VTK
9.4.20241221
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generate smoothed constours from segmented 2D image data (i.e., "label maps") More...
#include <vtkSurfaceNets2D.h>
Public Member Functions | |
vtkMTimeType | GetMTime () override |
The modified time is also a function of the label values and the smoothing filter. | |
void | SetValue (int i, double value) |
Set a particular label value at label number i. | |
void | SetLabel (int i, double value) |
Set a particular label value at label number i. | |
double | GetValue (int i) |
Get the ith label value. | |
double | GetLabel (int i) |
Get the ith label value. | |
double * | GetValues () |
Get a pointer to an array of labels. | |
double * | GetLabels () |
Get a pointer to an array of labels. | |
void | GetValues (double *contourValues) |
Fill a supplied list with label values. | |
void | GetLabels (double *contourValues) |
Fill a supplied list with label values. | |
void | SetNumberOfLabels (int number) |
Set the number of labels to place into the list. | |
void | SetNumberOfContours (int number) |
Set the number of labels to place into the list. | |
vtkIdType | GetNumberOfLabels () |
Get the number of labels in the list of label values. | |
vtkIdType | GetNumberOfContours () |
Get the number of labels in the list of label values. | |
void | GenerateLabels (int numLabels, double range[2]) |
Generate numLabels equally spaced labels between the specified range. | |
void | GenerateValues (int numContours, double range[2]) |
Generate numLabels equally spaced labels between the specified range. | |
void | GenerateLabels (int numLabels, double rangeStart, double rangeEnd) |
Generate numLabels equally spaced labels between the specified range. | |
void | GenerateValues (int numContours, double rangeStart, double rangeEnd) |
Generate numLabels equally spaced labels between the specified range. | |
virtual void | SetComputeScalars (bool) |
Enable/disable an option to generate cell scalars in the output. | |
virtual bool | GetComputeScalars () |
Enable/disable an option to generate cell scalars in the output. | |
virtual void | ComputeScalarsOn () |
Enable/disable an option to generate cell scalars in the output. | |
virtual void | ComputeScalarsOff () |
Enable/disable an option to generate cell scalars in the output. | |
virtual void | SetBackgroundLabel (double) |
If computing cell scalars, specify the label to use when referencing a labeled region outside any of the specified regions (i.e., when referencing the background region). | |
virtual double | GetBackgroundLabel () |
If computing cell scalars, specify the label to use when referencing a labeled region outside any of the specified regions (i.e., when referencing the background region). | |
virtual void | SetArrayComponent (int) |
Set/get which component of a input multi-component scalar array to contour with; defaults to component 0. | |
virtual int | GetArrayComponent () |
Set/get which component of a input multi-component scalar array to contour with; defaults to component 0. | |
virtual void | SetSmoothing (bool) |
Indicate whether smoothing should be enabled. | |
virtual bool | GetSmoothing () |
Indicate whether smoothing should be enabled. | |
virtual void | SmoothingOn () |
Indicate whether smoothing should be enabled. | |
virtual void | SmoothingOff () |
Indicate whether smoothing should be enabled. | |
vtkGetSmartPointerMacro (Smoother, vtkConstrainedSmoothingFilter) | |
Get the instance of vtkConstrainedSmoothingFilter used to smooth the extracted surface net. | |
virtual void | SetDataCaching (bool) |
Enable caching of intermediate data. | |
virtual bool | GetDataCaching () |
Enable caching of intermediate data. | |
virtual void | DataCachingOn () |
Enable caching of intermediate data. | |
virtual void | DataCachingOff () |
Enable caching of intermediate data. | |
Public Member Functions inherited from vtkPolyDataAlgorithm | |
virtual vtkTypeBool | IsA (const char *type) |
Return 1 if this class is the same type of (or a subclass of) the named class. | |
vtkPolyDataAlgorithm * | NewInstance () const |
void | PrintSelf (ostream &os, vtkIndent indent) override |
Methods invoked by print to print information about the object including superclasses. | |
vtkTypeBool | ProcessRequest (vtkInformation *, vtkInformationVector **, vtkInformationVector *) override |
see vtkAlgorithm for details | |
vtkDataObject * | GetInput () |
vtkDataObject * | GetInput (int port) |
vtkPolyData * | GetPolyDataInput (int port) |
vtkPolyData * | GetOutput () |
Get the output data object for a port on this algorithm. | |
vtkPolyData * | GetOutput (int) |
Get the output data object for a port on this algorithm. | |
virtual void | SetOutput (vtkDataObject *d) |
Get the output data object for a port on this algorithm. | |
void | SetInputData (vtkDataObject *) |
Assign a data object as input. | |
void | SetInputData (int, vtkDataObject *) |
Assign a data object as input. | |
void | AddInputData (vtkDataObject *) |
Assign a data object as input. | |
void | AddInputData (int, vtkDataObject *) |
Assign a data object as input. | |
Public Member Functions inherited from vtkAlgorithm | |
virtual vtkTypeBool | IsA (const char *type) |
Return 1 if this class is the same type of (or a subclass of) the named class. | |
vtkAlgorithm * | NewInstance () const |
void | PrintSelf (ostream &os, vtkIndent indent) override |
Methods invoked by print to print information about the object including superclasses. | |
vtkTypeBool | HasExecutive () |
Check whether this algorithm has an assigned executive. | |
vtkExecutive * | GetExecutive () |
Get this algorithm's executive. | |
virtual void | SetExecutive (vtkExecutive *executive) |
Set this algorithm's executive. | |
virtual vtkTypeBool | ProcessRequest (vtkInformation *request, vtkInformationVector **inInfo, vtkInformationVector *outInfo) |
Upstream/Downstream requests form the generalized interface through which executives invoke a algorithm's functionality. | |
vtkTypeBool | ProcessRequest (vtkInformation *request, vtkCollection *inInfo, vtkInformationVector *outInfo) |
Version of ProcessRequest() that is wrapped. | |
virtual int | ComputePipelineMTime (vtkInformation *request, vtkInformationVector **inInfoVec, vtkInformationVector *outInfoVec, int requestFromOutputPort, vtkMTimeType *mtime) |
A special version of ProcessRequest meant specifically for the pipeline modified time request. | |
