	RemoveAllObservers ()
vtkTypeBool	HasObserver (unsigned long event)
vtkTypeBool	HasObserver (const char *event)
vtkTypeBool	InvokeEvent (unsigned long event)
vtkTypeBool	InvokeEvent (const char *event)
std::string	GetObjectDescription () const override
	The object description printed in messages and PrintSelf output.
unsigned long	AddObserver (unsigned long event, vtkCommand *, float priority=0.0f)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object.
unsigned long	AddObserver (const char *event, vtkCommand *, float priority=0.0f)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object.
vtkCommand *	GetCommand (unsigned long tag)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object.
void	RemoveObserver (vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object.
void	RemoveObservers (unsigned long event, vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object.
void	RemoveObservers (const char *event, vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object.
vtkTypeBool	HasObserver (unsigned long event, vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object.
vtkTypeBool	HasObserver (const char *event, vtkCommand *)
	Allow people to add/remove/invoke observers (callbacks) to any VTK object.
template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f)
	Overloads to AddObserver that allow developers to add class member functions as callbacks for events.
template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f)
	Overloads to AddObserver that allow developers to add class member functions as callbacks for events.
template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, bool(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f)
	Allow user to set the AbortFlagOn() with the return value of the callback method.
vtkTypeBool	InvokeEvent (unsigned long event, void *callData)
	This method invokes an event and return whether the event was aborted or not.
vtkTypeBool	InvokeEvent (const char *event, void *callData)
	This method invokes an event and return whether the event was aborted or not.
virtual void	SetObjectName (const std::string &objectName)
	Set/get the name of this object for reporting purposes.
virtual std::string	GetObjectName () const
	Set/get the name of this object for reporting purposes.
Public Member Functions inherited from vtkObjectBase
const char *	GetClassName () const
	Return the class name as a string.
virtual std::string	GetObjectDescription () const
	The object description printed in messages and PrintSelf output.
virtual vtkTypeBool	IsA (const char *name)
	Return 1 if this class is the same type of (or a subclass of) the named class.
virtual vtkIdType	GetNumberOfGenerationsFromBase (const char *name)
	Given the name of a base class of this class type, return the distance of inheritance between this class type and the named class (how many generations of inheritance are there between this class and the named class).
virtual void	Delete ()
	Delete a VTK object.
virtual void	FastDelete ()
	Delete a reference to this object.
void	InitializeObjectBase ()
void	Print (ostream &os)
	Print an object to an ostream.
void	Register (vtkObjectBase *o)
	Increase the reference count (mark as used by another object).
virtual void	UnRegister (vtkObjectBase *o)
	Decrease the reference count (release by another object).
int	GetReferenceCount ()
	Return the current reference count of this object.
void	SetReferenceCount (int)
	Sets the reference count.
bool	GetIsInMemkind () const
	A local state flag that remembers whether this object lives in the normal or extended memory space.
virtual void	PrintHeader (ostream &os, vtkIndent indent)
	Methods invoked by print to print information about the object including superclasses.
virtual void	PrintTrailer (ostream &os, vtkIndent indent)
	Methods invoked by print to print information about the object including superclasses.

Static Public Member Functions
static vtkTypeBool	IsTypeOf (const char *type)
static vtkNetCDFReader *	SafeDownCast (vtkObjectBase *o)
static vtkNetCDFReader *	New ()
Static Public Member Functions inherited from vtkDataObjectAlgorithm
static vtkDataObjectAlgorithm *	New ()
static vtkTypeBool	IsTypeOf (const char *type)
static vtkDataObjectAlgorithm *	SafeDownCast (vtkObjectBase *o)
Static Public Member Functions inherited from vtkAlgorithm
static vtkAlgorithm *	New ()
static vtkTypeBool	IsTypeOf (const char *type)
static vtkAlgorithm *	SafeDownCast (vtkObjectBase *o)
static vtkInformationIntegerKey *	INPUT_IS_OPTIONAL ()
	Keys used to specify input port requirements.
static vtkInformationIntegerKey *	INPUT_IS_REPEATABLE ()
static vtkInformationInformationVectorKey *	INPUT_REQUIRED_FIELDS ()
static vtkInformationStringVectorKey *	INPUT_REQUIRED_DATA_TYPE ()
static vtkInformationInformationVectorKey *	INPUT_ARRAYS_TO_PROCESS ()
static vtkInformationIntegerKey *	INPUT_PORT ()
static vtkInformationIntegerKey *	INPUT_CONNECTION ()
static vtkInformationIntegerKey *	CAN_PRODUCE_SUB_EXTENT ()
	This key tells the executive that a particular output port is capable of producing an arbitrary subextent of the whole extent.
static vtkInformationIntegerKey *	CAN_HANDLE_PIECE_REQUEST ()
	Key that tells the pipeline that a particular algorithm can or cannot handle piece request.
static vtkInformationIntegerKey *	ABORTED ()
static void	SetDefaultExecutivePrototype (vtkExecutive *proto)
	If the DefaultExecutivePrototype is set, a copy of it is created in CreateDefaultExecutive() using NewInstance().
Static Public Member Functions inherited from vtkObject
static vtkObject *	New ()
	Create an object with Debug turned off, modified time initialized to zero, and reference counting on.
static void	BreakOnError ()
	This method is called when vtkErrorMacro executes.
static void	SetGlobalWarningDisplay (vtkTypeBool val)
	This is a global flag that controls whether any debug, warning or error messages are displayed.
static void	GlobalWarningDisplayOn ()
	This is a global flag that controls whether any debug, warning or error messages are displayed.
static void	GlobalWarningDisplayOff ()
	This is a global flag that controls whether any debug, warning or error messages are displayed.
static vtkTypeBool	GetGlobalWarningDisplay ()
	This is a global flag that controls whether any debug, warning or error messages are displayed.
Static Public Member Functions inherited from vtkObjectBase
static vtkTypeBool	IsTypeOf (const char *name)
	Return 1 if this class type is the same type of (or a subclass of) the named class.
static vtkIdType	GetNumberOfGenerationsFromBaseType (const char *name)
	Given a the name of a base class of this class type, return the distance of inheritance between this class type and the named class (how many generations of inheritance are there between this class and the named class).
static vtkObjectBase *	New ()
	Create an object with Debug turned off, modified time initialized to zero, and reference counting on.
static void	SetMemkindDirectory (const char *directoryname)
	The name of a directory, ideally mounted -o dax, to memory map an extended memory space within.
static bool	GetUsingMemkind ()
	A global state flag that controls whether vtkObjects are constructed in the usual way (the default) or within the extended memory space.