virtual int | ModifyRequest (vtkInformation *request, int when) |
This method gives the algorithm a chance to modify the contents of a request before or after (specified in the when argument) it is forwarded. | |
vtkInformation * | GetInputPortInformation (int port) |
Get the information object associated with an input port. | |
vtkInformation * | GetOutputPortInformation (int port) |
Get the information object associated with an output port. | |
int | GetNumberOfInputPorts () |
Get the number of input ports used by the algorithm. | |
int | GetNumberOfOutputPorts () |
Get the number of output ports provided by the algorithm. | |
void | SetAbortExecuteAndUpdateTime () |
Set AbortExecute Flag and update LastAbortTime. | |
void | UpdateProgress (double amount) |
Update the progress of the process object. | |
bool | CheckAbort () |
Checks to see if this filter should abort. | |
vtkInformation * | GetInputArrayInformation (int idx) |
Get the info object for the specified input array to this algorithm. | |
void | RemoveAllInputs () |
Remove all the input data. | |
vtkDataObject * | GetOutputDataObject (int port) |
Get the data object that will contain the algorithm output for the given port. | |
vtkDataObject * | GetInputDataObject (int port, int connection) |
Get the data object that will contain the algorithm input for the given port and given connection. | |
virtual void | RemoveInputConnection (int port, vtkAlgorithmOutput *input) |
Remove a connection from the given input port index. | |
virtual void | RemoveInputConnection (int port, int idx) |
Remove a connection given by index idx. | |
virtual void | RemoveAllInputConnections (int port) |
Removes all input connections. | |
virtual void | SetInputDataObject (int port, vtkDataObject *data) |
Sets the data-object as an input on the given port index. | |
virtual void | SetInputDataObject (vtkDataObject *data) |
virtual void | AddInputDataObject (int port, vtkDataObject *data) |
Add the data-object as an input to this given port. | |
virtual void | AddInputDataObject (vtkDataObject *data) |
vtkAlgorithmOutput * | GetOutputPort (int index) |
Get a proxy object corresponding to the given output port of this algorithm. | |
vtkAlgorithmOutput * | GetOutputPort () |
int | GetNumberOfInputConnections (int port) |
Get the number of inputs currently connected to a port. | |
int | GetTotalNumberOfInputConnections () |
Get the total number of inputs for this algorithm. | |
vtkAlgorithmOutput * | GetInputConnection (int port, int index) |
Get the algorithm output port connected to an input port. | |
vtkAlgorithm * | GetInputAlgorithm (int port, int index, int &algPort) |
Returns the algorithm and the output port index of that algorithm connected to a port-index pair. | |
vtkAlgorithm * | GetInputAlgorithm (int port, int index) |
Returns the algorithm connected to a port-index pair. | |
vtkAlgorithm * | GetInputAlgorithm () |
Equivalent to GetInputAlgorithm(0, 0). | |
vtkExecutive * | GetInputExecutive (int port, int index) |
Returns the executive associated with a particular input connection. | |
vtkExecutive * | GetInputExecutive () |
Equivalent to GetInputExecutive(0, 0) | |
vtkInformation * | GetInputInformation (int port, int index) |
Return the information object that is associated with a particular input connection. | |
vtkInformation * | GetInputInformation () |
Equivalent to GetInputInformation(0, 0) | |
vtkInformation * | GetOutputInformation (int port) |
Return the information object that is associated with a particular output port. | |
virtual vtkTypeBool | Update (int port, vtkInformationVector *requests) |
This method enables the passing of data requests to the algorithm to be used during execution (in addition to bringing a particular port up-to-date). | |
virtual vtkTypeBool | Update (vtkInformation *requests) |
Convenience method to update an algorithm after passing requests to its first output port. | |
virtual int | UpdatePiece (int piece, int numPieces, int ghostLevels, const int extents[6]=nullptr) |
Convenience method to update an algorithm after passing requests to its first output port. | |
virtual VTK_UNBLOCKTHREADS int | UpdateExtent (const int extents[6]) |
Convenience method to update an algorithm after passing requests to its first output port. | |
virtual VTK_UNBLOCKTHREADS int | UpdateTimeStep (double time, int piece=-1, int numPieces=1, int ghostLevels=0, const int extents[6]=nullptr) |
Convenience method to update an algorithm after passing requests to its first output port. | |
virtual VTK_UNBLOCKTHREADS void | UpdateInformation () |
Bring the algorithm's information up-to-date. | |
virtual void | UpdateDataObject () |
Create output object(s). | |
virtual void | PropagateUpdateExtent () |
Propagate meta-data upstream. | |
virtual VTK_UNBLOCKTHREADS void | UpdateWholeExtent () |
Bring this algorithm's outputs up-to-date. | |
void | ConvertTotalInputToPortConnection (int ind, int &port, int &conn) |
Convenience routine to convert from a linear ordering of input connections to a port/connection pair. | |
void | RemoveNoPriorTemporalAccessInformationKey () |
Removes any information key vtkStreamingDemandDrivenPipeline::NO_PRIOR_TEMPORAL_ACCESS() to all output ports of this vtkAlgorithm . | |
virtual vtkInformation * | GetInformation () |
Set/Get the information object associated with this algorithm. | |
virtual void | SetInformation (vtkInformation *) |
Set/Get the information object associated with this algorithm. | |
bool | UsesGarbageCollector () const override |
Participate in garbage collection. | |
virtual void | SetAbortExecute (vtkTypeBool) |
Set/Get the AbortExecute flag for the process object. | |
virtual vtkTypeBool | GetAbortExecute () |
Set/Get the AbortExecute flag for the process object. | |
virtual void | AbortExecuteOn () |
Set/Get the AbortExecute flag for the process object. | |
virtual void | AbortExecuteOff () |
Set/Get the AbortExecute flag for the process object. | |
virtual double | GetProgress () |
Get the execution progress of a process object. | |
void | SetContainerAlgorithm (vtkAlgorithm *containerAlg) |
Set/get a Container algorithm for this algorithm. | |
vtkAlgorithm * | GetContainerAlgorithm () |
Set/get a Container algorithm for this algorithm. | |
virtual void | SetAbortOutput (bool) |
Set/Get an internal variable used to communicate between the algorithm and executive. | |
virtual bool | GetAbortOutput () |
Set/Get an internal variable used to communicate between the algorithm and executive. | |