Protected Member Functions
virtual vtkObjectBase *	NewInstanceInternal () const
	vtkNetCDFReader ()
	~vtkNetCDFReader () override
int	RequestDataObject (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override
	This is called by the superclass.
int	RequestInformation (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override
int	RequestData (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override
vtkStdString	DescribeDimensions (int ncFD, const int *dimIds, int numDims)
	Convenience function for getting a string that describes a set of dimensions.
virtual int	ReadMetaData (int ncFD)
	Reads meta data and populates ivars.
virtual int	FillVariableDimensions (int ncFD)
	Fills the VariableDimensions array.
virtual int	IsTimeDimension (int ncFD, int dimId)
	Determines whether the given variable is a time dimension.
virtual vtkSmartPointer< vtkDoubleArray >	GetTimeValues (int ncFD, int dimId)
	Given a dimension already determined to be a time dimension (via a call to IsTimeDimension) returns an array with time values.
virtual bool	DimensionsAreForPointData (vtkIntArray *vtkNotUsed(dimensions))
	Called internally to determine whether a variable with the given set of dimensions should be loaded as point data (return true) or cell data (return false).
virtual void	GetUpdateExtentForOutput (vtkDataSet *output, int extent[6])
	Retrieves the update extent for the output object.
virtual int	LoadVariable (int ncFD, const char *varName, double time, vtkDataSet *output)
	Load the variable at the given time into the given data set.
Protected Member Functions inherited from vtkDataObjectAlgorithm
virtual vtkObjectBase *	NewInstanceInternal () const
	vtkDataObjectAlgorithm ()
	~vtkDataObjectAlgorithm () override
virtual int	RequestInformation (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector)
virtual int	RequestDataObject (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
	This is called by the superclass.
virtual int	RequestUpdateExtent (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
	This is called by the superclass.
virtual int	RequestUpdateTime (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
virtual int	RequestData (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
int	FillOutputPortInformation (int port, vtkInformation *info) override
	Fill the output port information objects for this algorithm.
int	FillInputPortInformation (int port, vtkInformation *info) override
	Fill the input port information objects for this algorithm.
Protected Member Functions inherited from vtkAlgorithm
virtual vtkObjectBase *	NewInstanceInternal () const
	vtkAlgorithm ()
	~vtkAlgorithm () override
bool	CheckUpstreamAbort ()
	Checks to see if an upstream filter has been aborted.
virtual int	FillInputPortInformation (int port, vtkInformation *info)
	Fill the input port information objects for this algorithm.
virtual int	FillOutputPortInformation (int port, vtkInformation *info)
	Fill the output port information objects for this algorithm.
virtual void	SetNumberOfInputPorts (int n)
	Set the number of input ports used by the algorithm.
virtual void	SetNumberOfOutputPorts (int n)
	Set the number of output ports provided by the algorithm.
int	InputPortIndexInRange (int index, const char *action)
int	OutputPortIndexInRange (int index, const char *action)
int	GetInputArrayAssociation (int idx, vtkInformationVector **inputVector)
	Get the association of the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass.
vtkInformation *	GetInputArrayFieldInformation (int idx, vtkInformationVector **inputVector)
	This method takes in an index (as specified in SetInputArrayToProcess) and a pipeline information vector.
virtual vtkExecutive *	CreateDefaultExecutive ()
	Create a default executive.
void	ReportReferences (vtkGarbageCollector *) override
virtual void	SetNthInputConnection (int port, int index, vtkAlgorithmOutput *input)
	Replace the Nth connection on the given input port.
virtual void	SetNumberOfInputConnections (int port, int n)
	Set the number of input connections on the given input port.
void	SetInputDataInternal (int port, vtkDataObject *input)
	These methods are used by subclasses to implement methods to set data objects directly as input.
void	AddInputDataInternal (int port, vtkDataObject *input)
int	GetInputArrayAssociation (int idx, int connection, vtkInformationVector **inputVector)
	Filters that have multiple connections on one port can use this signature.
int	GetInputArrayAssociation (int idx, vtkDataObject *input)
	Filters that have multiple connections on one port can use this signature.
vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector)
	Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass.
vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
	Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass.
vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
	Filters that have multiple connections on one port can use this signature.
vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
	Filters that have multiple connections on one port can use this signature.
vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input)
	Filters that have multiple connections on one port can use this signature.
vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input, int &association)
	Filters that have multiple connections on one port can use this signature.
vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector)
	Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass.
vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
	Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass.
vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
	Filters that have multiple connections on one port can use this signature.
vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
	Filters that have multiple connections on one port can use this signature.
vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input)
	Filters that have multiple connections on one port can use this signature.
vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input, int &association)
	Filters that have multiple connections on one port can use this signature.
virtual void	SetErrorCode (unsigned long)
	The error code contains a possible error that occurred while reading or writing the file.
Protected Member Functions inherited from vtkObject
	vtkObject ()
	~vtkObject () override
void	RegisterInternal (vtkObjectBase *, vtkTypeBool check) override
void	UnRegisterInternal (vtkObjectBase *, vtkTypeBool check) override
void	InternalGrabFocus (vtkCommand *mouseEvents, vtkCommand *keypressEvents=nullptr)
	These methods allow a command to exclusively grab all events.
void	InternalReleaseFocus ()
	These methods allow a command to exclusively grab all events.
Protected Member Functions inherited from vtkObjectBase
	vtkObjectBase ()
virtual	~vtkObjectBase ()
virtual void	RegisterInternal (vtkObjectBase *, vtkTypeBool check)
virtual void	UnRegisterInternal (vtkObjectBase *, vtkTypeBool check)
virtual void	ReportReferences (vtkGarbageCollector *)
virtual void	ObjectFinalize ()
	vtkObjectBase (const vtkObjectBase &)
void	operator= (const vtkObjectBase &)

Static Protected Member Functions
static void	SelectionModifiedCallback (vtkObject *caller, unsigned long eid, void *clientdata, void *calldata)
	Callback registered with the VariableArraySelection.
Static Protected Member Functions inherited from vtkDataObjectAlgorithm
static bool	SetOutputDataObject (int dataType, vtkInformation *outputInformation, bool exact=false)
	A helper method that can be used by subclasses in RequestDataObject to create an output data object of the given type if not already present.
Static Protected Member Functions inherited from vtkAlgorithm
static vtkInformationIntegerKey *	PORT_REQUIREMENTS_FILLED ()
Static Protected Member Functions inherited from vtkObjectBase
static vtkMallocingFunction	GetCurrentMallocFunction ()
static vtkReallocingFunction	GetCurrentReallocFunction ()
static vtkFreeingFunction	GetCurrentFreeFunction ()
static vtkFreeingFunction	GetAlternateFreeFunction ()

Protected Attributes
char *	FileName
vtkTimeStamp	FileNameMTime
vtkTimeStamp	MetaDataMTime
vtkSmartPointer< vtkIntArray >	LoadingDimensions
	The dimension ids of the arrays being loaded into the data.
vtkSmartPointer< vtkDataArraySelection >	VariableArraySelection
vtkSmartPointer< vtkStringArray >	AllVariableArrayNames
vtkStringArray *	VariableDimensions
	Placeholder for structure returned from GetVariableDimensions().
std::string	CurrentDimensions
vtkStringArray *	AllDimensions
	Placeholder for structure returned from GetAllDimensions().
vtkTypeBool	ReplaceFillValueWithNan
int	WholeExtent [6]
vtkNetCDFAccessor *	Accessor
Protected Attributes inherited from vtkAlgorithm
vtkTimeStamp	LastAbortCheckTime
vtkInformation *	Information
double	Progress
char *	ProgressText
vtkProgressObserver *	ProgressObserver
unsigned long	ErrorCode
	The error code contains a possible error that occurred while reading or writing the file.
Protected Attributes inherited from vtkObject
bool	Debug
vtkTimeStamp	MTime
vtkSubjectHelper *	SubjectHelper
std::string	ObjectName
Protected Attributes inherited from vtkObjectBase
std::atomic< int32_t >	ReferenceCount
vtkWeakPointerBase **	WeakPointers

Additional Inherited Members
Public Attributes inherited from vtkAlgorithm
std::atomic< vtkTypeBool >	AbortExecute
Static Protected Attributes inherited from vtkAlgorithm
static vtkTimeStamp	LastAbortTime
static vtkExecutive *	DefaultExecutivePrototype

Detailed Description

A superclass for reading netCDF files.

Subclass add conventions to the reader. This class just outputs data into a multi block data set with a vtkImageData at each block. A block is created for each variable except that variables with matching dimensions will be placed in the same block.

Definition at line 35 of file vtkNetCDFReader.h.

Member Typedef Documentation

Superclass

typedef vtkDataObjectAlgorithm vtkNetCDFReader::Superclass

Definition at line 38 of file vtkNetCDFReader.h.

Constructor & Destructor Documentation

vtkNetCDFReader()

vtkNetCDFReader::vtkNetCDFReader ( )

protected

~vtkNetCDFReader()

vtkNetCDFReader::~vtkNetCDFReader ( )

overrideprotected

Member Function Documentation

IsTypeOf()

static vtkTypeBool vtkNetCDFReader::IsTypeOf ( const char *  type )

static

IsA()

virtual vtkTypeBool vtkNetCDFReader::IsA ( const char *  name )

virtual

Return 1 if this class is the same type of (or a subclass of) the named class.

Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkDataObjectAlgorithm.

Reimplemented in vtkNetCDFCFReader.