void | SetProgressShiftScale (double shift, double scale) |
Specify the shift and scale values to use to apply to the progress amount when UpdateProgress is called. | |
virtual double | GetProgressShift () |
Specify the shift and scale values to use to apply to the progress amount when UpdateProgress is called. | |
virtual double | GetProgressScale () |
Specify the shift and scale values to use to apply to the progress amount when UpdateProgress is called. | |
void | SetProgressText (const char *ptext) |
Set the current text message associated with the progress state. | |
virtual char * | GetProgressText () |
Set the current text message associated with the progress state. | |
virtual unsigned long | GetErrorCode () |
The error code contains a possible error that occurred while reading or writing the file. | |
void | SetInputArrayToProcess (const char *name, int fieldAssociation) |
Set the input data arrays that this algorithm will process. | |
virtual void | SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, const char *name) |
Set the input data arrays that this algorithm will process. | |
virtual void | SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, int fieldAttributeType) |
Set the input data arrays that this algorithm will process. | |
virtual void | SetInputArrayToProcess (int idx, vtkInformation *info) |
Set the input data arrays that this algorithm will process. | |
virtual void | SetInputArrayToProcess (int idx, int port, int connection, const char *fieldAssociation, const char *attributeTypeorName) |
Set the input data arrays that this algorithm will process. | |
virtual void | SetInputConnection (int port, vtkAlgorithmOutput *input) |
Set the connection for the given input port index. | |
virtual void | SetInputConnection (vtkAlgorithmOutput *input) |
Set the connection for the given input port index. | |
virtual void | AddInputConnection (int port, vtkAlgorithmOutput *input) |
Add a connection to the given input port index. | |
virtual void | AddInputConnection (vtkAlgorithmOutput *input) |
Add a connection to the given input port index. | |
virtual VTK_UNBLOCKTHREADS void | Update (int port) |
Bring this algorithm's outputs up-to-date. | |
virtual VTK_UNBLOCKTHREADS void | Update () |
Bring this algorithm's outputs up-to-date. | |
virtual void | SetReleaseDataFlag (vtkTypeBool) |
Turn release data flag on or off for all output ports. | |
virtual vtkTypeBool | GetReleaseDataFlag () |
Turn release data flag on or off for all output ports. | |
void | ReleaseDataFlagOn () |
Turn release data flag on or off for all output ports. | |
void | ReleaseDataFlagOff () |
Turn release data flag on or off for all output ports. | |
int | UpdateExtentIsEmpty (vtkInformation *pinfo, vtkDataObject *output) |
This detects when the UpdateExtent will generate no data This condition is satisfied when the UpdateExtent has zero volume (0,-1,...) or the UpdateNumberOfPieces is 0. | |
int | UpdateExtentIsEmpty (vtkInformation *pinfo, int extentType) |
This detects when the UpdateExtent will generate no data This condition is satisfied when the UpdateExtent has zero volume (0,-1,...) or the UpdateNumberOfPieces is 0. | |
int * | GetUpdateExtent () |
These functions return the update extent for output ports that use 3D extents. | |
int * | GetUpdateExtent (int port) |
These functions return the update extent for output ports that use 3D extents. | |
void | GetUpdateExtent (int &x0, int &x1, int &y0, int &y1, int &z0, int &z1) |
These functions return the update extent for output ports that use 3D extents. | |
void | GetUpdateExtent (int port, int &x0, int &x1, int &y0, int &y1, int &z0, int &z1) |
These functions return the update extent for output ports that use 3D extents. | |
void | GetUpdateExtent (int extent[6]) |
These functions return the update extent for output ports that use 3D extents. | |
void | GetUpdateExtent (int port, int extent[6]) |
These functions return the update extent for output ports that use 3D extents. | |
int | GetUpdatePiece () |
These functions return the update extent for output ports that use piece extents. | |
int | GetUpdatePiece (int port) |
These functions return the update extent for output ports that use piece extents. | |
int | GetUpdateNumberOfPieces () |
These functions return the update extent for output ports that use piece extents. | |
int | GetUpdateNumberOfPieces (int port) |
These functions return the update extent for output ports that use piece extents. | |
int | GetUpdateGhostLevel () |
These functions return the update extent for output ports that use piece extents. | |
int | GetUpdateGhostLevel (int port) |
These functions return the update extent for output ports that use piece extents. | |
void | SetProgressObserver (vtkProgressObserver *) |
If an ProgressObserver is set, the algorithm will report progress through it rather than directly. | |
virtual vtkProgressObserver * | GetProgressObserver () |
If an ProgressObserver is set, the algorithm will report progress through it rather than directly. | |
void | SetNoPriorTemporalAccessInformationKey (int key) |
Set to all output ports of this algorithm the information key vtkStreamingDemandDrivenPipeline::NO_PRIOR_TEMPORAL_ACCESS() . | |
void | SetNoPriorTemporalAccessInformationKey () |
Set to all output ports of this algorithm the information key vtkStreamingDemandDrivenPipeline::NO_PRIOR_TEMPORAL_ACCESS() . | |
Public Member Functions inherited from vtkObject | |
vtkBaseTypeMacro (vtkObject, vtkObjectBase) | |
virtual void | DebugOn () |
Turn debugging output on. | |
virtual void | DebugOff () |
Turn debugging output off. | |
bool | GetDebug () |
Get the value of the debug flag. | |
void | SetDebug (bool debugFlag) |
Set the value of the debug flag. | |
virtual void | Modified () |
Update the modification time for this object. | |
virtual vtkMTimeType | GetMTime () |
Return this object's modified time. | |
void | PrintSelf (ostream &os, vtkIndent indent) override |
Methods invoked by print to print information about the object including superclasses. | |
void | RemoveObserver (unsigned long tag) |
void | RemoveObservers (unsigned long event) |
void | RemoveObservers (const char *event) |
void | RemoveAllObservers () |
vtkTypeBool | HasObserver (unsigned long event) |
vtkTypeBool | HasObserver (const char *event) |
vtkTypeBool | InvokeEvent (unsigned long event) |
vtkTypeBool | InvokeEvent (const char *event) |