SafeDownCast()

static vtkNetCDFReader * vtkNetCDFReader::SafeDownCast ( vtkObjectBase *  o )

static

NewInstanceInternal()

virtual vtkObjectBase * vtkNetCDFReader::NewInstanceInternal ( ) const

protectedvirtual

Reimplemented from vtkDataObjectAlgorithm.

Reimplemented in vtkNetCDFCFReader.

NewInstance()

vtkNetCDFReader * vtkNetCDFReader::NewInstance

(

)

const

New()

static vtkNetCDFReader * vtkNetCDFReader::New ( )

static

PrintSelf()

void vtkNetCDFReader::PrintSelf ( ostream &  os, vtkIndent  indent  )

overridevirtual

Methods invoked by print to print information about the object including superclasses.

Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkDataObjectAlgorithm.

SetFileName()

virtual void vtkNetCDFReader::SetFileName ( VTK_FILEPATH const char *  filename )

virtual

vtkGetFilePathMacro()

vtkNetCDFReader::vtkGetFilePathMacro

(

FileName

)

SetAccessor()

virtual void vtkNetCDFReader::SetAccessor ( vtkNetCDFAccessor *  )

virtual

GetAccessor()

virtual vtkNetCDFAccessor * vtkNetCDFReader::GetAccessor ( )

virtual

UpdateMetaData()

int vtkNetCDFReader::UpdateMetaData

(

)

Update the meta data from the current file.

Automatically called during the RequestInformation pipeline update stage.

GetNumberOfVariableArrays()

virtual int vtkNetCDFReader::GetNumberOfVariableArrays ( )

virtual

Variable array selection.

GetVariableArrayName()

virtual const char * vtkNetCDFReader::GetVariableArrayName ( int  index )

virtual

Variable array selection.

GetVariableArrayStatus()

virtual int vtkNetCDFReader::GetVariableArrayStatus ( const char *  name )

virtual

Variable array selection.

SetVariableArrayStatus()

virtual void vtkNetCDFReader::SetVariableArrayStatus ( const char *  name, int  status  )

virtual

Variable array selection.

GetAllVariableArrayNames()

virtual vtkStringArray * vtkNetCDFReader::GetAllVariableArrayNames ( )

virtual

Convenience method to get a list of variable arrays.

The length of the returned list is the same as GetNumberOfVariableArrays, and the string at each index i is the same as returned from GetVariableArrayname(i).

GetVariableDimensions()

virtual vtkStringArray * vtkNetCDFReader::GetVariableDimensions ( )

virtual

Returns an array with string encodings for the dimensions used in each of the variables.

The indices in the returned array correspond to those used in the GetVariableArrayName method. Two arrays with the same dimensions will have the same encoded string returned by this method.

SetDimensions()

virtual void vtkNetCDFReader::SetDimensions ( const char *  dimensions )

virtual

Loads the grid with the given dimensions.

The dimensions are encoded in a string that conforms to the same format as returned by GetVariableDimensions and GetAllDimensions. This method is really a convenience method for SetVariableArrayStatus. It turns on all variables that have the given dimensions and turns off all other variables.

ComputeArraySelection()

bool vtkNetCDFReader::ComputeArraySelection

(

)

Enables arrays in VariableArraySelection depending on Dimensions.

Returns true if one variable matching Dimensions was found.

GetAllDimensions()

virtual vtkStringArray * vtkNetCDFReader::GetAllDimensions ( )

virtual

Returns an array with string encodings for the dimension combinations used in the variables.

The result is the same as GetVariableDimensions except that each entry in the array is unique (a set of dimensions is only given once even if it occurs for multiple variables) and the order is meaningless.

GetReplaceFillValueWithNan()

virtual vtkTypeBool vtkNetCDFReader::GetReplaceFillValueWithNan ( )

virtual

If on, any float or double variable read that has a _FillValue attribute will have that fill value replaced with a not-a-number (NaN) value.

The advantage of setting these to NaN values is that, if implemented properly by the system and careful math operations are used, they can implicitly be ignored by calculations like finding the range of the values. That said, this option should be used with caution as VTK does not fully support NaN values and therefore odd calculations may occur. By default this is off.

SetReplaceFillValueWithNan()

virtual void vtkNetCDFReader::SetReplaceFillValueWithNan ( vtkTypeBool  )

virtual

If on, any float or double variable read that has a _FillValue attribute will have that fill value replaced with a not-a-number (NaN) value.

The advantage of setting these to NaN values is that, if implemented properly by the system and careful math operations are used, they can implicitly be ignored by calculations like finding the range of the values. That said, this option should be used with caution as VTK does not fully support NaN values and therefore odd calculations may occur. By default this is off.

ReplaceFillValueWithNanOn()

virtual void vtkNetCDFReader::ReplaceFillValueWithNanOn ( )

virtual

If on, any float or double variable read that has a _FillValue attribute will have that fill value replaced with a not-a-number (NaN) value.

The advantage of setting these to NaN values is that, if implemented properly by the system and careful math operations are used, they can implicitly be ignored by calculations like finding the range of the values. That said, this option should be used with caution as VTK does not fully support NaN values and therefore odd calculations may occur. By default this is off.

ReplaceFillValueWithNanOff()

virtual void vtkNetCDFReader::ReplaceFillValueWithNanOff ( )

virtual

If on, any float or double variable read that has a _FillValue attribute will have that fill value replaced with a not-a-number (NaN) value.

The advantage of setting these to NaN values is that, if implemented properly by the system and careful math operations are used, they can implicitly be ignored by calculations like finding the range of the values. That said, this option should be used with caution as VTK does not fully support NaN values and therefore odd calculations may occur. By default this is off.

GetTimeUnits()

virtual char * vtkNetCDFReader::GetTimeUnits ( )

virtual

Access to the time dimensions units.

Can be used by the udunits library to convert raw numerical time values into meaningful representations.

GetCalendar()

virtual char * vtkNetCDFReader::GetCalendar ( )

virtual

Access to the time dimensions units.

Can be used by the udunits library to convert raw numerical time values into meaningful representations.

QueryArrayUnits()

std::string vtkNetCDFReader::QueryArrayUnits

(

const char *

ArrayName

)

Get units attached to a particular array in the netcdf file.

RequestDataObject()

int vtkNetCDFReader::RequestDataObject ( vtkInformation *  , vtkInformationVector **  , vtkInformationVector *    )

overrideprotectedvirtual

This is called by the superclass.

This is the method you should override.

Reimplemented from vtkDataObjectAlgorithm.

RequestInformation()

int vtkNetCDFReader::RequestInformation ( vtkInformation *  request, vtkInformationVector **  inputVector, vtkInformationVector *  outputVector  )

overrideprotectedvirtual

Reimplemented from vtkDataObjectAlgorithm.

RequestData()

int vtkNetCDFReader::RequestData ( vtkInformation *  request, vtkInformationVector **  inputVector, vtkInformationVector *  outputVector  )

overrideprotectedvirtual

Reimplemented from vtkDataObjectAlgorithm.

SelectionModifiedCallback()

static void vtkNetCDFReader::SelectionModifiedCallback ( vtkObject *  caller, unsigned long  eid, void *  clientdata, void *  calldata  )

staticprotected

Callback registered with the VariableArraySelection.

DescribeDimensions()

vtkStdString vtkNetCDFReader::DescribeDimensions ( int  ncFD, const int *  dimIds, int  numDims  )

protected

Convenience function for getting a string that describes a set of dimensions.

ReadMetaData()

virtual int vtkNetCDFReader::ReadMetaData ( int  ncFD )

protectedvirtual

Reads meta data and populates ivars.

Returns 1 on success, 0 on failure.

Reimplemented in vtkNetCDFCFReader.

FillVariableDimensions()

virtual int vtkNetCDFReader::FillVariableDimensions ( int  ncFD )

protectedvirtual

Fills the VariableDimensions array.

IsTimeDimension()

virtual int vtkNetCDFReader::IsTimeDimension ( int  ncFD, int  dimId  )

protectedvirtual

Determines whether the given variable is a time dimension.