std::string | GetObjectDescription () const override |
The object description printed in messages and PrintSelf output. | |
unsigned long | AddObserver (unsigned long event, vtkCommand *, float priority=0.0f) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. | |
unsigned long | AddObserver (const char *event, vtkCommand *, float priority=0.0f) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. | |
vtkCommand * | GetCommand (unsigned long tag) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. | |
void | RemoveObserver (vtkCommand *) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. | |
void | RemoveObservers (unsigned long event, vtkCommand *) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. | |
void | RemoveObservers (const char *event, vtkCommand *) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. | |
vtkTypeBool | HasObserver (unsigned long event, vtkCommand *) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. | |
vtkTypeBool | HasObserver (const char *event, vtkCommand *) |
Allow people to add/remove/invoke observers (callbacks) to any VTK object. | |
template<class U , class T > | |
unsigned long | AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f) |
Overloads to AddObserver that allow developers to add class member functions as callbacks for events. | |
template<class U , class T > | |
unsigned long | AddObserver (unsigned long event, U observer, void(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f) |
Overloads to AddObserver that allow developers to add class member functions as callbacks for events. | |
template<class U , class T > | |
unsigned long | AddObserver (unsigned long event, U observer, bool(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f) |
Allow user to set the AbortFlagOn() with the return value of the callback method. | |
vtkTypeBool | InvokeEvent (unsigned long event, void *callData) |
This method invokes an event and return whether the event was aborted or not. | |
vtkTypeBool | InvokeEvent (const char *event, void *callData) |
This method invokes an event and return whether the event was aborted or not. | |
virtual void | SetObjectName (const std::string &objectName) |
Set/get the name of this object for reporting purposes. | |
virtual std::string | GetObjectName () const |
Set/get the name of this object for reporting purposes. | |
Public Member Functions inherited from vtkObjectBase | |
const char * | GetClassName () const |
Return the class name as a string. | |
virtual std::string | GetObjectDescription () const |
The object description printed in messages and PrintSelf output. | |
virtual vtkTypeBool | IsA (const char *name) |
Return 1 if this class is the same type of (or a subclass of) the named class. | |
virtual vtkIdType | GetNumberOfGenerationsFromBase (const char *name) |
Given the name of a base class of this class type, return the distance of inheritance between this class type and the named class (how many generations of inheritance are there between this class and the named class). | |
virtual void | Delete () |
Delete a VTK object. | |
virtual void | FastDelete () |
Delete a reference to this object. | |
void | InitializeObjectBase () |
void | Print (ostream &os) |
Print an object to an ostream. | |
void | Register (vtkObjectBase *o) |
Increase the reference count (mark as used by another object). | |
virtual void | UnRegister (vtkObjectBase *o) |
Decrease the reference count (release by another object). | |
int | GetReferenceCount () |
Return the current reference count of this object. | |
void | SetReferenceCount (int) |
Sets the reference count. | |
bool | GetIsInMemkind () const |
A local state flag that remembers whether this object lives in the normal or extended memory space. | |
virtual void | PrintHeader (ostream &os, vtkIndent indent) |
Methods invoked by print to print information about the object including superclasses. | |
virtual void | PrintTrailer (ostream &os, vtkIndent indent) |
Methods invoked by print to print information about the object including superclasses. | |
Protected Member Functions | |
vtkSurfaceNets2D () | |
~vtkSurfaceNets2D () override=default | |
int | RequestData (vtkInformation *, vtkInformationVector **, vtkInformationVector *) override |
This is called by the superclass. | |
int | FillInputPortInformation (int port, vtkInformation *info) override |
Fill the input port information objects for this algorithm. | |
bool | IsCacheEmpty () |
void | CacheData (vtkPolyData *pd, vtkCellArray *ca) |
Protected Member Functions inherited from vtkPolyDataAlgorithm | |
virtual vtkObjectBase * | NewInstanceInternal () const |
vtkPolyDataAlgorithm () | |
~vtkPolyDataAlgorithm () override | |
virtual int | RequestInformation (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) |
virtual int | RequestData (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) |
This is called by the superclass. | |
virtual int | RequestUpdateExtent (vtkInformation *, vtkInformationVector **, vtkInformationVector *) |
This is called by the superclass. | |
virtual int | RequestUpdateTime (vtkInformation *, vtkInformationVector **, vtkInformationVector *) |
This is called by the superclass. | |
int | FillOutputPortInformation (int port, vtkInformation *info) override |
Fill the output port information objects for this algorithm. | |
int | FillInputPortInformation (int port, vtkInformation *info) override |
Fill the input port information objects for this algorithm. | |
Protected Member Functions inherited from vtkAlgorithm | |
virtual vtkObjectBase * | NewInstanceInternal () const |
vtkAlgorithm () | |
~vtkAlgorithm () override | |
bool | CheckUpstreamAbort () |
Checks to see if an upstream filter has been aborted. | |
virtual int | FillInputPortInformation (int port, vtkInformation *info) |
Fill the input port information objects for this algorithm. | |
virtual int | FillOutputPortInformation (int port, vtkInformation *info) |
Fill the output port information objects for this algorithm. | |
virtual void | SetNumberOfInputPorts (int n) |
Set the number of input ports used by the algorithm. | |
virtual void | SetNumberOfOutputPorts (int n) |
Set the number of output ports provided by the algorithm. | |
int | InputPortIndexInRange (int index, const char *action) |
int | OutputPortIndexInRange (int index, const char *action) |
int | GetInputArrayAssociation (int idx, vtkInformationVector **inputVector) |
Get the association of the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. | |