The default implementation bases the decision on the name of the variable. Subclasses should override this function if there is a more specific way to identify the time variable. This method is always called after ReadMetaData for a given file.

Reimplemented in vtkNetCDFCFReader.

GetTimeValues()

virtual vtkSmartPointer< vtkDoubleArray > vtkNetCDFReader::GetTimeValues ( int  ncFD, int  dimId  )

protectedvirtual

Given a dimension already determined to be a time dimension (via a call to IsTimeDimension) returns an array with time values.

The default implementation just uses the time index for the time value. Subclasses should override this function if there is a convention that identifies time values. This method returns 0 on error, 1 otherwise.

Reimplemented in vtkNetCDFCFReader.

DimensionsAreForPointData()

virtual bool vtkNetCDFReader::DimensionsAreForPointData ( vtkIntArray *  vtkNotUseddimensions )

inlineprotectedvirtual

Called internally to determine whether a variable with the given set of dimensions should be loaded as point data (return true) or cell data (return false).

The implementation in this class always returns true. Subclasses should override to load cell data for some or all variables.

Definition at line 231 of file vtkNetCDFReader.h.

GetUpdateExtentForOutput()

virtual void vtkNetCDFReader::GetUpdateExtentForOutput ( vtkDataSet *  output, int  extent[6]  )

protectedvirtual

Retrieves the update extent for the output object.

The default implementation just gets the update extent from the object as you would expect. However, if a subclass is loading an unstructured data set, this gives it a chance to set the range of values to read.

Reimplemented in vtkNetCDFCFReader.

LoadVariable()

virtual int vtkNetCDFReader::LoadVariable ( int  ncFD, const char *  varName, double  time, vtkDataSet *  output  )

protectedvirtual

Load the variable at the given time into the given data set.

Return 1 on success and 0 on failure.

Member Data Documentation

FileName

char* vtkNetCDFReader::FileName

protected

Definition at line 147 of file vtkNetCDFReader.h.

FileNameMTime

vtkTimeStamp vtkNetCDFReader::FileNameMTime

protected

Definition at line 148 of file vtkNetCDFReader.h.

MetaDataMTime

vtkTimeStamp vtkNetCDFReader::MetaDataMTime

protected

Definition at line 149 of file vtkNetCDFReader.h.

LoadingDimensions

vtkSmartPointer<vtkIntArray> vtkNetCDFReader::LoadingDimensions

protected

The dimension ids of the arrays being loaded into the data.

Definition at line 154 of file vtkNetCDFReader.h.

VariableArraySelection

vtkSmartPointer<vtkDataArraySelection> vtkNetCDFReader::VariableArraySelection

protected

Definition at line 156 of file vtkNetCDFReader.h.

AllVariableArrayNames

vtkSmartPointer<vtkStringArray> vtkNetCDFReader::AllVariableArrayNames

protected

Definition at line 158 of file vtkNetCDFReader.h.

VariableDimensions

vtkStringArray* vtkNetCDFReader::VariableDimensions

protected

Placeholder for structure returned from GetVariableDimensions().

Definition at line 163 of file vtkNetCDFReader.h.

CurrentDimensions

std::string vtkNetCDFReader::CurrentDimensions

protected

Definition at line 165 of file vtkNetCDFReader.h.

AllDimensions

vtkStringArray* vtkNetCDFReader::AllDimensions

protected

Placeholder for structure returned from GetAllDimensions().

Definition at line 170 of file vtkNetCDFReader.h.

ReplaceFillValueWithNan

vtkTypeBool vtkNetCDFReader::ReplaceFillValueWithNan

protected

Definition at line 172 of file vtkNetCDFReader.h.

WholeExtent

int vtkNetCDFReader::WholeExtent[6]

protected

Definition at line 174 of file vtkNetCDFReader.h.

Accessor

vtkNetCDFAccessor* vtkNetCDFReader::Accessor

protected

Definition at line 247 of file vtkNetCDFReader.h.

---

The documentation for this class was generated from the following file:

• IO/NetCDF/vtkNetCDFReader.h