vtkInformation * | GetInputArrayFieldInformation (int idx, vtkInformationVector **inputVector) |
This method takes in an index (as specified in SetInputArrayToProcess) and a pipeline information vector. | |
virtual vtkExecutive * | CreateDefaultExecutive () |
Create a default executive. | |
void | ReportReferences (vtkGarbageCollector *) override |
virtual void | SetNthInputConnection (int port, int index, vtkAlgorithmOutput *input) |
Replace the Nth connection on the given input port. | |
virtual void | SetNumberOfInputConnections (int port, int n) |
Set the number of input connections on the given input port. | |
void | SetInputDataInternal (int port, vtkDataObject *input) |
These methods are used by subclasses to implement methods to set data objects directly as input. | |
void | AddInputDataInternal (int port, vtkDataObject *input) |
int | GetInputArrayAssociation (int idx, int connection, vtkInformationVector **inputVector) |
Filters that have multiple connections on one port can use this signature. | |
int | GetInputArrayAssociation (int idx, vtkDataObject *input) |
Filters that have multiple connections on one port can use this signature. | |
vtkDataArray * | GetInputArrayToProcess (int idx, vtkInformationVector **inputVector) |
Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. | |
vtkDataArray * | GetInputArrayToProcess (int idx, vtkInformationVector **inputVector, int &association) |
Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. | |
vtkDataArray * | GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector) |
Filters that have multiple connections on one port can use this signature. | |
vtkDataArray * | GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association) |
Filters that have multiple connections on one port can use this signature. | |
vtkDataArray * | GetInputArrayToProcess (int idx, vtkDataObject *input) |
Filters that have multiple connections on one port can use this signature. | |
vtkDataArray * | GetInputArrayToProcess (int idx, vtkDataObject *input, int &association) |
Filters that have multiple connections on one port can use this signature. | |
vtkAbstractArray * | GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector) |
Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. | |
vtkAbstractArray * | GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector, int &association) |
Get the actual data array for the input array specified by idx, this is only reasonable during the REQUEST_DATA pass. | |
vtkAbstractArray * | GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector) |
Filters that have multiple connections on one port can use this signature. | |
vtkAbstractArray * | GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association) |
Filters that have multiple connections on one port can use this signature. | |
vtkAbstractArray * | GetInputAbstractArrayToProcess (int idx, vtkDataObject *input) |
Filters that have multiple connections on one port can use this signature. | |
vtkAbstractArray * | GetInputAbstractArrayToProcess (int idx, vtkDataObject *input, int &association) |
Filters that have multiple connections on one port can use this signature. | |
virtual void | SetErrorCode (unsigned long) |
The error code contains a possible error that occurred while reading or writing the file. | |
Protected Member Functions inherited from vtkObject | |
vtkObject () | |
~vtkObject () override | |
void | RegisterInternal (vtkObjectBase *, vtkTypeBool check) override |
void | UnRegisterInternal (vtkObjectBase *, vtkTypeBool check) override |
void | InternalGrabFocus (vtkCommand *mouseEvents, vtkCommand *keypressEvents=nullptr) |
These methods allow a command to exclusively grab all events. | |
void | InternalReleaseFocus () |
These methods allow a command to exclusively grab all events. | |
Protected Member Functions inherited from vtkObjectBase | |
vtkObjectBase () | |
virtual | ~vtkObjectBase () |
virtual void | RegisterInternal (vtkObjectBase *, vtkTypeBool check) |
virtual void | UnRegisterInternal (vtkObjectBase *, vtkTypeBool check) |
virtual void | ReportReferences (vtkGarbageCollector *) |
virtual void | ObjectFinalize () |
vtkObjectBase (const vtkObjectBase &) | |
void | operator= (const vtkObjectBase &) |
Protected Attributes | |
vtkSmartPointer< vtkContourValues > | Labels |
bool | ComputeScalars |
double | BackgroundLabel |
int | ArrayComponent |
bool | Smoothing |
vtkSmartPointer< vtkConstrainedSmoothingFilter > | Smoother |
bool | DataCaching |
vtkSmartPointer< vtkPolyData > | GeometryCache |
vtkSmartPointer< vtkCellArray > | StencilsCache |
vtkTimeStamp | SmoothingTime |
Protected Attributes inherited from vtkAlgorithm | |
vtkTimeStamp | LastAbortCheckTime |
vtkInformation * | Information |
double | Progress |
char * | ProgressText |
vtkProgressObserver * | ProgressObserver |
unsigned long | ErrorCode |
The error code contains a possible error that occurred while reading or writing the file. | |
Protected Attributes inherited from vtkObject | |
bool | Debug |
vtkTimeStamp | MTime |
vtkSubjectHelper * | SubjectHelper |
std::string | ObjectName |
Protected Attributes inherited from vtkObjectBase | |
std::atomic< int32_t > | ReferenceCount |
vtkWeakPointerBase ** | WeakPointers |
typedef vtkPolyDataAlgorithm | Superclass |
Standard methods for instantiation, printing, and type information. | |
static vtkSurfaceNets2D * | New () |
Standard methods for instantiation, printing, and type information. | |
static vtkTypeBool | IsTypeOf (const char *type) |
Standard methods for instantiation, printing, and type information. | |
static vtkSurfaceNets2D * | SafeDownCast (vtkObjectBase *o) |
Standard methods for instantiation, printing, and type information. | |
virtual vtkTypeBool | IsA (const char *type) |
Standard methods for instantiation, printing, and type information. | |
vtkSurfaceNets2D * | NewInstance () const |
Standard methods for instantiation, printing, and type information. | |
void | PrintSelf (ostream &os, vtkIndent indent) override |
Standard methods for instantiation, printing, and type information. | |
virtual vtkObjectBase * | NewInstanceInternal () const |
Standard methods for instantiation, printing, and type information. | |
Additional Inherited Members | |
Public Types inherited from vtkPolyDataAlgorithm | |
typedef vtkAlgorithm | Superclass |
Public Types inherited from vtkAlgorithm | |
enum | DesiredOutputPrecision { SINGLE_PRECISION , DOUBLE_PRECISION , DEFAULT_PRECISION } |
Values used for setting the desired output precision for various algorithms. More... | |
typedef vtkObject | Superclass |
Static Public Member Functions inherited from vtkPolyDataAlgorithm | |
static vtkPolyDataAlgorithm * | New () |
static vtkTypeBool | IsTypeOf (const char *type) |
static vtkPolyDataAlgorithm * | SafeDownCast (vtkObjectBase *o) |
Static Public Member Functions inherited from vtkAlgorithm | |
static vtkAlgorithm * | New () |
static vtkTypeBool | IsTypeOf (const char *type) |
static vtkAlgorithm * | SafeDownCast (vtkObjectBase *o) |
static vtkInformationIntegerKey * | INPUT_IS_OPTIONAL () |
Keys used to specify input port requirements. | |
static vtkInformationIntegerKey * | INPUT_IS_REPEATABLE () |
static vtkInformationInformationVectorKey * | INPUT_REQUIRED_FIELDS () |
static vtkInformationStringVectorKey * | INPUT_REQUIRED_DATA_TYPE () |
static vtkInformationInformationVectorKey * | INPUT_ARRAYS_TO_PROCESS () |
static vtkInformationIntegerKey * | INPUT_PORT () |
static vtkInformationIntegerKey * | INPUT_CONNECTION () |
static vtkInformationIntegerKey * | CAN_PRODUCE_SUB_EXTENT () |
This key tells the executive that a particular output port is capable of producing an arbitrary subextent of the whole extent. | |
static vtkInformationIntegerKey * | CAN_HANDLE_PIECE_REQUEST () |
Key that tells the pipeline that a particular algorithm can or cannot handle piece request. | |
static vtkInformationIntegerKey * | ABORTED () |
static void | SetDefaultExecutivePrototype (vtkExecutive *proto) |
If the DefaultExecutivePrototype is set, a copy of it is created in CreateDefaultExecutive() using NewInstance(). | |
Static Public Member Functions inherited from vtkObject | |
static vtkObject * | New () |
Create an object with Debug turned off, modified time initialized to zero, and reference counting on. | |
static void | BreakOnError () |
This method is called when vtkErrorMacro executes. | |
static void | SetGlobalWarningDisplay (vtkTypeBool val) |
This is a global flag that controls whether any debug, warning or error messages are displayed. | |
static void | GlobalWarningDisplayOn () |
This is a global flag that controls whether any debug, warning or error messages are displayed. | |
static void | GlobalWarningDisplayOff () |
This is a global flag that controls whether any debug, warning or error messages are displayed. | |
static vtkTypeBool | GetGlobalWarningDisplay () |
This is a global flag that controls whether any debug, warning or error messages are displayed. | |
Static Public Member Functions inherited from vtkObjectBase | |
static vtkTypeBool | IsTypeOf (const char *name) |
Return 1 if this class type is the same type of (or a subclass of) the named class. | |
static vtkIdType | GetNumberOfGenerationsFromBaseType (const char *name) |
Given a the name of a base class of this class type, return the distance of inheritance between this class type and the named class (how many generations of inheritance are there between this class and the named class). | |
static vtkObjectBase * | New () |
Create an object with Debug turned off, modified time initialized to zero, and reference counting on. | |
static void | SetMemkindDirectory (const char *directoryname) |
The name of a directory, ideally mounted -o dax, to memory map an extended memory space within. | |
static bool | GetUsingMemkind () |
A global state flag that controls whether vtkObjects are constructed in the usual way (the default) or within the extended memory space. | |
Public Attributes inherited from vtkAlgorithm | |
std::atomic< vtkTypeBool > | AbortExecute |
Static Protected Member Functions inherited from vtkAlgorithm | |
static vtkInformationIntegerKey * | PORT_REQUIREMENTS_FILLED () |
Static Protected Member Functions inherited from vtkObjectBase | |
static vtkMallocingFunction | GetCurrentMallocFunction () |
static vtkReallocingFunction | GetCurrentReallocFunction () |
static vtkFreeingFunction | GetCurrentFreeFunction () |
static vtkFreeingFunction | GetAlternateFreeFunction () |
Static Protected Attributes inherited from vtkAlgorithm | |
static vtkTimeStamp | LastAbortTime |
static vtkExecutive * | DefaultExecutivePrototype |
generate smoothed constours from segmented 2D image data (i.e., "label maps")
vtkSurfaceNets2D creates boundary/isocontour lines from a label map (e.g., a segmented image) using a threaded, 2D version of the multiple regions/labels surface nets algorithm. The input is a 2D image where each pixel is labeled (integer labels are preferred to real values), and the output data is polygonal data separating labeled regions via line segments. (Note that on output each region [corresponding to a different segmented object] will share points/edges on a common boundary, i.e., two objects next to each other will share the boundary that separates them.)
While this filter is similar to a contouring operation, classic contouring methods assume a continuous scalar field. In comparison, label maps are not continuous in scalar function value, meaning that usual data interpolation (e.g., along edges) is not possible. Instead, when the edge endpoint pixels are labeled in differing regions, the edge is split and transected by a line segment that connects the center points of the squares on either side of the edge. Later, using a energy minimization smoothing process, these split edges will be adjusted to produce a smoother result. (Constraints on smoothing displacements may be specified to prevent excessive shrinkage and/or object distortion.)
The smoothing process is controlled by setting a convergence measure, the number of smoothing iterations, the step size, and the allowed (constraint) distance that points may move. These can be adjusted to provide the desired result. This class provides a method to access an internal instance of vtkConstrainedSmoothingFilter, through which these smoothing parameters may be specified, and which actually performs the smoothing operation. (Note: it is possible to skip the smoothing process altogether by disabling smoothing (e.g., invoking SmoothingOff()) or setting the number of smoothing iterations to zero. This can be useful when using a different smoothing filter like vtkWindowedSincPolyDataFilter; or if an unsmoothed, aliased output is desired. The reason the smoothing is built in to this filter is to remain faithful to the published literature describing the surface nets algorithm.)
See the following reference for more details about the implementation: W. Schroeder, S. Tsalikis, M. Halle, S. Frisken. A High-Performance SurfaceNets Discrete Isocontouring Algorithm. arXiv:2401.14906. 2024. (http://arxiv.org/abs/2401.14906).
The SurfaceNets algorithm was first proposed by Sarah Frisken. Two important papers include the description of surface nets for binary objects (i.e., extracting just one segmented object from a volume) and multi-label (multiple object extraction).
S. Frisken (Gibson), “Constrained Elastic SurfaceNets: Generating Smooth Surfaces from Binary Segmented Data”, Proc. MICCAI, 1998, pp. 888-898.
S. Frisken, “SurfaceNets for Multi-Label Segmentations with Preservation of Sharp Boundaries”, J. Computer Graphics Techniques, 2022.
Note that one nice feature of this filter is that algorithm execution occurs only once no matter the number of object labels / contour values. In many contouring-like algorithms, each separate contour value requires an additional algorithm execution with a new contour value. So in this filter large numbers of contour values do not significantly affect overall speed. The user can specify which objects (i.e., labels) are to be output to the filter. (Unspecified labels are treated as background and not output.)
The filter can optionally output a two-component, cell data array indicating the labels/regions on either side of the line segments composing the output vtkPolyData. This can be used for advanced operations like extracting shared/contacting boundaries between two objects. The name of this cell data array is "BoundaryLabels".
Implementation note: For performance reasons, this filter is internally implemented quite differently than described in the literature. The main difference is that concepts from the Flying Edges parallel isocontouring algorithm are used. Namely, parallel, edge-by-edge processing is used to define cell cases, generate smoothing stencils, and produce points and output lines. The smoothing process is also threaded using a double-buffering approach.
Definition at line 132 of file vtkSurfaceNets2D.h.
Standard methods for instantiation, printing, and type information.
Definition at line 140 of file vtkSurfaceNets2D.h.
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Standard methods for instantiation, printing, and type information.
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Standard methods for instantiation, printing, and type information.
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Standard methods for instantiation, printing, and type information.
Reimplemented from vtkPolyDataAlgorithm.
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Standard methods for instantiation, printing, and type information.
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Standard methods for instantiation, printing, and type information.
Reimplemented from vtkPolyDataAlgorithm.
vtkSurfaceNets2D * vtkSurfaceNets2D::NewInstance | ( | ) | const |
Standard methods for instantiation, printing, and type information.
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Standard methods for instantiation, printing, and type information.
Reimplemented from vtkPolyDataAlgorithm.
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The modified time is also a function of the label values and the smoothing filter.
Reimplemented from vtkObject.
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Set a particular label value at label number i.
The index i ranges between 0 <= i <NumberOfLabels. (Note: while labels values are expressed as doubles, the underlying scalar data may be a different type. During execution the label values are cast to the type of the scalar data.) Note the use of "Value" and "Label" when specifying regions to extract. The use of "Value" is continuous with other VTK continuous-scalar field isocontouring algorithms; however the term "Label" is more consistent with label maps.
Definition at line 161 of file vtkSurfaceNets2D.h.
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Set a particular label value at label number i.
The index i ranges between 0 <= i <NumberOfLabels. (Note: while labels values are expressed as doubles, the underlying scalar data may be a different type. During execution the label values are cast to the type of the scalar data.) Note the use of "Value" and "Label" when specifying regions to extract. The use of "Value" is continuous with other VTK continuous-scalar field isocontouring algorithms; however the term "Label" is more consistent with label maps.
Definition at line 162 of file vtkSurfaceNets2D.h.
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Get the ith label value.
Definition at line 169 of file vtkSurfaceNets2D.h.
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Get the ith label value.
Definition at line 170 of file vtkSurfaceNets2D.h.
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Get a pointer to an array of labels.
There will be GetNumberOfLabels() values in the list.
Definition at line 178 of file vtkSurfaceNets2D.h.
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Get a pointer to an array of labels.
There will be GetNumberOfLabels() values in the list.
Definition at line 179 of file vtkSurfaceNets2D.h.
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Fill a supplied list with label values.
There will be GetNumberOfLabels() values in the list. Make sure you allocate enough memory to hold the list.
Definition at line 188 of file vtkSurfaceNets2D.h.
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Fill a supplied list with label values.
There will be GetNumberOfLabels() values in the list. Make sure you allocate enough memory to hold the list.
Definition at line 189 of file vtkSurfaceNets2D.h.
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Set the number of labels to place into the list.
You only really need to use this method to reduce list size. The method SetValue() will automatically increase list size as needed. Note that for consistency with other isocountoring-related algorithms, some methods use "Labels" and "Contours" interchangeably.
Definition at line 200 of file vtkSurfaceNets2D.h.
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Set the number of labels to place into the list.
You only really need to use this method to reduce list size. The method SetValue() will automatically increase list size as needed. Note that for consistency with other isocountoring-related algorithms, some methods use "Labels" and "Contours" interchangeably.
Definition at line 201 of file vtkSurfaceNets2D.h.
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Get the number of labels in the list of label values.
Definition at line 208 of file vtkSurfaceNets2D.h.
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Get the number of labels in the list of label values.
Definition at line 209 of file vtkSurfaceNets2D.h.
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Generate numLabels equally spaced labels between the specified range.
The labels will include the min/max range values.
Definition at line 217 of file vtkSurfaceNets2D.h.
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Generate numLabels equally spaced labels between the specified range.
The labels will include the min/max range values.
Definition at line 221 of file vtkSurfaceNets2D.h.
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Generate numLabels equally spaced labels between the specified range.
The labels will include the min/max range values.
Definition at line 225 of file vtkSurfaceNets2D.h.
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Generate numLabels equally spaced labels between the specified range.
The labels will include the min/max range values.
Definition at line 229 of file vtkSurfaceNets2D.h.
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Enable/disable an option to generate cell scalars in the output.
The cell scalars are a two-tuple that indicates which labels (i.e., segmented regions) are on either side of each (line) cell (l0,l1) with l0<l1. If an object is one-sided (meaning the background is on one side of the line) then l1=(OutsideLabel). The name of the output cell scalars is "BoundaryLabels". By default this flag is on.
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Enable/disable an option to generate cell scalars in the output.
The cell scalars are a two-tuple that indicates which labels (i.e., segmented regions) are on either side of each (line) cell (l0,l1) with l0<l1. If an object is one-sided (meaning the background is on one side of the line) then l1=(OutsideLabel). The name of the output cell scalars is "BoundaryLabels". By default this flag is on.
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Enable/disable an option to generate cell scalars in the output.
The cell scalars are a two-tuple that indicates which labels (i.e., segmented regions) are on either side of each (line) cell (l0,l1) with l0<l1. If an object is one-sided (meaning the background is on one side of the line) then l1=(OutsideLabel). The name of the output cell scalars is "BoundaryLabels". By default this flag is on.
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Enable/disable an option to generate cell scalars in the output.
The cell scalars are a two-tuple that indicates which labels (i.e., segmented regions) are on either side of each (line) cell (l0,l1) with l0<l1. If an object is one-sided (meaning the background is on one side of the line) then l1=(OutsideLabel). The name of the output cell scalars is "BoundaryLabels". By default this flag is on.
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If computing cell scalars, specify the label to use when referencing a labeled region outside any of the specified regions (i.e., when referencing the background region).
By default this value is zero. Be very careful of the value being used here, it should not overlap an extracted label value, and because it is the same type as the input image scalars, make sure the value can be properly represented (i.e., if the input scalars are an unsigned type, then BackgroundLabel should not be negative).
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If computing cell scalars, specify the label to use when referencing a labeled region outside any of the specified regions (i.e., when referencing the background region).
By default this value is zero. Be very careful of the value being used here, it should not overlap an extracted label value, and because it is the same type as the input image scalars, make sure the value can be properly represented (i.e., if the input scalars are an unsigned type, then BackgroundLabel should not be negative).
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Set/get which component of a input multi-component scalar array to contour with; defaults to component 0.
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Set/get which component of a input multi-component scalar array to contour with; defaults to component 0.
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Indicate whether smoothing should be enabled.
By default, after the isoline is extracted, smoothing occurs using the built-in smoother. To disable smoothing, invoke SmoothingOff().
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Indicate whether smoothing should be enabled.
By default, after the isoline is extracted, smoothing occurs using the built-in smoother. To disable smoothing, invoke SmoothingOff().
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Indicate whether smoothing should be enabled.
By default, after the isoline is extracted, smoothing occurs using the built-in smoother. To disable smoothing, invoke SmoothingOff().
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Indicate whether smoothing should be enabled.
By default, after the isoline is extracted, smoothing occurs using the built-in smoother. To disable smoothing, invoke SmoothingOff().
vtkSurfaceNets2D::vtkGetSmartPointerMacro | ( | Smoother | , |
vtkConstrainedSmoothingFilter | |||
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Get the instance of vtkConstrainedSmoothingFilter used to smooth the extracted surface net.
To control smoothing, access this instance and specify its parameters such as number of smoothing iterations and constraint distance. If you wish to disable smoothing, set SmoothingOff().
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Enable caching of intermediate data.
A common workflow using this filter requires extracting object boundaries, and then repeatedly rerunning the smoothing process with different parameters. To improve performance by avoiding repeated extraction of the boundary, the filter can cache intermediate data prior to the smoothing process. In this way, the boundary is only extracted once, and as long as only the internal constrained smoothing filter is modified, then boundary extraction will not be reexecuted. By default this is enabled.
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Enable caching of intermediate data.
A common workflow using this filter requires extracting object boundaries, and then repeatedly rerunning the smoothing process with different parameters. To improve performance by avoiding repeated extraction of the boundary, the filter can cache intermediate data prior to the smoothing process. In this way, the boundary is only extracted once, and as long as only the internal constrained smoothing filter is modified, then boundary extraction will not be reexecuted. By default this is enabled.
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Enable caching of intermediate data.
A common workflow using this filter requires extracting object boundaries, and then repeatedly rerunning the smoothing process with different parameters. To improve performance by avoiding repeated extraction of the boundary, the filter can cache intermediate data prior to the smoothing process. In this way, the boundary is only extracted once, and as long as only the internal constrained smoothing filter is modified, then boundary extraction will not be reexecuted. By default this is enabled.
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Enable caching of intermediate data.
A common workflow using this filter requires extracting object boundaries, and then repeatedly rerunning the smoothing process with different parameters. To improve performance by avoiding repeated extraction of the boundary, the filter can cache intermediate data prior to the smoothing process. In this way, the boundary is only extracted once, and as long as only the internal constrained smoothing filter is modified, then boundary extraction will not be reexecuted. By default this is enabled.
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This is called by the superclass.
This is the method you should override.
Reimplemented from vtkPolyDataAlgorithm.
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Fill the input port information objects for this algorithm.
This is invoked by the first call to GetInputPortInformation for each port so subclasses can specify what they can handle.
Reimplemented from vtkPolyDataAlgorithm.
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Definition at line 318 of file vtkSurfaceNets2D.h.
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Definition at line 319 of file vtkSurfaceNets2D.h.
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Definition at line 320 of file vtkSurfaceNets2D.h.
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Definition at line 321 of file vtkSurfaceNets2D.h.
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Definition at line 323 of file vtkSurfaceNets2D.h.
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Definition at line 324 of file vtkSurfaceNets2D.h.
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Definition at line 329 of file vtkSurfaceNets2D.h.
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Definition at line 330 of file vtkSurfaceNets2D.h.
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Definition at line 331 of file vtkSurfaceNets2D.h.
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Definition at line 332 of file vtkSurfaceNets2D.h.